Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00460 * 2 1 4 4 H 1.48509 * 109.46794 * 269.99969 * 3 2 1 5 5 H 1.48506 * 109.46804 * 29.99387 * 3 2 1 6 6 H 1.48491 * 109.47396 * 149.99686 * 3 2 1 7 7 C 1.37883 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99766 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00154 * 79.04604 * 10 9 7 12 12 C 1.50697 * 109.47064 * 89.99758 * 11 10 9 13 13 C 1.38674 * 120.41842 * 89.99853 * 12 11 10 14 14 C 1.38623 * 118.42265 * 179.97438 * 13 12 11 15 15 C 1.38228 * 119.16454 * 0.25309 * 14 13 12 16 16 N 1.31859 * 120.75893 * 359.50207 * 15 14 13 17 17 C 1.31883 * 121.72301 * 0.49070 * 16 15 14 18 18 C 1.34769 * 119.99866 * 259.04637 * 10 9 7 19 19 O 1.21529 * 120.00351 * 181.48796 * 18 10 9 20 20 C 1.48049 * 120.00467 * 1.48651 * 18 10 9 21 21 C 1.39555 * 119.98828 * 23.35821 * 20 18 10 22 22 C 1.37824 * 120.00256 * 179.72331 * 21 20 18 23 23 C 1.39595 * 119.99283 * 0.57568 * 22 21 20 24 24 C 1.47927 * 120.00584 * 179.67695 * 23 22 21 25 25 O 1.21448 * 119.99850 * 180.02562 * 24 23 22 26 26 O 1.34682 * 119.99990 * 0.02562 * 24 23 22 27 27 C 1.39608 * 119.99129 * 359.69741 * 23 22 21 28 28 C 1.37817 * 119.99130 * 0.02562 * 27 23 22 29 29 H 0.97009 * 119.99644 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47368 * 59.99816 * 9 7 2 31 31 H 1.09003 * 109.47060 * 299.99836 * 9 7 2 32 32 H 1.08997 * 109.47030 * 330.00237 * 11 10 9 33 33 H 1.08994 * 109.47332 * 209.99896 * 11 10 9 34 34 H 1.07998 * 120.78570 * 359.96302 * 13 12 11 35 35 H 1.08003 * 120.41831 * 179.97438 * 14 13 12 36 36 H 1.07995 * 119.62080 * 179.74467 * 15 14 13 37 37 H 1.08009 * 119.61414 * 179.75163 * 17 16 15 38 38 H 1.07995 * 120.00320 * 0.02562 * 21 20 18 39 39 H 1.07997 * 120.00134 * 180.27797 * 22 21 20 40 40 H 0.96701 * 117.00506 * 179.97438 * 26 24 23 41 41 H 1.07999 * 120.00455 * 179.97438 * 27 23 22 42 42 H 1.07998 * 119.99485 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.0171 -3.3462 -1.2448 12 6 5.3383 -3.1454 -1.9413 13 6 6.4059 -3.9905 -1.6788 14 6 7.6021 -3.7684 -2.3432 15 6 7.6919 -2.7161 -3.2351 16 7 6.6543 -1.9353 -3.4635 17 6 5.5011 -2.1172 -2.8499 18 6 4.4330 -3.1371 1.1469 19 8 4.8633 -4.2736 1.1419 20 6 4.3848 -2.3695 2.4120 21 6 3.4883 -1.3091 2.5508 22 6 3.4392 -0.5980 3.7304 23 6 4.2947 -0.9310 4.7820 24 6 4.2472 -0.1634 6.0457 25 8 4.9919 -0.4529 6.9604 26 8 3.3782 0.8565 6.1818 27 6 5.1954 -1.9883 4.6409 28 6 5.2401 -2.7026 3.4632 29 1 -0.4850 0.8402 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8751 -0.6805 -0.8889 32 1 3.2093 -3.0069 -1.8932 33 1 3.8822 -4.4040 -1.0195 34 1 6.3079 -4.8023 -0.9733 35 1 8.4545 -4.4066 -2.1629 36 1 8.6215 -2.5338 -3.7537 37 1 4.6744 -1.4545 -3.0599 38 1 2.8296 -1.0486 1.7356 39 1 2.7423 0.2198 3.8394 40 1 3.3836 1.3283 7.0259 41 1 5.8576 -2.2458 5.4542 42 1 5.9371 -3.5203 3.3538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319646446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -47.605789 kcal Electronic energy + Delta-G solvation = -29046.873617 eV Core-core repulsion = 24957.489747 eV Total energy + Delta-G solvation = -4089.383870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89812 -41.30574 -40.75226 -39.05071 -37.32143 -37.13549 -34.98082 -33.90678 -32.91602 -32.36495 -31.88772 -30.11189 -27.95201 -26.05801 -24.73590 -24.25249 -23.91313 -23.10864 -22.36858 -20.68069 -19.20145 -19.15529 -18.50024 -18.31914 -17.98290 -17.46031 -17.09855 -16.74070 -16.65569 -16.17757 -15.86687 -15.77320 -15.67447 -15.15916 -14.85397 -14.68735 -14.59342 -14.35919 -14.23828 -13.94301 -13.68670 -13.54069 -13.28246 -13.12800 -12.81892 -12.63541 -12.60800 -12.55563 -12.03723 -11.86198 -11.75209 -11.54721 -11.03513 -10.85904 -10.69732 -10.47196 -10.19341 -10.01464 -9.92549 -9.56275 -8.35442 -6.43616 -0.72067 0.10614 0.29237 0.33035 1.16366 1.38026 1.43215 1.48748 1.90138 1.97505 2.13112 2.29296 2.73561 2.92660 2.96984 3.45427 3.53586 3.77434 3.86336 3.90952 3.92791 4.06121 4.09902 4.11307 4.26540 4.36494 4.44784 4.58311 4.66417 4.72392 4.75056 4.82517 4.88537 4.99540 5.15374 5.19834 5.21818 5.29197 5.35043 5.37784 5.50372 5.54861 5.75334 5.77310 6.08469 6.47528 6.65977 6.91816 7.00457 7.07284 7.22085 8.78752 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.004403 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.513443 B = 6357.657551 C = 8225.189153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.042 3.958 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.540 4.540 8 H 0.046 0.954 9 C 0.187 3.813 10 N -0.577 5.577 11 C 0.162 3.838 12 C -0.157 4.157 13 C -0.064 4.064 14 C -0.169 4.169 15 C 0.091 3.909 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.552 3.448 19 O -0.570 6.570 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.077 4.077 23 C -0.117 4.117 24 C 0.538 3.462 25 O -0.537 6.537 26 O -0.502 6.502 27 C -0.068 4.068 28 C -0.075 4.075 29 H 0.273 0.727 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.192 0.808 39 H 0.148 0.852 40 H 0.435 0.565 41 H 0.159 0.841 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 -0.848 3.299 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.160 4.160 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.578 4.578 8 H 0.064 0.936 9 C 0.065 3.935 10 N -0.305 5.305 11 C 0.039 3.961 12 C -0.160 4.160 13 C -0.090 4.090 14 C -0.188 4.188 15 C -0.066 4.066 16 N -0.219 5.219 17 C -0.057 4.057 18 C 0.342 3.658 19 O -0.452 6.452 20 C -0.116 4.116 21 C -0.158 4.158 22 C -0.095 4.095 23 C -0.118 4.118 24 C 0.384 3.616 25 O -0.429 6.429 26 O -0.316 6.316 27 C -0.086 4.086 28 C -0.094 4.094 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.183 0.817 36 H 0.202 0.798 37 H 0.172 0.828 38 H 0.208 0.792 39 H 0.166 0.834 40 H 0.298 0.702 41 H 0.177 0.823 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.574 -0.889 2.544 12.860 hybrid contribution -0.600 0.361 0.996 1.218 sum 11.974 -0.528 3.540 12.497 Atomic orbital electron populations 1.69996 1.08029 1.28714 1.49049 1.25560 0.95214 1.02062 0.93196 0.86248 0.80484 0.79920 0.79985 1.19028 1.20163 1.16071 1.21251 0.90274 0.93878 1.52376 0.93589 1.20597 0.93599 0.79543 0.99723 1.47813 1.60423 1.15172 1.07098 1.20227 0.94023 0.97154 0.84686 1.21224 0.97685 0.97921 0.99155 1.21791 0.92517 0.97994 0.96710 1.22468 0.98855 0.99906 0.97613 1.23340 0.97522 0.90605 0.95167 1.67734 1.00503 1.28691 1.24940 1.22797 0.95466 0.95130 0.92288 1.18567 0.77256 0.85951 0.84074 1.90642 1.48942 1.18860 1.86791 1.20293 0.99140 0.97320 0.94889 1.23621 0.98461 0.93106 1.00571 1.21608 0.97141 0.99453 0.91298 1.19424 1.01010 0.98771 0.92606 1.20760 0.76367 0.77842 0.86650 1.90855 1.41886 1.68008 1.42189 1.84557 1.57021 1.43999 1.46048 1.21283 0.96853 0.92684 0.97740 1.21276 0.97853 0.99170 0.91099 0.91758 0.91177 0.94566 0.88707 0.89577 0.84581 0.81692 0.79774 0.82812 0.79246 0.83384 0.70217 0.82331 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.96 21.45 0.30 -49.56 16 2 C 0.04 2.08 5.33 84.66 0.45 2.53 16 3 Si 0.91 36.64 27.34 68.60 1.88 38.51 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.24 -8.69 6.54 99.48 0.65 -8.03 16 7 C -0.54 -25.87 7.85 25.60 0.20 -25.66 16 8 H 0.05 2.54 8.06 -2.91 -0.02 2.51 16 9 C 0.19 7.51 3.70 85.63 0.32 7.83 16 10 N -0.58 -21.91 2.46 -833.70 -2.05 -23.96 16 11 C 0.16 5.47 5.52 85.63 0.47 5.94 16 12 C -0.16 -4.76 5.48 -19.77 -0.11 -4.87 16 13 C -0.06 -1.72 9.86 22.47 0.22 -1.50 16 14 C -0.17 -3.65 10.11 22.36 0.23 -3.42 16 15 C 0.09 2.06 11.18 84.69 0.95 3.01 16 16 N -0.51 -14.82 10.36 -195.84 -2.03 -16.85 16 17 C 0.10 3.04 10.86 84.67 0.92 3.96 16 18 C 0.55 21.21 7.53 86.85 0.65 21.86 16 19 O -0.57 -22.73 15.73 -3.81 -0.06 -22.79 16 20 C -0.11 -4.03 5.62 -20.04 -0.11 -4.14 16 21 C -0.14 -5.13 7.50 22.49 0.17 -4.96 16 22 C -0.08 -2.43 9.60 22.50 0.22 -2.21 16 23 C -0.12 -3.33 5.88 -20.05 -0.12 -3.45 16 24 C 0.54 13.90 8.28 70.39 0.58 14.48 16 25 O -0.54 -15.69 17.12 20.00 0.34 -15.35 16 26 O -0.50 -9.94 12.67 -55.91 -0.71 -10.65 16 27 C -0.07 -1.82 9.58 22.50 0.22 -1.61 16 28 C -0.08 -2.24 9.57 22.49 0.22 -2.02 16 29 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.07 2.79 3.26 -2.41 -0.01 2.78 16 31 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 32 H 0.09 3.22 7.99 -2.39 -0.02 3.20 16 33 H 0.09 2.90 7.39 -2.39 -0.02 2.88 16 34 H 0.14 3.74 7.62 -2.91 -0.02 3.72 16 35 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.19 7.88 2.45 -2.91 -0.01 7.88 16 39 H 0.15 4.35 7.60 -2.91 -0.02 4.33 16 40 H 0.44 4.00 9.11 -74.06 -0.67 3.32 16 41 H 0.16 3.62 7.64 -2.91 -0.02 3.60 16 42 H 0.15 4.04 7.82 -2.91 -0.02 4.01 16 Total: -1.00 -64.19 362.82 3.51 -60.68 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.37 Total: 34.21 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.47 Total: 5.75 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -3.78 Total: -90.37 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.43 Total: -48.78 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 1.88 Total: 38.51 kcal Total: -64.19 3.51 -60.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319646446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.075 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds