Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47369 * 240.00630 * 3 2 1 5 5 H 1.48507 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47070 * 120.00064 * 3 2 1 7 7 C 1.38797 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00230 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00231 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47136 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00151 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99973 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00140 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47345 * 179.97438 * 14 13 11 16 16 C 1.53116 * 109.52278 * 175.00237 * 15 14 13 17 17 C 1.53040 * 109.27862 * 177.62739 * 16 15 14 18 18 N 1.46851 * 109.51898 * 300.81641 * 17 16 15 19 19 C 1.46896 * 110.99976 * 185.83872 * 18 17 16 20 20 C 1.53005 * 109.47100 * 76.73622 * 19 18 17 21 21 F 1.39893 * 109.47176 * 53.97886 * 20 19 18 22 22 F 1.39902 * 109.47234 * 173.98277 * 20 19 18 23 23 F 1.39907 * 109.47100 * 293.98361 * 20 19 18 24 24 C 1.46845 * 111.19816 * 61.74181 * 18 17 16 25 25 C 1.53035 * 109.52666 * 298.26049 * 24 18 17 26 26 H 0.97001 * 119.99604 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47210 * 59.99931 * 10 9 7 28 28 H 1.08997 * 109.47071 * 300.00126 * 10 9 7 29 29 H 0.97002 * 119.99982 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46953 * 59.99933 * 14 13 11 31 31 H 1.08997 * 109.47250 * 300.00175 * 14 13 11 32 32 H 1.08996 * 109.52059 * 54.87604 * 15 14 13 33 33 H 1.08996 * 109.50598 * 57.67906 * 16 15 14 34 34 H 1.09000 * 109.53532 * 297.57990 * 16 15 14 35 35 H 1.08996 * 109.46060 * 180.80132 * 17 16 15 36 36 H 1.08999 * 109.45501 * 60.82422 * 17 16 15 37 37 H 1.08993 * 109.47537 * 196.73589 * 19 18 17 38 38 H 1.08999 * 109.47293 * 316.74198 * 19 18 17 39 39 H 1.09004 * 109.46137 * 58.27686 * 24 18 17 40 40 H 1.08998 * 109.46434 * 178.23627 * 24 18 17 41 41 H 1.09004 * 109.49721 * 299.23857 * 25 24 18 42 42 H 1.09000 * 109.50459 * 179.12147 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8439 -6.3431 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 6 3.5023 -8.6987 -0.0014 16 6 2.9702 -10.1289 0.1243 17 6 4.1421 -11.1112 0.0631 18 7 4.8553 -10.9453 -1.2099 19 6 5.9015 -11.9650 -1.3639 20 6 5.2603 -13.2991 -1.7513 21 9 4.4596 -13.1200 -2.8843 22 9 6.2625 -14.2342 -2.0315 23 9 4.4726 -13.7629 -0.6922 24 6 5.4158 -9.5936 -1.3323 25 6 4.2820 -8.5660 -1.3125 26 1 -0.4849 0.8401 0.0004 27 1 3.1243 -3.7314 0.8894 28 1 3.1243 -3.7314 -0.8905 29 1 3.8007 -6.1835 -0.0014 30 1 1.7213 -7.8751 -0.8900 31 1 1.7219 -7.8753 0.8899 32 1 4.1618 -8.4802 0.8384 33 1 2.2803 -10.3338 -0.6942 34 1 2.4501 -10.2419 1.0755 35 1 3.7653 -12.1312 0.1381 36 1 4.8244 -10.9143 0.8900 37 1 6.5976 -11.6564 -2.1437 38 1 6.4383 -12.0798 -0.4222 39 1 6.0923 -9.4041 -0.4988 40 1 5.9642 -9.5114 -2.2707 41 1 3.6127 -8.7464 -2.1538 42 1 4.6995 -7.5619 -1.3877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186993236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -224.456886 kcal Electronic energy + Delta-G solvation = -26822.747911 eV Core-core repulsion = 22319.282413 eV Total energy + Delta-G solvation = -4503.465498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.02301 -48.60111 -48.46529 -40.85763 -39.93781 -36.75592 -34.57899 -34.32738 -31.85015 -31.39946 -29.89289 -27.71205 -26.92265 -24.27448 -23.98001 -22.74049 -21.75396 -20.72772 -19.81310 -19.46588 -19.41463 -18.35141 -17.80969 -17.27948 -16.86903 -16.81641 -16.49708 -16.06427 -15.81858 -15.57435 -15.40872 -15.30174 -15.11476 -14.90395 -14.76258 -14.68872 -14.62437 -14.53419 -14.19740 -14.02218 -13.77504 -13.23938 -13.15853 -13.15204 -12.89812 -12.85284 -12.67289 -12.59450 -12.13571 -11.76889 -11.66569 -11.41775 -11.30382 -11.11868 -10.89928 -10.26357 -10.08802 -9.50170 -8.65860 -8.33412 -6.11732 1.28226 1.44861 1.48240 1.57848 1.63860 1.79933 2.27624 2.32972 2.53241 2.94345 3.00577 3.12076 3.33704 3.48699 3.64302 3.78709 3.85002 4.01700 4.12997 4.25277 4.30931 4.32846 4.35251 4.45709 4.52358 4.55327 4.58152 4.72862 4.86749 4.90049 4.92658 5.02116 5.15479 5.25902 5.40554 5.42587 5.50642 5.82822 5.94606 6.20633 6.53586 7.07628 7.27661 8.75515 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.035838 B = 0.001677 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.101267 B =16691.052512 C =17084.474696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.709 5.709 14 C 0.127 3.873 15 C -0.087 4.087 16 C -0.107 4.107 17 C 0.042 3.958 18 N -0.550 5.550 19 C 0.015 3.985 20 C 0.453 3.547 21 F -0.187 7.187 22 F -0.189 7.189 23 F -0.191 7.191 24 C 0.063 3.937 25 C -0.113 4.113 26 H 0.271 0.729 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.416 0.584 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.418 -27.395 -1.213 33.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.364 5.364 14 C 0.004 3.996 15 C -0.106 4.106 16 C -0.145 4.145 17 C -0.085 4.085 18 N -0.275 5.275 19 C -0.115 4.115 20 C 0.398 3.602 21 F -0.168 7.168 22 F -0.171 7.171 23 F -0.172 7.172 24 C -0.063 4.063 25 C -0.151 4.151 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.253 0.747 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.935 -27.742 -1.596 32.542 hybrid contribution 1.917 1.056 0.469 2.238 sum 18.852 -26.686 -1.127 32.692 Atomic orbital electron populations 1.70184 1.08004 1.28646 1.47970 1.26148 0.95977 1.03385 0.93772 0.84996 0.77783 0.75638 0.79525 1.18597 1.20519 1.18607 1.23177 0.95370 0.91947 1.58901 0.89786 1.85618 1.10777 0.99355 1.97060 1.23369 1.03453 0.94325 1.06852 1.20087 0.86239 0.86780 0.75144 1.90695 1.17620 1.86166 1.50288 1.45734 1.10196 1.05070 1.75364 1.21408 0.96965 0.79922 1.01353 1.21376 0.95682 0.93986 0.99521 1.21521 0.97602 0.92585 1.02837 1.22463 0.95930 1.00932 0.89197 1.61656 1.26392 1.03705 1.35773 1.23254 0.94194 0.87517 1.06528 1.20953 0.76581 0.88202 0.74478 1.93183 1.75325 1.95453 1.52887 1.93181 1.61036 1.69060 1.93804 1.93099 1.76224 1.90596 1.57328 1.22142 0.95972 0.85470 1.02715 1.21674 0.97388 0.99123 0.96932 0.92030 0.87135 0.87104 0.74671 0.92966 0.92529 0.88977 0.91868 0.90214 0.89617 0.92721 0.84481 0.87918 0.92511 0.88988 0.92075 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.55 -30.95 9.50 67.95 0.65 -30.31 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 11 C 0.53 19.20 7.85 87.66 0.69 19.89 16 12 O -0.57 -26.47 15.86 -3.02 -0.05 -26.52 16 13 N -0.71 -16.61 5.31 -463.06 -2.46 -19.07 16 14 C 0.13 2.65 5.07 86.38 0.44 3.09 16 15 C -0.09 -1.09 2.29 -10.71 -0.02 -1.11 16 16 C -0.11 -1.34 5.38 30.65 0.16 -1.18 16 17 C 0.04 0.43 5.23 86.33 0.45 0.89 16 18 N -0.55 -5.52 4.40 -896.37 -3.94 -9.47 16 19 C 0.01 0.10 5.12 86.31 0.44 0.54 16 20 C 0.45 5.59 3.27 71.98 0.24 5.82 16 21 F -0.19 -3.19 17.13 44.97 0.77 -2.42 16 22 F -0.19 -2.48 17.32 44.97 0.78 -1.70 16 23 F -0.19 -2.76 14.67 44.97 0.66 -2.10 16 24 C 0.06 0.48 5.42 86.33 0.47 0.95 16 25 C -0.11 -1.26 5.23 30.64 0.16 -1.10 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 28 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 29 H 0.42 6.60 7.69 -92.71 -0.71 5.89 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.02 5.47 -2.39 -0.01 1.01 16 36 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.14 0.42 7.77 -2.39 -0.02 0.40 16 38 H 0.10 0.33 7.98 -2.39 -0.02 0.31 16 39 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.09 0.54 7.92 -2.39 -0.02 0.52 16 41 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 42 H 0.08 0.79 7.27 -2.39 -0.02 0.77 16 Total: -1.00 -77.92 367.01 1.82 -76.10 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.33 Total: 11.35 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.57 Total: -5.91 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -6.12 Total: -84.27 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 2.21 Total: -6.23 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.92 1.82 -76.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186993236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.355 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds