Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47119 * 90.72032 * 3 2 1 5 5 C 1.36868 * 120.00533 * 278.44240 * 4 3 2 6 6 H 1.07996 * 120.00608 * 173.87841 * 5 4 3 7 7 C 1.39051 * 119.99604 * 353.87771 * 5 4 3 8 8 N 1.31363 * 119.99966 * 30.91872 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 210.91969 * 7 5 4 10 10 H 1.48499 * 109.47410 * 94.96922 * 9 7 5 11 11 H 1.48506 * 109.47196 * 214.96286 * 9 7 5 12 12 H 1.48499 * 109.47229 * 334.96430 * 9 7 5 13 13 C 1.34782 * 120.00071 * 98.44497 * 4 3 2 14 14 O 1.21588 * 120.00332 * 186.39637 * 13 4 3 15 15 C 1.47732 * 119.99624 * 6.39230 * 13 4 3 16 16 C 1.39649 * 120.14812 * 150.85167 * 15 13 4 17 17 C 1.37937 * 119.84304 * 180.02562 * 16 15 13 18 18 C 1.38377 * 120.15265 * 359.97422 * 17 16 15 19 19 C 1.50700 * 119.84645 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46392 * 90.00711 * 19 18 17 21 21 H 1.08996 * 110.54065 * 56.39860 * 20 19 18 22 22 C 1.54237 * 110.53718 * 179.44802 * 20 19 18 23 23 C 1.51316 * 103.55377 * 118.82784 * 22 20 19 24 24 O 1.21227 * 125.39744 * 179.89429 * 23 22 20 25 25 N 1.33874 * 109.20474 * 359.63763 * 23 22 20 26 26 C 1.33877 * 114.48316 * 0.23631 * 25 23 22 27 27 O 1.21224 * 125.40423 * 179.97438 * 26 25 23 28 28 C 1.38377 * 120.30599 * 0.28683 * 18 17 16 29 29 C 1.37937 * 120.15075 * 359.47861 * 28 18 17 30 30 H 4.40635 * 5.51464 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47040 * 330.72051 * 3 2 1 32 32 H 1.09001 * 109.47125 * 210.72254 * 3 2 1 33 33 H 0.97008 * 119.99931 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.07950 * 359.97438 * 16 15 13 35 35 H 1.07995 * 119.92085 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47396 * 330.01377 * 19 18 17 37 37 H 1.08991 * 109.47282 * 210.00490 * 19 18 17 38 38 H 1.09002 * 110.71008 * 0.26656 * 22 20 19 39 39 H 1.08997 * 110.49981 * 237.29597 * 22 20 19 40 40 H 0.97009 * 122.76325 * 180.24179 * 25 23 22 41 41 H 1.08000 * 119.92621 * 179.71962 * 28 18 17 42 42 H 1.07996 * 120.07928 * 180.23903 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0182 -1.3810 5 6 3.1989 -1.1452 -2.0990 6 1 3.4639 -1.1199 -3.1457 7 6 2.9232 -2.3598 -1.4808 8 7 2.0638 -2.4117 -0.4887 9 14 3.7751 -3.9177 -2.0611 10 1 4.9754 -4.1671 -1.2230 11 1 2.8412 -5.0662 -1.9422 12 1 4.1859 -3.7584 -3.4792 13 6 3.5200 1.1802 -1.9447 14 8 3.8145 1.2157 -3.1239 15 6 3.5849 2.4107 -1.1298 16 6 4.4971 3.4179 -1.4519 17 6 4.5527 4.5640 -0.6864 18 6 3.7071 4.7172 0.3982 19 6 3.7741 5.9720 1.2301 20 6 2.8130 7.0155 0.6572 21 1 1.8001 6.6161 0.6075 22 6 2.8517 8.3070 1.4996 23 6 3.3223 9.3572 0.5171 24 8 3.4904 10.5307 0.7705 25 7 3.5289 8.7840 -0.6749 26 6 3.2741 7.4702 -0.7104 27 8 3.3932 6.7577 -1.6839 28 6 2.8046 3.7208 0.7262 29 6 2.7349 2.5717 -0.0336 30 1 -1.0500 0.0002 0.0000 31 1 3.0097 -0.8956 0.5026 32 1 3.0089 0.8843 0.5250 33 1 1.8712 -3.2592 -0.0577 34 1 5.1579 3.2994 -2.2978 35 1 5.2573 5.3439 -0.9346 36 1 4.7904 6.3657 1.2126 37 1 3.4910 5.7424 2.2573 38 1 3.5584 8.2086 2.3236 39 1 1.8568 8.5492 1.8729 40 1 3.8379 9.2798 -1.4494 41 1 2.1506 3.8449 1.5766 42 1 2.0274 1.7965 0.2212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281473483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = 27.810483 kcal Electronic energy + Delta-G solvation = -28635.709655 eV Core-core repulsion = 24549.596080 eV Total energy + Delta-G solvation = -4086.113575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14916 -39.77032 -38.92212 -37.76341 -36.21604 -35.37564 -34.38775 -32.49615 -31.41017 -30.99947 -30.47604 -27.79224 -26.56811 -25.49693 -24.51921 -22.34501 -22.21856 -21.88303 -20.59749 -19.50631 -18.18964 -18.06318 -17.15657 -16.82515 -16.42251 -16.37878 -15.77650 -15.44879 -14.85037 -14.79246 -14.52131 -14.34506 -14.26177 -14.05735 -13.80405 -13.65138 -13.50674 -13.25537 -12.68721 -12.47085 -12.26637 -12.03752 -11.97014 -11.71222 -11.45738 -11.20961 -11.05247 -10.72472 -10.62447 -10.58287 -10.35079 -10.31071 -10.12358 -9.49293 -9.34107 -8.85679 -8.54035 -8.45697 -8.16475 -8.05934 -6.52270 -3.81634 1.16636 1.40550 1.81001 2.40299 2.44869 3.10548 3.22112 3.27605 3.56191 3.70300 3.76048 3.85489 3.89335 3.97066 4.10539 4.33365 4.51373 4.78497 4.80179 4.90784 5.01093 5.05069 5.16551 5.22813 5.32403 5.41710 5.50472 5.57087 5.64647 5.65763 5.86679 6.00964 6.20793 6.28546 6.31373 6.40944 6.72985 6.81119 6.83261 6.93784 6.95445 6.99372 7.33200 7.44934 7.53956 7.96991 8.35252 8.72504 9.05360 9.26999 9.86821 10.46780 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002553 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.846417 B =10964.029170 C =11551.703419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.112 4.112 3 C 0.190 3.810 4 N -0.423 5.423 5 C -0.315 4.315 6 H 0.112 0.888 7 C 0.038 3.962 8 N -0.844 5.844 9 Si 0.916 3.084 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.470 3.530 14 O -0.586 6.586 15 C -0.088 4.088 16 C -0.076 4.076 17 C -0.093 4.093 18 C -0.102 4.102 19 C -0.059 4.059 20 C -0.121 4.121 21 H 0.128 0.872 22 C -0.156 4.156 23 C 0.531 3.469 24 O -0.491 6.491 25 N -0.684 5.684 26 C 0.522 3.478 27 O -0.450 6.450 28 C -0.118 4.118 29 C -0.133 4.133 30 H 0.201 0.799 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.414 0.586 41 H 0.120 0.880 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 17.262 10.543 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.114 4.114 3 C 0.068 3.932 4 N -0.139 5.139 5 C -0.442 4.442 6 H 0.130 0.870 7 C -0.168 4.168 8 N -0.480 5.480 9 Si 0.742 3.258 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.260 3.740 14 O -0.472 6.472 15 C -0.092 4.092 16 C -0.096 4.096 17 C -0.111 4.111 18 C -0.103 4.103 19 C -0.096 4.096 20 C -0.142 4.142 21 H 0.146 0.854 22 C -0.195 4.195 23 C 0.319 3.681 24 O -0.363 6.363 25 N -0.350 5.350 26 C 0.308 3.692 27 O -0.318 6.318 28 C -0.136 4.136 29 C -0.151 4.151 30 H 0.218 0.782 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.253 0.747 41 H 0.138 0.862 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.645 17.192 9.816 19.807 hybrid contribution 0.032 -0.702 -0.681 0.978 sum 0.677 16.490 9.136 18.863 Atomic orbital electron populations 1.24330 0.95409 1.05766 1.01747 1.22926 0.94157 0.95649 0.98655 1.19504 0.84408 1.03692 0.85618 1.43706 1.52495 1.06733 1.10951 1.19760 1.45734 0.81889 0.96827 0.87025 1.25301 0.95315 0.99574 0.96605 1.70213 1.26092 1.27364 1.24354 0.86074 0.79548 0.80407 0.79788 1.20133 1.21069 1.19106 1.17817 0.86018 0.82693 0.87427 1.90608 1.56033 1.84885 1.15657 1.20269 0.97103 0.96003 0.95816 1.21103 0.97532 0.92340 0.98612 1.20722 0.98995 0.96735 0.94672 1.19604 0.98116 0.95381 0.97175 1.20465 0.98523 0.91531 0.99099 1.22163 1.04016 0.96245 0.91818 0.85370 1.22622 1.06078 0.92057 0.98769 1.20814 0.75000 0.88759 0.83558 1.90817 1.48874 1.16363 1.80250 1.44859 1.62529 1.12480 1.15154 1.20837 0.75981 0.80946 0.91390 1.90921 1.46836 1.56854 1.37210 1.20852 0.98857 0.93504 1.00369 1.22388 0.99853 0.98259 0.94602 0.78177 0.86856 0.88720 0.91827 0.85625 0.86929 0.90562 0.88865 0.85799 0.85933 0.74682 0.86176 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.11 19.25 29.55 0.57 -4.54 16 2 C -0.11 -2.47 9.65 -37.12 -0.36 -2.83 16 3 C 0.19 4.19 4.76 -6.83 -0.03 4.16 16 4 N -0.42 -10.83 2.61 -119.05 -0.31 -11.14 16 5 C -0.32 -8.68 9.34 -15.00 -0.14 -8.82 16 6 H 0.11 3.28 7.33 -52.49 -0.38 2.89 16 7 C 0.04 0.97 5.00 -17.45 -0.09 0.88 16 8 N -0.84 -21.25 9.05 55.50 0.50 -20.75 16 9 Si 0.92 20.05 29.65 -169.99 -5.04 15.01 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.47 11.97 7.42 -12.38 -0.09 11.87 16 14 O -0.59 -16.94 16.29 5.29 0.09 -16.86 16 15 C -0.09 -1.82 5.60 -104.96 -0.59 -2.41 16 16 C -0.08 -1.41 9.60 -39.17 -0.38 -1.79 16 17 C -0.09 -1.36 7.43 -39.64 -0.29 -1.66 16 18 C -0.10 -1.24 4.74 -104.52 -0.50 -1.74 16 19 C -0.06 -0.42 4.69 -27.88 -0.13 -0.55 16 20 C -0.12 -0.78 3.13 -90.82 -0.28 -1.06 16 21 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.16 -0.65 6.67 -26.93 -0.18 -0.83 16 23 C 0.53 3.92 8.55 -11.09 -0.09 3.83 16 24 O -0.49 -5.32 18.02 5.60 0.10 -5.22 16 25 N -0.68 -5.06 5.48 -11.39 -0.06 -5.12 16 26 C 0.52 4.85 7.67 -11.08 -0.09 4.76 16 27 O -0.45 -6.16 15.04 5.61 0.08 -6.07 16 28 C -0.12 -1.57 9.68 -39.64 -0.38 -1.95 16 29 C -0.13 -2.32 7.51 -39.17 -0.29 -2.61 16 30 H 0.20 3.24 7.80 -54.09 -0.42 2.82 16 31 H 0.11 2.62 6.10 -51.93 -0.32 2.31 16 32 H 0.10 1.81 3.98 -52.41 -0.21 1.60 16 33 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.13 2.39 7.91 -52.49 -0.42 1.97 16 35 H 0.11 1.46 7.67 -52.49 -0.40 1.06 16 36 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.12 0.31 7.74 -51.93 -0.40 -0.09 16 39 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.41 2.65 8.96 -40.82 -0.37 2.28 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.16 2.80 3.08 -52.49 -0.16 2.64 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -35.24 357.53 -6.92 -42.16 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.32 Total: 7.89 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.35 Total: -5.28 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.13 Total: -37.02 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: 0.27 Total: -28.15 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.24 -6.92 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281473483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.973 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds