Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99892 * 2 1 4 4 H 1.48498 * 109.47173 * 240.00400 * 3 2 1 5 5 H 1.48501 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46790 * 120.00148 * 3 2 1 7 7 C 1.38651 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00249 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.35742 * 117.00405 * 185.05551 * 9 7 2 11 11 C 1.38877 * 120.06882 * 354.47021 * 10 9 7 12 12 C 1.38099 * 119.93290 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.07020 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.93470 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47010 * 89.99539 * 14 13 12 16 16 C 1.34778 * 119.99918 * 179.97438 * 15 14 13 17 17 O 1.21699 * 120.00112 * 0.02562 * 16 15 14 18 18 C 1.46432 * 120.00030 * 180.27504 * 16 15 14 19 19 C 1.34798 * 119.99750 * 179.72510 * 18 16 15 20 20 C 1.47225 * 119.99640 * 180.02562 * 19 18 16 21 21 C 1.39846 * 120.55727 * 359.97438 * 20 19 18 22 22 N 1.31622 * 120.64665 * 180.02562 * 21 20 19 23 23 C 1.31929 * 121.96420 * 359.97438 * 22 21 20 24 24 C 1.38851 * 121.06160 * 0.02562 * 23 22 21 25 25 O 1.35920 * 120.38843 * 179.97438 * 24 23 22 26 26 C 1.38816 * 119.22085 * 359.74226 * 24 23 22 27 27 C 1.38303 * 120.13644 * 0.24689 * 13 12 11 28 28 C 1.38097 * 120.07020 * 359.45630 * 27 13 12 29 29 H 0.97000 * 120.00372 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03439 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.96845 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.46901 * 329.99568 * 14 13 12 33 33 H 1.08998 * 109.47022 * 209.99648 * 14 13 12 34 34 H 0.96995 * 120.00006 * 0.02562 * 15 14 13 35 35 H 1.07997 * 119.99927 * 359.72679 * 18 16 15 36 36 H 1.07997 * 120.00328 * 0.02562 * 19 18 16 37 37 H 1.07998 * 119.67752 * 0.02562 * 21 20 19 38 38 H 1.08002 * 119.46741 * 180.02562 * 23 22 21 39 39 H 0.96702 * 113.99222 * 90.00287 * 25 24 23 40 40 H 1.07993 * 120.89126 * 180.25489 * 26 24 23 41 41 H 1.08000 * 119.96571 * 179.70940 * 27 13 12 42 42 H 1.07998 * 120.03710 * 180.27119 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4572 -3.4395 0.0921 12 6 4.2024 -4.5971 0.1996 13 6 3.5688 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6567 -7.3590 1.8493 16 6 5.3753 -8.4449 2.1970 17 8 5.7988 -9.1951 1.3374 18 6 5.6417 -8.7251 3.6093 19 6 6.3557 -9.8143 3.9573 20 6 6.6231 -10.0963 5.3773 21 6 6.1424 -9.2419 6.3746 22 7 6.3809 -9.4920 7.6447 23 6 7.0742 -10.5459 8.0307 24 6 7.5873 -11.4444 7.1047 25 8 8.3002 -12.5255 7.5176 26 6 7.3594 -11.2282 5.7525 27 6 2.1875 -5.8892 0.3280 28 6 1.4366 -4.7346 0.2270 29 1 -0.4851 0.8400 0.0004 30 1 3.9526 -2.4846 -0.0031 31 1 5.2813 -4.5472 0.1889 32 1 5.3273 -6.9555 -0.0966 33 1 3.8311 -7.9145 0.0030 34 1 4.3188 -6.7613 2.5344 35 1 5.2662 -8.0592 4.3721 36 1 6.7315 -10.4800 3.1945 37 1 5.5700 -8.3682 6.1000 38 1 7.2455 -10.7125 9.0840 39 1 7.7619 -13.3114 7.6836 40 1 7.7424 -11.9119 5.0095 41 1 1.6955 -6.8465 0.4175 42 1 0.3580 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181970119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -53.735022 kcal Electronic energy + Delta-G solvation = -26119.663483 eV Core-core repulsion = 22030.013829 eV Total energy + Delta-G solvation = -4089.649653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46957 -40.99108 -40.46893 -38.52947 -38.30078 -35.79599 -35.44406 -34.27389 -32.50998 -31.83946 -31.47999 -30.42193 -27.76984 -26.72980 -25.17004 -24.65134 -23.64303 -22.68393 -22.06304 -20.83500 -19.86722 -19.11171 -18.95949 -18.57758 -18.05921 -17.45524 -16.88216 -16.61002 -16.31708 -16.22051 -15.92817 -15.83084 -15.53393 -15.32022 -14.97198 -14.67129 -14.57275 -14.38510 -14.27786 -14.21431 -13.66718 -13.59107 -13.30778 -13.24004 -13.01085 -12.53728 -12.38417 -12.26969 -12.22175 -12.14345 -11.90938 -11.20221 -11.14581 -10.78595 -10.51116 -10.38779 -10.08833 -9.80709 -9.45390 -9.01002 -8.47804 -6.16224 -0.69260 0.06101 0.54986 0.58213 0.84275 1.36251 1.45855 1.51956 2.17491 2.26620 2.29631 2.71488 2.85199 3.01495 3.18187 3.44766 3.49054 3.59948 3.79127 3.80730 3.86992 4.01846 4.03612 4.16832 4.17989 4.35086 4.46209 4.57253 4.59206 4.75638 4.81152 4.82756 4.97176 5.04673 5.14517 5.21015 5.27084 5.31124 5.44055 5.49485 5.53264 5.69629 5.75304 6.01634 6.16531 6.60232 6.67276 6.86706 6.96882 7.23537 7.76005 8.74623 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.001617 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.417750 B =17310.704473 C =18247.973605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.244 4.244 12 C -0.046 4.046 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.708 5.708 16 C 0.541 3.459 17 O -0.589 6.589 18 C -0.196 4.196 19 C -0.018 4.018 20 C -0.107 4.107 21 C 0.099 3.901 22 N -0.489 5.489 23 C 0.075 3.925 24 C 0.060 3.940 25 O -0.499 6.499 26 C -0.087 4.087 27 C -0.043 4.043 28 C -0.205 4.205 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.416 0.584 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.710 -22.703 13.594 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.184 4.184 14 C 0.061 3.939 15 N -0.359 5.359 16 C 0.332 3.668 17 O -0.472 6.472 18 C -0.217 4.217 19 C -0.039 4.039 20 C -0.109 4.109 21 C -0.059 4.059 22 N -0.199 5.199 23 C -0.082 4.082 24 C 0.013 3.987 25 O -0.311 6.311 26 C -0.113 4.113 27 C -0.062 4.062 28 C -0.224 4.224 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.197 0.803 38 H 0.196 0.804 39 H 0.276 0.724 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.733 -22.111 13.538 29.820 hybrid contribution -0.293 0.431 -0.534 0.746 sum 14.440 -21.680 13.004 29.114 Atomic orbital electron populations 1.70171 1.08007 1.28913 1.48488 1.26567 0.96813 1.02720 0.95765 0.84668 0.77414 0.74359 0.79940 1.18225 1.19759 1.18100 1.21793 0.92577 0.81344 1.53367 0.87899 1.83945 1.36082 1.12684 1.80839 1.20006 0.91651 0.87962 0.93280 1.21249 0.93007 1.00106 1.11986 1.20945 0.99822 0.90726 0.94909 1.19495 0.93464 0.94136 1.11285 1.19901 0.98374 0.93593 0.82066 1.46072 1.53942 1.26641 1.09207 1.18691 0.77759 0.80527 0.89864 1.90798 1.53799 1.49362 1.53246 1.23031 1.03489 1.00674 0.94482 1.22176 0.92852 0.95649 0.93222 1.19952 1.00438 0.96472 0.94068 1.23505 0.96350 0.98856 0.87166 1.67720 1.13774 1.18963 1.19417 1.23642 0.92590 0.90219 1.01744 1.19408 0.95452 0.91947 0.91882 1.84817 1.36253 1.21819 1.88217 1.22432 0.95071 0.97117 0.96692 1.20888 0.93071 0.96986 0.95224 1.20456 1.00097 0.90407 1.11439 0.91813 0.86208 0.84292 0.91055 0.90741 0.74980 0.82408 0.84694 0.80297 0.80417 0.72401 0.82140 0.83419 0.86699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 13.67 21.61 0.30 -54.87 16 2 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 3 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.76 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.35 9.76 -22.69 -0.22 -13.57 16 10 C 0.12 5.74 6.65 22.58 0.15 5.89 16 11 C -0.24 -9.89 9.17 22.39 0.21 -9.68 16 12 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 13 C -0.18 -5.04 5.25 -19.83 -0.10 -5.15 16 14 C 0.18 4.20 5.80 85.63 0.50 4.70 16 15 N -0.71 -13.99 5.54 -471.07 -2.61 -16.60 16 16 C 0.54 11.60 7.74 86.38 0.67 12.27 16 17 O -0.59 -17.11 16.23 -4.34 -0.07 -17.18 16 18 C -0.20 -2.88 9.42 23.62 0.22 -2.65 16 19 C -0.02 -0.26 9.48 23.84 0.23 -0.03 16 20 C -0.11 -1.40 5.88 -20.06 -0.12 -1.52 16 21 C 0.10 1.37 10.59 85.11 0.90 2.27 16 22 N -0.49 -7.98 10.34 -194.14 -2.01 -9.98 16 23 C 0.08 0.96 11.13 84.83 0.94 1.90 16 24 C 0.06 0.68 6.73 22.55 0.15 0.83 16 25 O -0.50 -4.10 13.52 -92.65 -1.25 -5.36 16 26 C -0.09 -1.00 9.90 22.87 0.23 -0.78 16 27 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 28 C -0.20 -8.07 9.99 22.39 0.22 -7.85 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 31 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 32 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.41 6.75 8.44 -92.71 -0.78 5.96 16 35 H 0.16 1.39 6.10 -2.91 -0.02 1.38 16 36 H 0.14 2.06 7.52 -2.91 -0.02 2.04 16 37 H 0.18 1.73 6.18 -2.91 -0.02 1.71 16 38 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.42 -0.70 9.06 -74.06 -0.67 -1.37 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 42 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -77.73 374.93 1.55 -76.19 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.35 Total: 23.17 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.74 Total: -25.52 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -4.32 Total: -81.45 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.54 Total: -36.11 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.73 1.55 -76.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181970119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.452 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds