Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47112 * 357.55596 * 3 2 1 5 5 C 1.36872 * 119.99799 * 271.89154 * 4 3 2 6 6 H 1.08006 * 119.99555 * 193.00606 * 5 4 3 7 7 C 1.39045 * 120.00429 * 13.00005 * 5 4 3 8 8 N 1.31368 * 119.99855 * 13.98595 * 7 5 4 9 9 Si 1.86804 * 120.00421 * 193.97912 * 7 5 4 10 10 H 1.48495 * 109.46936 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46858 * 119.99997 * 9 7 5 12 12 H 1.48495 * 109.47072 * 240.00589 * 9 7 5 13 13 C 1.34769 * 120.00139 * 91.89375 * 4 3 2 14 14 O 1.21592 * 120.00207 * 184.58111 * 13 4 3 15 15 C 1.47729 * 119.99646 * 4.58097 * 13 4 3 16 16 C 1.39647 * 120.15169 * 308.21001 * 15 13 4 17 17 C 1.37940 * 119.84493 * 179.77008 * 16 15 13 18 18 C 1.38381 * 120.14911 * 0.51180 * 17 16 15 19 19 C 1.50697 * 119.84343 * 179.72283 * 18 17 16 20 20 C 1.53006 * 109.47006 * 270.01821 * 19 18 17 21 21 H 1.08995 * 110.54130 * 303.60709 * 20 19 18 22 22 C 1.54231 * 110.60498 * 180.58891 * 20 19 18 23 23 C 1.51308 * 103.55736 * 241.48448 * 22 20 19 24 24 O 1.21225 * 125.40151 * 179.97438 * 23 22 20 25 25 N 1.33885 * 109.20802 * 0.02562 * 23 22 20 26 26 C 1.33879 * 114.47211 * 359.97438 * 25 23 22 27 27 O 1.21224 * 125.39376 * 179.97438 * 26 25 23 28 28 C 1.38375 * 120.30873 * 359.74068 * 18 17 16 29 29 C 1.37940 * 120.14823 * 0.02562 * 28 18 17 30 30 H 4.40642 * 5.51454 * 180.02562 * 4 1 2 31 31 H 1.08992 * 109.47254 * 117.55817 * 3 2 1 32 32 H 1.09001 * 109.46989 * 237.55936 * 3 2 1 33 33 H 0.96994 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.07990 * 120.07583 * 0.02562 * 16 15 13 35 35 H 1.07992 * 119.92519 * 180.27391 * 17 16 15 36 36 H 1.08998 * 109.47403 * 30.02147 * 19 18 17 37 37 H 1.09000 * 109.47119 * 150.02485 * 19 18 17 38 38 H 1.09003 * 110.60807 * 0.02562 * 22 20 19 39 39 H 1.09001 * 110.60263 * 122.96806 * 22 20 19 40 40 H 0.97001 * 122.75996 * 180.02562 * 25 23 22 41 41 H 1.07996 * 119.92674 * 179.97438 * 28 18 17 42 42 H 1.08000 * 120.07238 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3791 0.0589 5 6 3.3264 -1.9861 1.2706 6 1 3.8779 -2.9129 1.3291 7 6 2.8111 -1.4096 2.4263 8 7 1.9195 -0.4487 2.3396 9 14 3.3864 -2.0016 4.1020 10 1 4.3874 -3.0844 3.9276 11 1 4.0043 -0.8713 4.8409 12 1 2.2254 -2.5192 4.8696 13 6 3.3962 -2.0506 -1.0800 14 8 3.7219 -3.2212 -1.0345 15 6 3.2869 -1.3644 -2.3836 16 6 2.1242 -0.6645 -2.7126 17 6 2.0308 -0.0221 -3.9297 18 6 3.0818 -0.0790 -4.8281 19 6 2.9699 0.6202 -6.1584 20 6 2.3704 -0.3383 -7.1894 21 1 2.9672 -1.2477 -7.2586 22 6 2.2577 0.3471 -8.5664 23 6 0.7713 0.3325 -8.8493 24 8 0.2412 0.7801 -9.8433 25 7 0.1342 -0.2521 -7.8272 26 6 0.9358 -0.6677 -6.8387 27 8 0.5701 -1.2198 -5.8233 28 6 4.2348 -0.7751 -4.5107 29 6 4.3435 -1.4180 -3.2952 30 1 -1.0499 -0.0004 -0.0002 31 1 3.0091 0.4762 -0.9110 32 1 3.0090 0.5521 0.8673 33 1 1.5603 -0.0463 3.1457 34 1 1.3016 -0.6229 -2.0141 35 1 1.1339 0.5232 -4.1836 36 1 2.3260 1.4937 -6.0567 37 1 3.9601 0.9350 -6.4878 38 1 2.6291 1.3707 -8.5171 39 1 2.7978 -0.2216 -9.3233 40 1 -0.8289 -0.3659 -7.8050 41 1 5.0511 -0.8158 -5.2167 42 1 5.2438 -1.9614 -3.0490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281473490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -22.503186 kcal Electronic energy + Delta-G solvation = -28756.806842 eV Core-core repulsion = 24668.511502 eV Total energy + Delta-G solvation = -4088.295339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.76882 -41.13947 -39.78827 -39.17167 -37.21337 -36.95548 -35.19558 -34.00253 -33.18222 -32.01591 -31.74173 -28.78650 -28.15313 -26.74632 -25.71144 -23.54200 -23.33915 -22.61654 -21.39182 -20.95757 -19.80536 -18.84715 -18.55465 -18.19953 -17.72827 -17.23244 -17.01044 -16.50957 -16.31956 -16.01632 -15.86812 -15.46288 -15.35658 -15.21921 -14.98118 -14.56973 -14.48075 -14.24777 -14.02824 -13.96527 -13.71170 -13.47889 -13.13610 -12.96220 -12.80610 -12.49206 -12.30181 -12.17766 -12.07547 -11.82899 -11.51426 -11.33997 -11.33547 -11.04151 -10.98032 -10.60863 -10.46354 -9.96092 -9.72696 -9.47101 -8.31923 -5.98572 0.17806 0.52240 0.61744 1.34051 1.39238 1.53289 1.80233 1.87947 1.89450 2.08182 2.30284 2.39167 2.84187 3.03812 3.17937 3.23561 3.32257 3.48326 3.85363 3.99087 4.00655 4.04342 4.13975 4.18174 4.42301 4.56436 4.61418 4.63615 4.79836 4.85668 4.94914 4.98567 5.00193 5.09485 5.19089 5.21550 5.38754 5.40930 5.48929 5.65945 5.69198 5.71031 5.98360 6.13815 6.36321 6.39073 6.91246 7.05872 7.12732 7.32744 7.89445 8.60766 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.002658 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.716308 B =10533.502634 C =11116.973285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.127 4.127 3 C 0.238 3.762 4 N -0.441 5.441 5 C -0.350 4.350 6 H 0.077 0.923 7 C 0.000 4.000 8 N -0.872 5.872 9 Si 0.994 3.006 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.278 1.278 13 C 0.468 3.532 14 O -0.635 6.635 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.091 4.091 18 C -0.077 4.077 19 C -0.058 4.058 20 C -0.113 4.113 21 H 0.144 0.856 22 C -0.136 4.136 23 C 0.531 3.469 24 O -0.528 6.528 25 N -0.683 5.683 26 C 0.518 3.482 27 O -0.505 6.505 28 C -0.101 4.101 29 C -0.099 4.099 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.274 0.726 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.413 0.587 41 H 0.173 0.827 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 9.627 -21.834 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.129 4.129 3 C 0.116 3.884 4 N -0.156 5.156 5 C -0.477 4.477 6 H 0.095 0.905 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.818 3.182 10 H -0.200 1.200 11 H -0.186 1.186 12 H -0.203 1.203 13 C 0.259 3.741 14 O -0.524 6.524 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.077 4.077 19 C -0.095 4.095 20 C -0.134 4.134 21 H 0.162 0.838 22 C -0.175 4.175 23 C 0.321 3.679 24 O -0.403 6.403 25 N -0.348 5.348 26 C 0.307 3.693 27 O -0.377 6.377 28 C -0.118 4.118 29 C -0.118 4.118 30 H 0.247 0.753 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.252 0.748 41 H 0.190 0.810 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.184 9.172 -21.592 23.561 hybrid contribution -1.299 -0.980 1.768 2.403 sum 0.885 8.192 -19.824 21.468 Atomic orbital electron populations 1.25023 0.96257 1.00384 1.06321 1.23109 0.94662 0.99819 0.95301 1.18400 0.84898 0.83450 1.01617 1.43863 1.54897 1.11893 1.04995 1.19721 1.35003 1.09296 0.83701 0.90480 1.26100 0.94621 0.96794 1.02791 1.70098 1.24981 1.25657 1.30210 0.84867 0.78069 0.78468 0.76829 1.19969 1.18597 1.20340 1.18916 0.83884 0.86376 0.84956 1.90543 1.55956 1.18143 1.87726 1.19944 0.97535 1.00682 0.94596 1.21550 0.96590 0.96794 0.98470 1.20927 0.98686 0.98893 0.92350 1.20168 0.93049 0.97932 0.96574 1.20678 1.05247 0.95832 0.87754 1.22202 0.92053 1.03264 0.95851 0.83813 1.22702 0.90495 1.07416 0.96851 1.21447 0.92511 0.73662 0.80253 1.90813 1.75005 1.45691 1.28819 1.44965 1.13332 1.55276 1.21197 1.21494 0.90924 0.75644 0.81231 1.90921 1.81417 1.39074 1.26260 1.21266 0.98796 0.96359 0.95394 1.21260 0.97177 0.99055 0.94269 0.75312 0.89712 0.88415 0.91495 0.87269 0.85862 0.89230 0.84300 0.82869 0.82950 0.74799 0.80973 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.17 18.82 74.32 1.40 -9.77 16 2 C -0.13 -5.98 8.59 31.13 0.27 -5.71 16 3 C 0.24 11.39 4.75 84.57 0.40 11.79 16 4 N -0.44 -24.29 2.58 -648.84 -1.67 -25.96 16 5 C -0.35 -20.57 9.43 84.10 0.79 -19.78 16 6 H 0.08 4.86 7.30 -2.91 -0.02 4.84 16 7 C 0.00 -0.01 5.13 84.96 0.44 0.43 16 8 N -0.87 -45.91 8.55 21.68 0.19 -45.73 16 9 Si 0.99 42.99 29.58 68.60 2.03 45.02 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 13 C 0.47 25.57 7.15 86.75 0.62 26.19 16 14 O -0.63 -39.65 16.69 -4.00 -0.07 -39.72 16 15 C -0.12 -5.34 4.79 -20.09 -0.10 -5.43 16 16 C -0.12 -4.46 7.67 22.54 0.17 -4.29 16 17 C -0.09 -2.60 7.43 22.23 0.17 -2.44 16 18 C -0.08 -1.56 4.74 -19.80 -0.09 -1.66 16 19 C -0.06 -0.47 4.69 29.85 0.14 -0.33 16 20 C -0.11 -0.83 3.13 -10.92 -0.03 -0.86 16 21 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 22 C -0.14 -0.31 6.67 30.46 0.20 -0.10 16 23 C 0.53 6.20 8.55 87.99 0.75 6.95 16 24 O -0.53 -10.38 18.02 -2.86 -0.05 -10.43 16 25 N -0.68 -8.98 5.48 -427.79 -2.34 -11.32 16 26 C 0.52 8.49 7.67 87.99 0.68 9.17 16 27 O -0.50 -13.70 15.04 -2.86 -0.04 -13.74 16 28 C -0.10 -2.20 9.68 22.23 0.22 -1.99 16 29 C -0.10 -3.34 9.75 22.54 0.22 -3.12 16 30 H 0.23 7.80 7.80 -4.42 -0.03 7.77 16 31 H 0.09 3.58 5.86 -2.39 -0.01 3.56 16 32 H 0.10 4.87 6.40 -2.39 -0.02 4.85 16 33 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.11 4.72 4.56 -2.92 -0.01 4.71 16 35 H 0.12 3.25 7.67 -2.91 -0.02 3.22 16 36 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 37 H 0.14 0.06 8.08 -2.39 -0.02 0.04 16 38 H 0.15 -0.39 7.74 -2.39 -0.02 -0.41 16 39 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.41 5.23 8.96 -92.71 -0.83 4.40 16 41 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -86.93 359.07 4.53 -82.40 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.26 Total: 20.43 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 6.24 Total: -0.94 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.83 Total: -83.01 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -0.16 Total: -63.89 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -86.93 4.53 -82.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281473490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.899 kcal (2) G-P(sol) polarization free energy of solvation -86.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds