Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47369 * 240.00630 * 3 2 1 5 5 H 1.48507 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47070 * 120.00064 * 3 2 1 7 7 C 1.38797 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00230 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00231 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47136 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00151 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99973 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00140 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47345 * 179.97438 * 14 13 11 16 16 C 1.53116 * 109.52278 * 175.00237 * 15 14 13 17 17 C 1.53040 * 109.27862 * 177.62739 * 16 15 14 18 18 N 1.46851 * 109.51898 * 300.81641 * 17 16 15 19 19 C 1.46896 * 110.99976 * 185.83872 * 18 17 16 20 20 C 1.53005 * 109.47100 * 76.73622 * 19 18 17 21 21 F 1.39893 * 109.47176 * 53.97886 * 20 19 18 22 22 F 1.39902 * 109.47234 * 173.98277 * 20 19 18 23 23 F 1.39907 * 109.47100 * 293.98361 * 20 19 18 24 24 C 1.46845 * 111.19816 * 61.74181 * 18 17 16 25 25 C 1.53035 * 109.52666 * 298.26049 * 24 18 17 26 26 H 0.97001 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47210 * 59.99931 * 10 9 7 28 28 H 1.08997 * 109.47071 * 300.00126 * 10 9 7 29 29 H 0.97002 * 119.99982 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46953 * 59.99933 * 14 13 11 31 31 H 1.08997 * 109.47250 * 300.00175 * 14 13 11 32 32 H 1.08996 * 109.52059 * 54.87604 * 15 14 13 33 33 H 1.08996 * 109.50598 * 57.67906 * 16 15 14 34 34 H 1.09000 * 109.53532 * 297.57990 * 16 15 14 35 35 H 1.08996 * 109.46060 * 180.80132 * 17 16 15 36 36 H 1.08999 * 109.45501 * 60.82422 * 17 16 15 37 37 H 1.08993 * 109.47537 * 196.73589 * 19 18 17 38 38 H 1.08999 * 109.47293 * 316.74198 * 19 18 17 39 39 H 1.09004 * 109.46137 * 58.27686 * 24 18 17 40 40 H 1.08998 * 109.46434 * 178.23627 * 24 18 17 41 41 H 1.09004 * 109.49721 * 299.23857 * 25 24 18 42 42 H 1.09000 * 109.50459 * 179.12147 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8439 -6.3431 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 6 3.5023 -8.6987 -0.0014 16 6 2.9702 -10.1289 0.1243 17 6 4.1421 -11.1112 0.0631 18 7 4.8553 -10.9453 -1.2099 19 6 5.9015 -11.9650 -1.3639 20 6 5.2603 -13.2991 -1.7513 21 9 4.4596 -13.1200 -2.8843 22 9 6.2625 -14.2342 -2.0315 23 9 4.4726 -13.7629 -0.6922 24 6 5.4158 -9.5936 -1.3323 25 6 4.2820 -8.5660 -1.3125 26 1 -0.4849 0.8401 0.0004 27 1 3.1243 -3.7314 0.8894 28 1 3.1243 -3.7314 -0.8905 29 1 3.8007 -6.1835 -0.0014 30 1 1.7213 -7.8751 -0.8900 31 1 1.7219 -7.8753 0.8899 32 1 4.1618 -8.4802 0.8384 33 1 2.2803 -10.3338 -0.6942 34 1 2.4501 -10.2419 1.0755 35 1 3.7653 -12.1312 0.1381 36 1 4.8244 -10.9143 0.8900 37 1 6.5976 -11.6564 -2.1437 38 1 6.4383 -12.0798 -0.4222 39 1 6.0923 -9.4041 -0.4988 40 1 5.9642 -9.5114 -2.2707 41 1 3.6127 -8.7464 -2.1538 42 1 4.6995 -7.5619 -1.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186993236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -200.293411 kcal Electronic energy + Delta-G solvation = -26821.700104 eV Core-core repulsion = 22319.282413 eV Total energy + Delta-G solvation = -4502.417691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.47295 -48.05787 -47.87471 -39.96648 -38.89504 -35.88661 -33.34303 -32.43097 -31.36905 -30.29454 -28.92333 -26.21684 -25.43848 -23.74387 -23.42254 -22.12590 -20.51037 -20.02009 -18.92055 -18.88517 -17.88169 -17.82929 -16.52126 -16.12866 -15.97796 -15.58686 -15.33018 -14.97087 -14.82677 -14.80766 -14.70276 -14.38657 -14.31278 -14.11715 -14.08643 -14.04160 -13.69342 -13.48012 -13.09585 -12.82998 -12.72721 -12.56177 -12.37541 -12.19324 -11.74094 -11.63524 -11.05760 -11.04582 -11.03176 -10.85753 -10.74815 -10.72986 -9.82584 -9.39458 -9.11129 -9.06646 -8.86860 -8.23984 -6.50181 -6.21708 -3.92409 2.26041 2.96879 3.04163 3.11241 3.22974 3.27262 3.31007 3.38786 3.57211 3.71943 3.97476 4.20250 4.24188 4.33466 4.40181 4.56372 4.61683 4.76857 4.87197 4.90544 5.06798 5.12275 5.13242 5.20071 5.35572 5.37271 5.44865 5.55238 5.63705 5.73061 5.78671 5.87710 5.90216 6.04623 6.13089 6.24688 6.36719 6.62814 7.58792 7.70917 8.34648 8.62505 9.23327 10.85643 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.035838 B = 0.001677 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.101267 B =16691.052512 C =17084.474696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.739 5.739 14 C 0.127 3.873 15 C -0.101 4.101 16 C -0.108 4.108 17 C 0.038 3.962 18 N -0.533 5.533 19 C 0.009 3.991 20 C 0.457 3.543 21 F -0.171 7.171 22 F -0.186 7.186 23 F -0.183 7.183 24 C 0.060 3.940 25 C -0.113 4.113 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 -27.285 -1.539 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.394 5.394 14 C 0.003 3.997 15 C -0.120 4.120 16 C -0.146 4.146 17 C -0.089 4.089 18 N -0.258 5.258 19 C -0.121 4.121 20 C 0.403 3.597 21 F -0.153 7.153 22 F -0.168 7.168 23 F -0.165 7.165 24 C -0.067 4.067 25 C -0.151 4.151 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.230 0.770 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.393 -27.591 -1.921 30.730 hybrid contribution 2.980 1.193 0.587 3.263 sum 16.373 -26.398 -1.334 31.092 Atomic orbital electron populations 1.70009 1.05945 1.27563 1.46737 1.24993 0.95035 0.99022 0.94547 0.86224 0.79235 0.81255 0.78774 1.19943 1.20806 1.19964 1.22826 0.94858 0.91692 1.59086 0.90999 1.85409 1.04941 0.96289 1.96715 1.23529 1.06550 0.95505 1.04833 1.20297 0.86543 0.86287 0.75193 1.90705 1.15398 1.85620 1.47448 1.46013 1.09796 1.05571 1.77980 1.21289 0.95455 0.80435 1.02514 1.21466 0.97055 0.95076 0.98372 1.21545 0.97289 0.92578 1.03198 1.22534 0.96096 1.01725 0.88548 1.61738 1.25369 1.02929 1.35725 1.23191 0.94663 0.89356 1.04921 1.20524 0.76854 0.87224 0.75138 1.93216 1.74745 1.95352 1.51946 1.93191 1.61073 1.68701 1.93794 1.93113 1.75898 1.90364 1.57113 1.22155 0.96559 0.86545 1.01449 1.21682 0.97181 0.98032 0.98214 0.92123 0.89317 0.89276 0.76994 0.91418 0.91578 0.90680 0.90307 0.90601 0.88967 0.94081 0.86344 0.89908 0.94096 0.90053 0.90266 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 12 O -0.52 -11.74 15.86 5.56 0.09 -11.65 16 13 N -0.74 -9.32 5.31 -60.29 -0.32 -9.64 16 14 C 0.13 1.38 5.07 -4.04 -0.02 1.36 16 15 C -0.10 -0.74 2.29 -90.50 -0.21 -0.94 16 16 C -0.11 -0.74 5.38 -26.65 -0.14 -0.89 16 17 C 0.04 0.24 5.23 -3.83 -0.02 0.22 16 18 N -0.53 -3.31 4.40 -234.67 -1.03 -4.34 16 19 C 0.01 0.04 5.12 -3.82 -0.02 0.02 16 20 C 0.46 3.12 3.27 37.16 0.12 3.25 16 21 F -0.17 -1.51 17.13 2.25 0.04 -1.48 16 22 F -0.19 -1.34 17.32 2.25 0.04 -1.30 16 23 F -0.18 -1.41 14.67 2.25 0.03 -1.38 16 24 C 0.06 0.32 5.42 -3.84 -0.02 0.30 16 25 C -0.11 -0.76 5.23 -26.65 -0.14 -0.90 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.40 3.80 7.69 -40.82 -0.31 3.49 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.61 5.47 -51.93 -0.28 0.33 16 36 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.12 0.37 7.77 -51.93 -0.40 -0.03 16 38 H 0.08 0.28 7.98 -51.93 -0.41 -0.14 16 39 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.48 7.27 -51.93 -0.38 0.10 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -34.57 367.01 -8.22 -42.79 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.98 Total: -1.88 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.12 Total: -3.69 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.62 Total: -39.37 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.11 Total: -4.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.57 -8.22 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186993236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.507 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds