Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38244 * 119.88982 * 2 1 4 4 C 1.37985 * 120.22240 * 179.97438 * 3 2 1 5 5 C 1.39617 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.47867 * 120.11040 * 180.02562 * 5 4 3 7 7 N 1.34774 * 119.99878 * 359.97438 * 6 5 4 8 8 O 1.21548 * 119.99688 * 180.02562 * 6 5 4 9 9 C 1.39453 * 119.77796 * 359.69899 * 5 4 3 10 10 C 1.38653 * 119.77960 * 0.55223 * 9 5 4 11 11 N 1.39875 * 120.00400 * 179.74377 * 10 9 5 12 12 C 1.34767 * 120.00365 * 325.31053 * 11 10 9 13 13 O 1.21606 * 119.99895 * 4.41740 * 12 11 10 14 14 C 1.47501 * 120.00399 * 184.42658 * 12 11 10 15 15 C 1.39677 * 120.19870 * 359.97438 * 14 12 11 16 16 C 1.37824 * 119.92186 * 179.97438 * 15 14 12 17 17 C 1.38577 * 120.32198 * 0.02562 * 16 15 14 18 18 C 1.38027 * 120.40402 * 359.97438 * 17 16 15 19 19 C 1.38828 * 120.07569 * 0.02562 * 18 17 16 20 20 O 1.35514 * 120.16074 * 180.02562 * 19 18 17 21 21 C 1.34812 * 117.00243 * 354.60174 * 20 19 18 22 22 H 1.07998 * 119.99765 * 5.04920 * 21 20 19 23 23 C 1.38698 * 119.99868 * 185.05054 * 21 20 19 24 24 N 1.31514 * 120.00309 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99760 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46882 * 60.00274 * 25 23 21 27 27 H 1.48503 * 109.46908 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47085 * 299.99979 * 25 23 21 29 29 H 1.08995 * 109.47062 * 270.02534 * 1 2 3 30 30 H 1.08996 * 109.46576 * 30.02839 * 1 2 3 31 31 H 1.09003 * 109.46908 * 150.02447 * 1 2 3 32 32 H 1.07997 * 119.88946 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00088 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99994 * 0.02562 * 7 6 5 35 35 H 0.96995 * 120.00064 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.11291 * 180.29923 * 9 5 4 37 37 H 0.97000 * 119.99554 * 145.30104 * 11 10 9 38 38 H 1.08007 * 120.04137 * 359.96316 * 15 14 12 39 39 H 1.07999 * 119.84104 * 180.02562 * 16 15 14 40 40 H 1.08002 * 119.79813 * 179.97438 * 17 16 15 41 41 H 1.08004 * 119.95599 * 179.74333 * 18 17 16 42 42 H 0.97002 * 120.00106 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1986 0.0000 4 6 3.5758 1.2066 0.0005 5 6 4.2809 0.0015 0.0005 6 6 5.7596 0.0073 0.0017 7 7 6.4289 1.1771 0.0022 8 8 6.3714 -1.0430 0.0012 9 6 3.5860 -1.2075 0.0064 10 6 2.1995 -1.2049 0.0005 11 7 1.4978 -2.4149 0.0009 12 6 1.9926 -3.4811 -0.6583 13 8 3.0864 -3.4160 -1.1857 14 6 1.2075 -4.7271 -0.7403 15 6 -0.0492 -4.8068 -0.1358 16 6 -0.7782 -5.9736 -0.2165 17 6 -0.2704 -7.0703 -0.8946 18 6 0.9699 -7.0064 -1.4968 19 6 1.7184 -5.8393 -1.4259 20 8 2.9361 -5.7745 -2.0170 21 6 3.4131 -6.9114 -2.5624 22 1 2.7967 -7.7978 -2.5883 23 6 4.6954 -6.9425 -3.0901 24 7 5.4461 -5.8632 -3.0580 25 14 5.3565 -8.5181 -3.8451 26 1 4.4909 -8.9236 -4.9815 27 1 6.7405 -8.2904 -4.3330 28 1 5.3640 -9.5929 -2.8204 29 1 -0.3633 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6524 2.1318 -0.0004 33 1 4.1104 2.1450 0.0009 34 1 5.9406 2.0152 0.0022 35 1 7.3988 1.1809 0.0026 36 1 4.1260 -2.1428 0.0113 37 1 0.6550 -2.4866 0.4758 38 1 -0.4492 -3.9550 0.3943 39 1 -1.7499 -6.0336 0.2510 40 1 -0.8487 -7.9807 -0.9521 41 1 1.3604 -7.8668 -2.0199 42 1 6.3431 -5.8852 -3.4267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195214931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -69.489013 kcal Electronic energy + Delta-G solvation = -28754.187910 eV Core-core repulsion = 24663.855112 eV Total energy + Delta-G solvation = -4090.332798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92672 -41.01842 -40.24543 -39.02055 -38.07643 -35.95639 -34.81222 -34.37163 -33.46661 -32.47506 -30.64485 -30.39070 -28.32193 -27.41690 -25.30039 -24.04182 -23.64895 -22.95652 -21.52278 -21.40740 -19.93453 -19.62756 -19.03397 -18.12167 -17.90171 -17.29514 -16.53516 -16.44017 -16.20794 -16.13253 -16.00021 -15.89881 -15.59111 -15.39522 -15.13450 -15.04458 -14.50920 -14.49630 -14.38225 -14.27914 -13.58444 -13.26044 -13.05890 -12.92264 -12.72945 -12.68712 -12.53612 -12.43164 -12.34510 -12.18638 -11.52533 -11.42363 -11.21463 -10.86213 -10.81709 -10.64608 -9.91632 -9.76894 -9.19472 -9.02502 -8.47415 -6.20042 -0.24336 0.00986 0.39678 0.70073 1.28111 1.42256 1.47506 1.71295 2.00573 2.06474 2.12995 2.48513 2.79919 2.87354 3.18416 3.42071 3.75063 3.80900 3.90465 4.03076 4.03143 4.12752 4.24707 4.36423 4.46051 4.50066 4.61310 4.76552 4.87742 4.90491 4.94114 5.02897 5.08205 5.20218 5.27647 5.31532 5.40293 5.44947 5.49830 5.57871 5.66688 5.80431 5.90841 5.97439 6.13887 6.39680 6.50682 6.90626 7.26489 7.31539 7.76071 8.72275 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.004100 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.209045 B = 6827.107488 C = 9541.993946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.101 4.101 4 C -0.084 4.084 5 C -0.151 4.151 6 C 0.552 3.448 7 N -0.821 5.821 8 O -0.600 6.600 9 C -0.101 4.101 10 C 0.124 3.876 11 N -0.658 5.658 12 C 0.542 3.458 13 O -0.544 6.544 14 C -0.247 4.247 15 C -0.027 4.027 16 C -0.197 4.197 17 C -0.036 4.036 18 C -0.258 4.258 19 C 0.150 3.850 20 O -0.190 6.190 21 C -0.429 4.429 22 H 0.110 0.890 23 C -0.025 4.025 24 N -0.906 5.906 25 Si 1.024 2.976 26 H -0.249 1.249 27 H -0.276 1.276 28 H -0.252 1.252 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.420 0.580 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.424 0.576 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 16.450 9.314 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.118 4.118 4 C -0.103 4.103 5 C -0.155 4.155 6 C 0.339 3.661 7 N -0.386 5.386 8 O -0.481 6.481 9 C -0.122 4.122 10 C 0.029 3.971 11 N -0.307 5.307 12 C 0.334 3.666 13 O -0.421 6.421 14 C -0.252 4.252 15 C -0.046 4.046 16 C -0.216 4.216 17 C -0.054 4.054 18 C -0.277 4.277 19 C 0.094 3.906 20 O -0.093 6.093 21 C -0.504 4.504 22 H 0.127 0.873 23 C -0.224 4.224 24 N -0.542 5.542 25 Si 0.842 3.158 26 H -0.173 1.173 27 H -0.201 1.201 28 H -0.177 1.177 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.254 0.746 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.265 0.735 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.174 0.826 41 H 0.142 0.858 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.753 15.974 8.817 22.848 hybrid contribution 1.267 -0.938 -0.465 1.644 sum -12.486 15.036 8.352 21.254 Atomic orbital electron populations 1.20943 0.87535 1.04485 1.04448 1.20388 0.98507 0.90427 0.98881 1.21338 0.93305 0.98202 0.98998 1.21629 0.95251 0.96105 0.97336 1.19776 0.92241 0.94837 1.08679 1.18704 0.88469 0.84057 0.74908 1.43394 1.11444 1.07429 1.76343 1.90875 1.70989 1.34302 1.51984 1.21288 0.94361 0.98242 0.98339 1.17717 0.90100 0.86590 1.02659 1.43148 1.25926 1.08622 1.52960 1.18816 0.85642 0.84288 0.77892 1.90999 1.21921 1.82786 1.46345 1.19146 1.00031 0.92961 1.13046 1.21319 0.89673 0.99552 0.94029 1.21205 1.02510 0.92621 1.05223 1.21483 0.92427 0.99721 0.91788 1.21309 0.98537 0.98026 1.09801 1.20103 0.86268 0.94380 0.89830 1.84183 1.28113 1.35363 1.61598 1.22029 0.99983 0.89585 1.38835 0.87256 1.26856 0.95078 1.03038 0.97428 1.70356 1.09630 1.30916 1.43266 0.84609 0.77542 0.74787 0.78908 1.17301 1.20067 1.17651 0.88084 0.88212 0.91956 0.79836 0.80913 0.74591 0.75603 0.89182 0.73531 0.81923 0.81346 0.82583 0.85849 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.46 71.24 0.67 -0.81 16 2 C -0.08 -1.72 5.90 -19.68 -0.12 -1.83 16 3 C -0.10 -1.63 9.67 22.21 0.21 -1.41 16 4 C -0.08 -1.64 9.54 22.54 0.22 -1.42 16 5 C -0.15 -5.05 5.87 -20.10 -0.12 -5.16 16 6 C 0.55 19.74 8.05 86.79 0.70 20.44 16 7 N -0.82 -16.87 8.82 -175.59 -1.55 -18.41 16 8 O -0.60 -30.24 17.18 -3.87 -0.07 -30.31 16 9 C -0.10 -4.29 8.24 22.66 0.19 -4.10 16 10 C 0.12 4.19 6.28 38.13 0.24 4.43 16 11 N -0.66 -22.43 4.69 -306.48 -1.44 -23.87 16 12 C 0.54 25.97 7.61 86.69 0.66 26.63 16 13 O -0.54 -34.14 12.58 16.85 0.21 -33.92 16 14 C -0.25 -10.97 5.89 -19.99 -0.12 -11.09 16 15 C -0.03 -0.81 9.53 22.52 0.21 -0.60 16 16 C -0.20 -5.09 10.03 22.25 0.22 -4.87 16 17 C -0.04 -1.11 10.03 22.30 0.22 -0.89 16 18 C -0.26 -11.14 9.16 22.36 0.20 -10.94 16 19 C 0.15 7.92 6.66 22.91 0.15 8.07 16 20 O -0.19 -12.59 7.84 0.93 0.01 -12.58 16 21 C -0.43 -26.91 9.49 67.93 0.64 -26.27 16 22 H 0.11 6.08 5.20 -2.91 -0.02 6.07 16 23 C -0.02 -1.55 5.49 84.85 0.47 -1.08 16 24 N -0.91 -63.05 13.67 21.62 0.30 -62.75 16 25 Si 1.02 46.35 29.55 68.60 2.03 48.38 16 26 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 27 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 28 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.06 0.91 7.15 -2.39 -0.02 0.90 16 32 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.53 6.40 -2.91 -0.02 1.51 16 34 H 0.42 4.48 6.86 -92.71 -0.64 3.84 16 35 H 0.41 7.48 8.93 -92.71 -0.83 6.66 16 36 H 0.09 5.10 5.78 -2.91 -0.02 5.09 16 37 H 0.42 9.93 5.86 -92.71 -0.54 9.38 16 38 H 0.16 3.06 6.41 -2.91 -0.02 3.04 16 39 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 42 H 0.27 17.36 8.31 -92.71 -0.77 16.59 16 Total: -1.00 -111.44 359.48 3.29 -108.15 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.87 Total: 36.21 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 4.67 Total: -10.90 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -2.69 Total: -105.03 kcal Atomic # 8 Polarization: -76.96 SS G_CDS: 0.15 Total: -76.81 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -111.44 3.29 -108.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195214931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.665 kcal (2) G-P(sol) polarization free energy of solvation -111.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds