Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48505 * 109.46964 * 274.98673 * 3 2 1 5 5 H 1.48501 * 109.47148 * 34.98310 * 3 2 1 6 6 H 1.48499 * 109.47458 * 154.98492 * 3 2 1 7 7 C 1.40230 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00506 * 198.06779 * 7 2 1 9 9 C 1.41091 * 119.99936 * 18.06240 * 7 2 1 10 10 C 1.40895 * 120.10237 * 205.16569 * 9 7 2 11 11 C 1.36307 * 119.89203 * 180.02562 * 10 9 7 12 12 C 1.40038 * 120.10561 * 359.97438 * 11 10 9 13 13 C 1.47586 * 119.89443 * 179.97438 * 12 11 10 14 14 O 1.21604 * 120.00435 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99894 * 180.02562 * 13 12 11 16 16 C 1.39981 * 119.99896 * 184.84546 * 15 13 12 17 17 C 1.38884 * 120.02046 * 324.43629 * 16 15 13 18 18 C 1.38074 * 119.98448 * 179.79307 * 17 16 15 19 19 C 1.38733 * 120.01657 * 0.48950 * 18 17 16 20 20 O 1.35966 * 119.98304 * 179.72548 * 19 18 17 21 21 C 1.42891 * 117.00003 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.47396 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00201 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99885 * 0.02562 * 22 21 20 25 25 C 1.38735 * 120.03606 * 359.74185 * 19 18 17 26 26 C 1.38078 * 120.01805 * 0.02630 * 25 19 18 27 27 C 1.40037 * 120.20357 * 0.27176 * 12 11 10 28 28 C 1.36299 * 120.10495 * 359.44798 * 27 12 11 29 29 H 0.96996 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05612 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.94211 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99549 * 5.11625 * 15 13 12 33 33 H 1.08000 * 120.00586 * 0.02562 * 17 16 15 34 34 H 1.07996 * 119.99444 * 180.20875 * 18 17 16 35 35 H 1.09005 * 109.47421 * 300.00508 * 21 20 19 36 36 H 1.08997 * 109.47168 * 60.00058 * 21 20 19 37 37 H 0.97000 * 119.99819 * 359.97438 * 23 22 21 38 38 H 0.97008 * 120.00070 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.99369 * 180.02562 * 25 19 18 40 40 H 1.08004 * 120.00905 * 179.97438 * 26 25 19 41 41 H 1.08007 * 119.94401 * 179.70089 * 27 12 11 42 42 H 1.08008 * 120.04923 * 180.24886 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4945 2.6200 0.8027 6 1 3.5867 1.4121 0.5920 7 6 2.0076 -1.2144 -0.0005 8 1 3.0477 -1.2376 0.2895 9 6 1.3544 -2.4060 -0.3799 10 6 1.8199 -3.6487 0.0936 11 6 1.1859 -4.7973 -0.2761 12 6 0.0732 -4.7435 -1.1246 13 6 -0.6094 -5.9901 -1.5224 14 8 -0.2058 -7.0617 -1.1130 15 7 -1.6803 -5.9409 -2.3394 16 6 -2.3891 -7.1111 -2.6354 17 6 -1.7140 -8.3175 -2.7685 18 6 -2.4144 -9.4721 -3.0563 19 6 -3.7910 -9.4255 -3.2227 20 8 -4.4793 -10.5619 -3.5116 21 6 -3.7212 -11.7675 -3.6287 22 6 -4.6460 -12.9132 -3.9501 23 7 -4.1495 -14.1564 -4.1067 24 8 -5.8369 -12.7165 -4.0677 25 6 -4.4655 -8.2200 -3.0947 26 6 -3.7671 -7.0653 -2.8022 27 6 -0.3900 -3.5112 -1.6019 28 6 0.2341 -2.3569 -1.2330 29 1 -0.4850 0.8400 0.0004 30 1 2.6777 -3.6911 0.7484 31 1 1.5423 -5.7503 0.0861 32 1 -1.9573 -5.0952 -2.7253 33 1 -0.6419 -8.3532 -2.6431 34 1 -1.8901 -10.4109 -3.1565 35 1 -2.9869 -11.6589 -4.4269 36 1 -3.2083 -11.9670 -2.6879 37 1 -3.1969 -14.3135 -4.0130 38 1 -4.7448 -14.8939 -4.3132 39 1 -5.5372 -8.1846 -3.2239 40 1 -4.2924 -6.1268 -2.7030 41 1 -1.2456 -3.4750 -2.2600 42 1 -0.1263 -1.4066 -1.5985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340039884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -65.613989 kcal Electronic energy + Delta-G solvation = -26890.860917 eV Core-core repulsion = 22800.696152 eV Total energy + Delta-G solvation = -4090.164764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62980 -39.89125 -39.00203 -37.60011 -36.74018 -34.18454 -34.03653 -33.91091 -31.10463 -30.52431 -29.55984 -29.35046 -27.86247 -25.87006 -23.25260 -22.80524 -21.59603 -21.12984 -20.85835 -19.68334 -18.54231 -18.16007 -17.63521 -17.38508 -16.77163 -16.62126 -16.47347 -15.62555 -15.48151 -14.63705 -14.52236 -14.30266 -14.25491 -14.08379 -13.93536 -13.43992 -13.16208 -13.10711 -12.84843 -12.65962 -12.43226 -12.15981 -12.00957 -11.49489 -11.43826 -11.35500 -11.02895 -11.01090 -10.73141 -10.35802 -10.20946 -10.11578 -9.66773 -9.64078 -9.44536 -9.14151 -8.88979 -7.84014 -7.71960 -7.50679 -7.12510 -4.69237 1.32631 1.44896 2.12363 2.14147 2.40492 2.85825 2.90916 2.94054 2.95541 3.49907 3.61876 3.62434 3.68401 3.93081 4.31742 4.46964 4.58995 4.66163 4.84124 4.93443 5.30586 5.39403 5.46862 5.55567 5.79775 5.91420 5.99084 6.09992 6.21971 6.25471 6.39077 6.50615 6.55555 6.68671 6.74202 6.74620 6.90742 7.02459 7.05629 7.33504 7.35634 7.54451 7.67467 7.75742 7.77051 7.97438 8.03408 8.30670 8.53759 8.65579 8.86312 9.79537 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.001707 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.529340 B =16397.673686 C =16986.215452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.439 4.439 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.018 4.018 12 C -0.289 4.289 13 C 0.572 3.428 14 O -0.559 6.559 15 N -0.682 5.682 16 C 0.131 3.869 17 C -0.084 4.084 18 C -0.190 4.190 19 C 0.097 3.903 20 O -0.294 6.294 21 C 0.040 3.960 22 C 0.520 3.480 23 N -0.852 5.852 24 O -0.519 6.519 25 C -0.126 4.126 26 C -0.114 4.114 27 C -0.062 4.062 28 C -0.176 4.176 29 H 0.288 0.712 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.408 0.592 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.404 0.596 38 H 0.408 0.592 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 -15.584 -7.958 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.037 4.037 12 C -0.293 4.293 13 C 0.369 3.631 14 O -0.440 6.440 15 N -0.327 5.327 16 C 0.036 3.964 17 C -0.105 4.105 18 C -0.209 4.209 19 C 0.051 3.949 20 O -0.207 6.207 21 C -0.039 4.039 22 C 0.304 3.696 23 N -0.419 5.419 24 O -0.393 6.393 25 C -0.145 4.145 26 C -0.134 4.134 27 C -0.081 4.081 28 C -0.196 4.196 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.245 0.755 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.232 0.768 38 H 0.239 0.761 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.107 0.893 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.646 -15.792 -7.673 18.443 hybrid contribution 0.605 0.733 -0.102 0.956 sum -5.041 -15.059 -7.776 17.682 Atomic orbital electron populations 1.69735 1.07965 1.30255 1.31099 1.26126 0.94831 1.02002 0.91852 0.86173 0.80712 0.79764 0.79537 1.18928 1.19906 1.18160 1.19907 0.98572 0.91203 1.36912 0.89529 1.17814 0.90257 0.92234 0.87128 1.20717 1.04821 0.92600 1.07637 1.20356 0.92707 0.97236 0.93448 1.18764 1.05129 0.90612 1.14809 1.18723 0.78263 0.90015 0.76109 1.90621 1.65406 1.31384 1.56630 1.43576 1.30987 1.09032 1.49133 1.17785 0.90598 0.87763 1.00233 1.21179 1.01442 0.90780 0.97057 1.21085 0.92645 0.99514 1.07647 1.18915 0.90547 0.86020 0.99373 1.86118 1.34698 1.13560 1.86290 1.22381 0.93905 0.84115 1.03526 1.20137 0.88915 0.84047 0.76534 1.43665 1.13151 1.09393 1.75659 1.90808 1.16117 1.83892 1.48518 1.20126 1.00246 0.89310 1.04826 1.20780 0.91976 0.98468 1.02200 1.20469 0.97353 0.92576 0.97713 1.20953 1.00002 0.96877 1.01736 0.90074 0.88256 0.88001 0.75489 0.83781 0.85586 0.88878 0.88818 0.76799 0.76053 0.84924 0.84936 0.89259 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.84 11.00 55.56 0.61 -17.23 16 2 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 3 Si 0.91 16.72 29.60 -169.99 -5.03 11.68 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 7 C -0.44 -10.55 9.04 -37.75 -0.34 -10.89 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.17 5.57 -106.80 -0.59 2.58 16 10 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 11 C -0.02 -0.41 9.52 -39.60 -0.38 -0.79 16 12 C -0.29 -6.31 5.89 -104.74 -0.62 -6.92 16 13 C 0.57 11.63 7.61 -12.45 -0.09 11.53 16 14 O -0.56 -12.44 13.78 5.27 0.07 -12.37 16 15 N -0.68 -11.32 5.28 -10.76 -0.06 -11.38 16 16 C 0.13 2.04 6.29 -83.66 -0.53 1.51 16 17 C -0.08 -1.29 8.69 -39.40 -0.34 -1.63 16 18 C -0.19 -2.38 9.03 -39.46 -0.36 -2.74 16 19 C 0.10 1.25 6.69 -39.21 -0.26 0.99 16 20 O -0.29 -3.71 9.67 -39.54 -0.38 -4.09 16 21 C 0.04 0.33 5.22 36.00 0.19 0.51 16 22 C 0.52 4.67 8.18 -10.99 -0.09 4.58 16 23 N -0.85 -3.48 8.87 31.22 0.28 -3.21 16 24 O -0.52 -7.40 17.34 -14.35 -0.25 -7.65 16 25 C -0.13 -1.61 9.98 -39.46 -0.39 -2.01 16 26 C -0.11 -1.50 9.96 -39.40 -0.39 -1.89 16 27 C -0.06 -1.31 9.47 -39.61 -0.37 -1.69 16 28 C -0.18 -4.16 8.63 -39.27 -0.34 -4.50 16 29 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.10 2.21 7.63 -52.48 -0.40 1.81 16 32 H 0.41 5.85 6.84 -40.82 -0.28 5.57 16 33 H 0.14 2.42 6.24 -52.49 -0.33 2.10 16 34 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 35 H 0.09 0.53 7.66 -51.93 -0.40 0.13 16 36 H 0.09 0.57 7.66 -51.93 -0.40 0.18 16 37 H 0.40 0.31 8.83 -40.82 -0.36 -0.05 16 38 H 0.41 1.33 8.93 -40.82 -0.36 0.96 16 39 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 40 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.09 1.58 6.38 -52.48 -0.34 1.24 16 42 H 0.12 2.86 6.20 -52.48 -0.33 2.53 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -32.24 364.51 -8.99 -41.23 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.34 Total: 13.22 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -5.39 Total: -15.71 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.83 Total: -31.81 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.56 Total: -24.11 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.24 -8.99 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.386 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds