Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00460 * 2 1 4 4 H 1.48509 * 109.46794 * 269.99969 * 3 2 1 5 5 H 1.48506 * 109.46804 * 29.99387 * 3 2 1 6 6 H 1.48491 * 109.47396 * 149.99686 * 3 2 1 7 7 C 1.37883 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99766 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00154 * 79.04604 * 10 9 7 12 12 C 1.50697 * 109.47064 * 89.99758 * 11 10 9 13 13 C 1.38674 * 120.41842 * 89.99853 * 12 11 10 14 14 C 1.38623 * 118.42265 * 179.97438 * 13 12 11 15 15 C 1.38228 * 119.16454 * 0.25309 * 14 13 12 16 16 N 1.31859 * 120.75893 * 359.50207 * 15 14 13 17 17 C 1.31883 * 121.72301 * 0.49070 * 16 15 14 18 18 C 1.34769 * 119.99866 * 259.04637 * 10 9 7 19 19 O 1.21529 * 120.00351 * 181.48796 * 18 10 9 20 20 C 1.48049 * 120.00467 * 1.48651 * 18 10 9 21 21 C 1.39555 * 119.98828 * 23.35821 * 20 18 10 22 22 C 1.37824 * 120.00256 * 179.72331 * 21 20 18 23 23 C 1.39595 * 119.99283 * 0.57568 * 22 21 20 24 24 C 1.47927 * 120.00584 * 179.67695 * 23 22 21 25 25 O 1.21448 * 119.99850 * 180.02562 * 24 23 22 26 26 O 1.34682 * 119.99990 * 0.02562 * 24 23 22 27 27 C 1.39608 * 119.99129 * 359.69741 * 23 22 21 28 28 C 1.37817 * 119.99130 * 0.02562 * 27 23 22 29 29 H 0.97009 * 119.99644 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47368 * 59.99816 * 9 7 2 31 31 H 1.09003 * 109.47060 * 299.99836 * 9 7 2 32 32 H 1.08997 * 109.47030 * 330.00237 * 11 10 9 33 33 H 1.08994 * 109.47332 * 209.99896 * 11 10 9 34 34 H 1.07998 * 120.78570 * 359.96302 * 13 12 11 35 35 H 1.08003 * 120.41831 * 179.97438 * 14 13 12 36 36 H 1.07995 * 119.62080 * 179.74467 * 15 14 13 37 37 H 1.08009 * 119.61414 * 179.75163 * 17 16 15 38 38 H 1.07995 * 120.00320 * 0.02562 * 21 20 18 39 39 H 1.07997 * 120.00134 * 180.27797 * 22 21 20 40 40 H 0.96701 * 117.00506 * 179.97438 * 26 24 23 41 41 H 1.07999 * 120.00455 * 179.97438 * 27 23 22 42 42 H 1.07998 * 119.99485 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.0171 -3.3462 -1.2448 12 6 5.3383 -3.1454 -1.9413 13 6 6.4059 -3.9905 -1.6788 14 6 7.6021 -3.7684 -2.3432 15 6 7.6919 -2.7161 -3.2351 16 7 6.6543 -1.9353 -3.4635 17 6 5.5011 -2.1172 -2.8499 18 6 4.4330 -3.1371 1.1469 19 8 4.8633 -4.2736 1.1419 20 6 4.3848 -2.3695 2.4120 21 6 3.4883 -1.3091 2.5508 22 6 3.4392 -0.5980 3.7304 23 6 4.2947 -0.9310 4.7820 24 6 4.2472 -0.1634 6.0457 25 8 4.9919 -0.4529 6.9604 26 8 3.3782 0.8565 6.1818 27 6 5.1954 -1.9883 4.6409 28 6 5.2401 -2.7026 3.4632 29 1 -0.4850 0.8402 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8751 -0.6805 -0.8889 32 1 3.2093 -3.0069 -1.8932 33 1 3.8822 -4.4040 -1.0195 34 1 6.3079 -4.8023 -0.9733 35 1 8.4545 -4.4066 -2.1629 36 1 8.6215 -2.5338 -3.7537 37 1 4.6744 -1.4545 -3.0599 38 1 2.8296 -1.0486 1.7356 39 1 2.7423 0.2198 3.8394 40 1 3.3836 1.3283 7.0259 41 1 5.8576 -2.2458 5.4542 42 1 5.9371 -3.5203 3.3538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319646446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = -30.414166 kcal Electronic energy + Delta-G solvation = -29046.128132 eV Core-core repulsion = 24957.489747 eV Total energy + Delta-G solvation = -4088.638385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60717 -40.17543 -39.55585 -37.75092 -36.12650 -35.77118 -33.45109 -32.43082 -31.78341 -31.10555 -30.64141 -28.46225 -26.67336 -24.79914 -23.47419 -22.74685 -22.69336 -21.91279 -21.16373 -19.27431 -18.11878 -17.40267 -17.32671 -16.97055 -16.80369 -16.05913 -15.96036 -15.63611 -15.35087 -14.60410 -14.56872 -14.43371 -14.39671 -13.76679 -13.62952 -13.47053 -13.20449 -13.19002 -12.85629 -12.70676 -12.39269 -12.23290 -11.92642 -11.72528 -11.59120 -11.36143 -11.23494 -11.00593 -10.69603 -10.48439 -10.11904 -9.90848 -9.73807 -9.44773 -9.35517 -9.03385 -8.90798 -8.87647 -8.58760 -8.06254 -6.48805 -4.54158 0.54962 1.18464 1.41900 1.56712 2.39146 2.98427 3.03402 3.11495 3.15328 3.26336 3.50237 4.03753 4.04727 4.06017 4.56336 4.77577 4.83677 4.95536 5.01346 5.05178 5.13083 5.14857 5.18742 5.22822 5.52351 5.53622 5.61805 5.76996 5.91810 5.98279 6.07372 6.15481 6.22683 6.25283 6.37138 6.39064 6.45986 6.49531 6.57692 6.68971 6.82516 6.97238 7.06641 7.18024 7.79333 7.84641 8.07767 8.13056 8.54357 8.62525 9.06534 10.61509 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.004403 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.513443 B = 6357.657551 C = 8225.189153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.086 3.914 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.177 3.823 10 N -0.574 5.574 11 C 0.161 3.839 12 C -0.148 4.148 13 C -0.055 4.055 14 C -0.181 4.181 15 C 0.091 3.909 16 N -0.490 5.490 17 C 0.112 3.888 18 C 0.557 3.443 19 O -0.557 6.557 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.077 4.077 23 C -0.117 4.117 24 C 0.529 3.471 25 O -0.520 6.520 26 O -0.508 6.508 27 C -0.079 4.079 28 C -0.081 4.081 29 H 0.272 0.728 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.214 0.786 39 H 0.140 0.860 40 H 0.412 0.588 41 H 0.137 0.863 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 -1.509 2.335 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.121 4.121 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.590 4.590 8 H 0.105 0.895 9 C 0.056 3.944 10 N -0.303 5.303 11 C 0.038 3.962 12 C -0.151 4.151 13 C -0.081 4.081 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.198 5.198 17 C -0.045 4.045 18 C 0.346 3.654 19 O -0.438 6.438 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.095 4.095 23 C -0.118 4.118 24 C 0.375 3.625 25 O -0.410 6.410 26 O -0.319 6.319 27 C -0.097 4.097 28 C -0.100 4.100 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.229 0.771 39 H 0.158 0.842 40 H 0.270 0.730 41 H 0.155 0.845 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.750 -1.558 1.574 9.999 hybrid contribution 0.256 0.657 1.244 1.430 sum 10.006 -0.901 2.818 10.435 Atomic orbital electron populations 1.69868 1.06229 1.27881 1.46547 1.24908 0.94786 0.98906 0.93545 0.87114 0.80856 0.83996 0.79784 1.19255 1.20191 1.18233 1.21265 0.88654 0.95573 1.53495 0.89498 1.20790 0.95900 0.78481 0.99213 1.47778 1.60676 1.15501 1.06297 1.20219 0.92971 0.97680 0.85362 1.21414 0.98064 0.97012 0.98587 1.21695 0.91915 0.98199 0.96311 1.22124 0.98775 1.00068 0.99073 1.22715 0.97096 0.91327 0.95485 1.67711 1.00050 1.27608 1.24453 1.22822 0.95019 0.94867 0.91766 1.18296 0.77509 0.85934 0.83620 1.90667 1.48167 1.18441 1.86533 1.20259 0.98013 0.97009 0.94650 1.23945 0.97918 0.91892 1.00194 1.21579 0.96761 0.99469 0.91667 1.19250 1.01596 0.98641 0.92324 1.21081 0.76354 0.77591 0.87517 1.90851 1.41033 1.67319 1.41827 1.84608 1.58278 1.44850 1.44189 1.21039 0.97292 0.93621 0.97775 1.21128 0.98364 0.98943 0.91540 0.91742 0.92037 0.95258 0.88162 0.89309 0.84296 0.85158 0.83225 0.82479 0.77053 0.84183 0.73000 0.84503 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.71 13.96 55.43 0.77 -21.93 16 2 C 0.09 2.05 5.33 -17.82 -0.09 1.96 16 3 Si 0.86 17.83 27.34 -169.99 -4.65 13.18 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 7 C -0.55 -12.72 7.85 -34.44 -0.27 -12.99 16 8 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.18 3.51 3.70 -5.19 -0.02 3.49 16 10 N -0.57 -10.66 2.46 -177.48 -0.44 -11.10 16 11 C 0.16 2.63 5.52 -5.19 -0.03 2.60 16 12 C -0.15 -2.24 5.48 -104.48 -0.57 -2.82 16 13 C -0.05 -0.77 9.86 -39.28 -0.39 -1.16 16 14 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16 15 C 0.09 1.16 11.18 -17.54 -0.20 0.96 16 16 N -0.49 -7.46 10.36 -13.25 -0.14 -7.60 16 17 C 0.11 1.72 10.86 -17.55 -0.19 1.53 16 18 C 0.56 10.64 7.53 -12.24 -0.09 10.54 16 19 O -0.56 -11.09 15.73 5.34 0.08 -11.01 16 20 C -0.10 -1.73 5.62 -104.89 -0.59 -2.32 16 21 C -0.12 -2.26 7.50 -39.24 -0.29 -2.55 16 22 C -0.08 -1.26 9.60 -39.23 -0.38 -1.64 16 23 C -0.12 -1.80 5.88 -104.91 -0.62 -2.41 16 24 C 0.53 7.55 8.28 34.70 0.29 7.84 16 25 O -0.52 -8.32 17.12 -19.23 -0.33 -8.65 16 26 O -0.51 -5.78 12.67 -40.44 -0.51 -6.29 16 27 C -0.08 -1.17 9.58 -39.22 -0.38 -1.54 16 28 C -0.08 -1.27 9.57 -39.25 -0.38 -1.65 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.06 1.24 3.26 -51.95 -0.17 1.07 16 31 H 0.03 0.57 7.57 -51.93 -0.39 0.18 16 32 H 0.10 1.59 7.99 -51.93 -0.41 1.18 16 33 H 0.09 1.43 7.39 -51.93 -0.38 1.04 16 34 H 0.14 1.96 7.62 -52.49 -0.40 1.56 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.16 2.29 8.06 -52.48 -0.42 1.86 16 38 H 0.21 4.33 2.45 -52.49 -0.13 4.20 16 39 H 0.14 2.15 7.60 -52.49 -0.40 1.75 16 40 H 0.41 2.57 9.11 45.56 0.42 2.98 16 41 H 0.14 1.79 7.64 -52.49 -0.40 1.39 16 42 H 0.14 1.98 7.82 -52.49 -0.41 1.57 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -29.30 362.82 -7.87 -37.17 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -3.54 Total: 13.50 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.59 Total: -2.75 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.20 Total: -40.63 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.76 Total: -25.94 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.65 Total: 13.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.30 -7.87 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319646446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.760 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds