Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17389 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47119 * 90.72032 * 3 2 1 5 5 C 1.36868 * 120.00533 * 278.44240 * 4 3 2 6 6 H 1.07996 * 120.00608 * 173.87841 * 5 4 3 7 7 C 1.39051 * 119.99604 * 353.87771 * 5 4 3 8 8 N 1.31363 * 119.99966 * 30.91872 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 210.91969 * 7 5 4 10 10 H 1.48499 * 109.47410 * 94.96922 * 9 7 5 11 11 H 1.48506 * 109.47196 * 214.96286 * 9 7 5 12 12 H 1.48499 * 109.47229 * 334.96430 * 9 7 5 13 13 C 1.34782 * 120.00071 * 98.44497 * 4 3 2 14 14 O 1.21588 * 120.00332 * 186.39637 * 13 4 3 15 15 C 1.47732 * 119.99624 * 6.39230 * 13 4 3 16 16 C 1.39649 * 120.14812 * 150.85167 * 15 13 4 17 17 C 1.37937 * 119.84304 * 180.02562 * 16 15 13 18 18 C 1.38377 * 120.15265 * 359.97422 * 17 16 15 19 19 C 1.50700 * 119.84645 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46392 * 90.00711 * 19 18 17 21 21 H 1.08996 * 110.54065 * 56.39860 * 20 19 18 22 22 C 1.54237 * 110.53718 * 179.44802 * 20 19 18 23 23 C 1.51316 * 103.55377 * 118.82784 * 22 20 19 24 24 O 1.21227 * 125.39744 * 179.89429 * 23 22 20 25 25 N 1.33874 * 109.20474 * 359.63763 * 23 22 20 26 26 C 1.33877 * 114.48316 * 0.23631 * 25 23 22 27 27 O 1.21224 * 125.40423 * 179.97438 * 26 25 23 28 28 C 1.38377 * 120.30599 * 0.28683 * 18 17 16 29 29 C 1.37937 * 120.15075 * 359.47861 * 28 18 17 30 30 H 4.40635 * 5.51464 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47040 * 330.72051 * 3 2 1 32 32 H 1.09001 * 109.47125 * 210.72254 * 3 2 1 33 33 H 0.97008 * 119.99931 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.07950 * 359.97438 * 16 15 13 35 35 H 1.07995 * 119.92085 * 180.02562 * 17 16 15 36 36 H 1.08999 * 109.47396 * 330.01377 * 19 18 17 37 37 H 1.08991 * 109.47282 * 210.00490 * 19 18 17 38 38 H 1.09002 * 110.71008 * 0.26656 * 22 20 19 39 39 H 1.08997 * 110.49981 * 237.29597 * 22 20 19 40 40 H 0.97009 * 122.76325 * 180.24179 * 25 23 22 41 41 H 1.08000 * 119.92621 * 179.71962 * 28 18 17 42 42 H 1.07996 * 120.07928 * 180.23903 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0182 -1.3810 5 6 3.1989 -1.1452 -2.0990 6 1 3.4639 -1.1199 -3.1457 7 6 2.9232 -2.3598 -1.4808 8 7 2.0638 -2.4117 -0.4887 9 14 3.7751 -3.9177 -2.0611 10 1 4.9754 -4.1671 -1.2230 11 1 2.8412 -5.0662 -1.9422 12 1 4.1859 -3.7584 -3.4792 13 6 3.5200 1.1802 -1.9447 14 8 3.8145 1.2157 -3.1239 15 6 3.5849 2.4107 -1.1298 16 6 4.4971 3.4179 -1.4519 17 6 4.5527 4.5640 -0.6864 18 6 3.7071 4.7172 0.3982 19 6 3.7741 5.9720 1.2301 20 6 2.8130 7.0155 0.6572 21 1 1.8001 6.6161 0.6075 22 6 2.8517 8.3070 1.4996 23 6 3.3223 9.3572 0.5171 24 8 3.4904 10.5307 0.7705 25 7 3.5289 8.7840 -0.6749 26 6 3.2741 7.4702 -0.7104 27 8 3.3932 6.7577 -1.6839 28 6 2.8046 3.7208 0.7262 29 6 2.7349 2.5717 -0.0336 30 1 -1.0500 0.0002 0.0000 31 1 3.0097 -0.8956 0.5026 32 1 3.0089 0.8843 0.5250 33 1 1.8712 -3.2592 -0.0577 34 1 5.1579 3.2994 -2.2978 35 1 5.2573 5.3439 -0.9346 36 1 4.7904 6.3657 1.2126 37 1 3.4910 5.7424 2.2573 38 1 3.5584 8.2086 2.3236 39 1 1.8568 8.5492 1.8729 40 1 3.8379 9.2798 -1.4494 41 1 2.1506 3.8449 1.5766 42 1 2.0274 1.7965 0.2212 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281473483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 2.885908 kcal Electronic energy + Delta-G solvation = -28636.790466 eV Core-core repulsion = 24549.596080 eV Total energy + Delta-G solvation = -4087.194386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77243 -41.30864 -39.78173 -39.13771 -37.31125 -36.95829 -35.26410 -34.19324 -33.18499 -32.03853 -31.79167 -28.81034 -28.18429 -26.83217 -25.71443 -23.61890 -23.23305 -22.60773 -21.41793 -21.00066 -19.87259 -18.84985 -18.53427 -18.16648 -17.72894 -17.19284 -17.04384 -16.49224 -16.40522 -16.03890 -15.87477 -15.64077 -15.36955 -15.14456 -14.94669 -14.74916 -14.51581 -14.33436 -14.12584 -13.87693 -13.67239 -13.43210 -13.05782 -12.94697 -12.71564 -12.46530 -12.27031 -12.16567 -12.05284 -11.57287 -11.49377 -11.34402 -11.24189 -11.08160 -10.96205 -10.66301 -10.41698 -10.07783 -9.68772 -9.48153 -8.47617 -5.88140 0.08008 0.50482 0.59534 1.33508 1.39532 1.50775 1.80076 1.88091 1.91287 2.10316 2.26468 2.32391 2.80143 2.98674 3.20776 3.25381 3.32294 3.48106 3.87851 3.95151 4.00782 4.04490 4.13215 4.16894 4.41651 4.54522 4.58531 4.64447 4.78799 4.85639 4.94155 4.99095 5.03229 5.09488 5.18978 5.20131 5.37646 5.41055 5.47836 5.60876 5.67935 5.70713 5.98017 6.12925 6.36031 6.39200 6.91120 7.05946 7.09435 7.33029 7.93158 8.49636 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002553 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.846417 B =10964.029170 C =11551.703419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.155 4.155 3 C 0.195 3.805 4 N -0.433 5.433 5 C -0.366 4.366 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.846 5.846 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.454 3.546 14 O -0.644 6.644 15 C -0.125 4.125 16 C -0.097 4.097 17 C -0.090 4.090 18 C -0.076 4.076 19 C -0.058 4.058 20 C -0.113 4.113 21 H 0.144 0.856 22 C -0.136 4.136 23 C 0.531 3.469 24 O -0.528 6.528 25 N -0.683 5.683 26 C 0.519 3.481 27 O -0.505 6.505 28 C -0.103 4.103 29 C -0.140 4.140 30 H 0.238 0.762 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.279 0.721 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.413 0.587 41 H 0.171 0.829 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 18.955 15.062 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.157 4.157 3 C 0.074 3.926 4 N -0.147 5.147 5 C -0.493 4.493 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.481 5.481 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.194 1.194 12 H -0.206 1.206 13 C 0.247 3.753 14 O -0.534 6.534 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.108 4.108 18 C -0.077 4.077 19 C -0.095 4.095 20 C -0.134 4.134 21 H 0.161 0.839 22 C -0.175 4.175 23 C 0.322 3.678 24 O -0.403 6.403 25 N -0.347 5.347 26 C 0.308 3.692 27 O -0.377 6.377 28 C -0.120 4.120 29 C -0.158 4.158 30 H 0.255 0.745 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.252 0.748 41 H 0.189 0.811 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.778 18.893 14.407 23.772 hybrid contribution 0.425 -1.042 -2.061 2.348 sum -0.353 17.852 12.346 21.708 Atomic orbital electron populations 1.25232 0.96341 1.03903 0.99679 1.23108 0.94667 0.97404 1.00508 1.19551 0.85095 1.04223 0.83730 1.43858 1.52562 1.06207 1.12118 1.19531 1.49535 0.84018 0.96199 0.90916 1.25931 0.94913 1.01370 0.96737 1.70262 1.25273 1.28400 1.24187 0.85172 0.78948 0.77077 0.78593 1.18816 1.19440 1.20618 1.18758 0.84851 0.84271 0.87426 1.90527 1.58362 1.86185 1.18335 1.19965 1.00424 0.94649 0.97752 1.21059 0.97687 0.93827 0.99123 1.20936 0.99811 0.95204 0.94816 1.20188 0.95043 0.96890 0.95548 1.20686 1.00017 0.88681 1.00140 1.22207 1.04295 0.97147 0.89780 0.83874 1.22705 1.08358 0.88585 0.97832 1.21439 0.73828 0.88812 0.83768 1.90814 1.50563 1.18212 1.80728 1.44957 1.61849 1.12232 1.15697 1.21479 0.74727 0.80943 0.92079 1.90921 1.49307 1.58115 1.39336 1.21348 0.98833 0.91426 1.00397 1.22348 0.99145 1.00122 0.94207 0.74516 0.88546 0.85873 0.91051 0.88273 0.85440 0.89073 0.84341 0.82830 0.83016 0.74778 0.81126 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.03 19.25 74.32 1.43 -7.60 16 2 C -0.16 -6.83 9.65 31.13 0.30 -6.53 16 3 C 0.20 8.88 4.76 84.58 0.40 9.28 16 4 N -0.43 -23.69 2.61 -648.83 -1.69 -25.38 16 5 C -0.37 -21.65 9.34 84.10 0.79 -20.86 16 6 H 0.07 4.73 7.33 -2.91 -0.02 4.71 16 7 C 0.02 0.89 5.00 84.96 0.42 1.31 16 8 N -0.85 -43.01 9.05 21.68 0.20 -42.81 16 9 Si 0.98 42.27 29.65 68.60 2.03 44.30 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.45 25.19 7.42 86.75 0.64 25.83 16 14 O -0.64 -41.24 16.29 -3.99 -0.07 -41.30 16 15 C -0.12 -5.41 5.60 -20.09 -0.11 -5.52 16 16 C -0.10 -3.81 9.60 22.54 0.22 -3.59 16 17 C -0.09 -2.54 7.43 22.23 0.17 -2.37 16 18 C -0.08 -1.54 4.74 -19.80 -0.09 -1.64 16 19 C -0.06 -0.46 4.69 29.85 0.14 -0.32 16 20 C -0.11 -0.82 3.13 -10.92 -0.03 -0.85 16 21 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 22 C -0.14 -0.29 6.67 30.46 0.20 -0.09 16 23 C 0.53 6.06 8.55 87.99 0.75 6.81 16 24 O -0.53 -10.24 18.02 -2.87 -0.05 -10.29 16 25 N -0.68 -8.70 5.48 -427.79 -2.34 -11.04 16 26 C 0.52 8.32 7.67 87.99 0.68 8.99 16 27 O -0.50 -13.48 15.04 -2.86 -0.04 -13.52 16 28 C -0.10 -2.30 9.68 22.23 0.22 -2.08 16 29 C -0.14 -4.77 7.51 22.54 0.17 -4.60 16 30 H 0.24 6.91 7.80 -4.42 -0.03 6.88 16 31 H 0.10 4.61 6.10 -2.39 -0.01 4.60 16 32 H 0.12 4.77 3.98 -2.84 -0.01 4.76 16 33 H 0.28 13.11 8.31 -92.70 -0.77 12.34 16 34 H 0.10 4.24 7.91 -2.91 -0.02 4.22 16 35 H 0.13 3.18 7.67 -2.91 -0.02 3.16 16 36 H 0.09 0.59 8.08 -2.39 -0.02 0.57 16 37 H 0.14 0.07 8.08 -2.39 -0.02 0.06 16 38 H 0.15 -0.41 7.74 -2.39 -0.02 -0.43 16 39 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.41 5.02 8.96 -92.70 -0.83 4.19 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.15 5.26 3.08 -2.91 -0.01 5.25 16 Total: -1.00 -87.98 357.53 4.58 -83.40 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.26 Total: 20.49 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 6.28 Total: -3.84 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.84 Total: -79.23 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -0.16 Total: -65.11 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -87.98 4.58 -83.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281473483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.282 kcal (2) G-P(sol) polarization free energy of solvation -87.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds