Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99892 * 2 1 4 4 H 1.48498 * 109.47173 * 240.00400 * 3 2 1 5 5 H 1.48501 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46790 * 120.00148 * 3 2 1 7 7 C 1.38651 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00249 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.35742 * 117.00405 * 185.05551 * 9 7 2 11 11 C 1.38877 * 120.06882 * 354.47021 * 10 9 7 12 12 C 1.38099 * 119.93290 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.07020 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93470 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47010 * 89.99539 * 14 13 12 16 16 C 1.34778 * 119.99918 * 179.97438 * 15 14 13 17 17 O 1.21699 * 120.00112 * 0.02562 * 16 15 14 18 18 C 1.46432 * 120.00030 * 180.27504 * 16 15 14 19 19 C 1.34798 * 119.99750 * 179.72510 * 18 16 15 20 20 C 1.47225 * 119.99640 * 180.02562 * 19 18 16 21 21 C 1.39846 * 120.55727 * 359.97438 * 20 19 18 22 22 N 1.31622 * 120.64665 * 180.02562 * 21 20 19 23 23 C 1.31929 * 121.96420 * 359.97438 * 22 21 20 24 24 C 1.38851 * 121.06160 * 0.02562 * 23 22 21 25 25 O 1.35920 * 120.38843 * 179.97438 * 24 23 22 26 26 C 1.38816 * 119.22085 * 359.74226 * 24 23 22 27 27 C 1.38303 * 120.13644 * 0.24689 * 13 12 11 28 28 C 1.38097 * 120.07020 * 359.45630 * 27 13 12 29 29 H 0.97000 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03439 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.96845 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.46901 * 329.99568 * 14 13 12 33 33 H 1.08998 * 109.47022 * 209.99648 * 14 13 12 34 34 H 0.96995 * 120.00006 * 0.02562 * 15 14 13 35 35 H 1.07997 * 119.99927 * 359.72679 * 18 16 15 36 36 H 1.07997 * 120.00328 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.67752 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.46741 * 180.02562 * 23 22 21 39 39 H 0.96702 * 113.99222 * 90.00287 * 25 24 23 40 40 H 1.07993 * 120.89126 * 180.25489 * 26 24 23 41 41 H 1.08000 * 119.96571 * 179.70940 * 27 13 12 42 42 H 1.07998 * 120.03710 * 180.27119 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4572 -3.4395 0.0921 12 6 4.2024 -4.5971 0.1996 13 6 3.5688 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6567 -7.3590 1.8493 16 6 5.3753 -8.4449 2.1970 17 8 5.7988 -9.1951 1.3374 18 6 5.6417 -8.7251 3.6093 19 6 6.3557 -9.8143 3.9573 20 6 6.6231 -10.0963 5.3773 21 6 6.1424 -9.2419 6.3746 22 7 6.3809 -9.4920 7.6447 23 6 7.0742 -10.5459 8.0307 24 6 7.5873 -11.4444 7.1047 25 8 8.3002 -12.5255 7.5176 26 6 7.3594 -11.2282 5.7525 27 6 2.1875 -5.8892 0.3280 28 6 1.4366 -4.7346 0.2270 29 1 -0.4851 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0031 31 1 5.2813 -4.5472 0.1889 32 1 5.3273 -6.9555 -0.0966 33 1 3.8311 -7.9145 0.0030 34 1 4.3188 -6.7613 2.5344 35 1 5.2662 -8.0592 4.3721 36 1 6.7315 -10.4800 3.1945 37 1 5.5700 -8.3682 6.1000 38 1 7.2455 -10.7125 9.0840 39 1 7.7619 -13.3114 7.6836 40 1 7.7424 -11.9119 5.0095 41 1 1.6955 -6.8465 0.4175 42 1 0.3580 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181970119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -29.017884 kcal Electronic energy + Delta-G solvation = -26118.591667 eV Core-core repulsion = 22030.013829 eV Total energy + Delta-G solvation = -4088.577838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93396 -39.80082 -39.05853 -37.88178 -36.92556 -34.98921 -34.42478 -32.40895 -31.88887 -30.43481 -30.27812 -29.58589 -26.27569 -25.32453 -24.28184 -24.08704 -22.09150 -21.84986 -20.68429 -20.02316 -18.61145 -18.12686 -17.96738 -17.55470 -17.04398 -16.72811 -16.01647 -15.60852 -15.31051 -14.86069 -14.63495 -14.52121 -14.23850 -14.03924 -13.88000 -13.78567 -13.73380 -13.43501 -13.04090 -12.83973 -12.80213 -12.59841 -12.15774 -11.80741 -11.71920 -11.42381 -11.27801 -10.99155 -10.83525 -10.73680 -10.52333 -10.13304 -9.95502 -9.84504 -9.46108 -9.12026 -8.93103 -8.82033 -8.32071 -7.36296 -6.55127 -4.14263 -0.09611 0.56170 1.50240 2.02854 2.09789 3.03045 3.07201 3.07893 3.11604 3.23502 3.32830 3.50899 3.88628 3.94809 4.20423 4.27210 4.30560 4.47598 4.55770 4.81665 4.88800 4.99344 5.10001 5.14041 5.20985 5.36696 5.37983 5.45855 5.62435 5.76486 5.78088 5.87799 5.93330 6.00085 6.09207 6.31368 6.43093 6.56631 6.77037 6.92079 6.92389 7.10623 7.23643 7.32197 7.37741 7.52323 7.68418 7.89232 8.15523 8.89970 9.57613 10.62150 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.001617 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.417750 B =17310.704473 C =18247.973605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.217 4.217 14 C 0.179 3.821 15 N -0.713 5.713 16 C 0.540 3.460 17 O -0.551 6.551 18 C -0.188 4.188 19 C -0.034 4.034 20 C -0.100 4.100 21 C 0.106 3.894 22 N -0.464 5.464 23 C 0.082 3.918 24 C 0.056 3.944 25 O -0.491 6.491 26 C -0.085 4.085 27 C -0.054 4.054 28 C -0.195 4.195 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.404 0.596 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.394 0.606 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.246 -20.586 12.447 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.218 4.218 14 C 0.057 3.943 15 N -0.363 5.363 16 C 0.328 3.672 17 O -0.431 6.431 18 C -0.209 4.209 19 C -0.054 4.054 20 C -0.103 4.103 21 C -0.051 4.051 22 N -0.173 5.173 23 C -0.075 4.075 24 C 0.009 3.991 25 O -0.300 6.300 26 C -0.110 4.110 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.251 0.749 40 H 0.164 0.836 41 H 0.131 0.869 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.247 -19.930 12.366 26.460 hybrid contribution 0.280 0.276 -0.267 0.475 sum 12.527 -19.654 12.100 26.261 Atomic orbital electron populations 1.70024 1.06011 1.28023 1.45208 1.25317 0.95863 0.98939 0.96286 0.85763 0.78734 0.79589 0.79274 1.19412 1.20188 1.19416 1.21312 0.91854 0.80715 1.53178 0.88947 1.83975 1.34522 1.11572 1.77423 1.19443 0.90325 0.88057 0.91600 1.21159 0.93775 0.98967 1.11745 1.20642 0.98385 0.91623 0.96247 1.19193 0.93566 0.93564 1.15522 1.20006 0.98584 0.94974 0.80781 1.46264 1.53910 1.26356 1.09818 1.18284 0.78715 0.81310 0.88886 1.90810 1.52241 1.48145 1.51896 1.23089 1.02287 0.99572 0.95923 1.22169 0.94006 0.96240 0.92992 1.20003 0.99707 0.95947 0.94605 1.23242 0.96262 0.98318 0.87319 1.67702 1.12738 1.17998 1.18836 1.23316 0.93005 0.90532 1.00673 1.19426 0.95977 0.91621 0.92032 1.84867 1.35597 1.21212 1.88347 1.22195 0.95536 0.97180 0.96135 1.20531 0.92747 0.96836 0.97169 1.20218 0.99691 0.90238 1.11315 0.91796 0.85404 0.87381 0.91436 0.91393 0.76145 0.85043 0.84188 0.81698 0.82014 0.74917 0.83591 0.86946 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 13.67 55.48 0.76 -23.66 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.32 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.73 9.76 0.06 0.00 -4.73 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.81 9.17 -39.40 -0.36 -5.17 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 13 C -0.22 -3.35 5.25 -104.58 -0.55 -3.90 16 14 C 0.18 2.38 5.80 -5.19 -0.03 2.35 16 15 N -0.71 -8.29 5.54 -62.88 -0.35 -8.64 16 16 C 0.54 6.53 7.74 -12.96 -0.10 6.43 16 17 O -0.55 -8.59 16.23 5.19 0.08 -8.50 16 18 C -0.19 -1.63 9.42 -37.50 -0.35 -1.99 16 19 C -0.03 -0.28 9.48 -37.15 -0.35 -0.63 16 20 C -0.10 -0.76 5.88 -104.93 -0.62 -1.38 16 21 C 0.11 0.85 10.59 -17.04 -0.18 0.66 16 22 N -0.46 -4.16 10.34 -12.72 -0.13 -4.29 16 23 C 0.08 0.60 11.13 -17.28 -0.19 0.41 16 24 C 0.06 0.38 6.73 -39.14 -0.26 0.11 16 25 O -0.49 -2.62 13.52 -19.49 -0.26 -2.88 16 26 C -0.08 -0.58 9.90 -38.65 -0.38 -0.96 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C -0.20 -3.85 9.99 -39.39 -0.39 -4.24 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.40 4.05 8.44 -40.82 -0.34 3.70 16 35 H 0.13 0.80 6.10 -52.49 -0.32 0.48 16 36 H 0.14 1.20 7.52 -52.49 -0.39 0.80 16 37 H 0.17 1.00 6.18 -52.49 -0.32 0.67 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.39 0.17 9.06 45.56 0.41 0.59 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -33.77 374.93 -7.51 -41.27 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.63 Total: 7.69 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -4.61 Total: -16.72 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.28 Total: -36.59 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.18 Total: -16.11 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.77 -7.51 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181970119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.256 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds