Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48505 * 109.46964 * 274.98673 * 3 2 1 5 5 H 1.48501 * 109.47148 * 34.98310 * 3 2 1 6 6 H 1.48499 * 109.47458 * 154.98492 * 3 2 1 7 7 C 1.40230 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00506 * 198.06779 * 7 2 1 9 9 C 1.41091 * 119.99936 * 18.06240 * 7 2 1 10 10 C 1.40895 * 120.10237 * 205.16569 * 9 7 2 11 11 C 1.36307 * 119.89203 * 180.02562 * 10 9 7 12 12 C 1.40038 * 120.10561 * 359.97438 * 11 10 9 13 13 C 1.47586 * 119.89443 * 179.97438 * 12 11 10 14 14 O 1.21604 * 120.00435 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99894 * 180.02562 * 13 12 11 16 16 C 1.39981 * 119.99896 * 184.84546 * 15 13 12 17 17 C 1.38884 * 120.02046 * 324.43629 * 16 15 13 18 18 C 1.38074 * 119.98448 * 179.79307 * 17 16 15 19 19 C 1.38733 * 120.01657 * 0.48950 * 18 17 16 20 20 O 1.35966 * 119.98304 * 179.72548 * 19 18 17 21 21 C 1.42891 * 117.00003 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.47396 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00201 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99885 * 0.02562 * 22 21 20 25 25 C 1.38735 * 120.03606 * 359.74185 * 19 18 17 26 26 C 1.38078 * 120.01805 * 0.02630 * 25 19 18 27 27 C 1.40037 * 120.20357 * 0.27176 * 12 11 10 28 28 C 1.36299 * 120.10495 * 359.44798 * 27 12 11 29 29 H 0.96996 * 120.00236 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.05612 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.94211 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99549 * 5.11625 * 15 13 12 33 33 H 1.08000 * 120.00586 * 0.02562 * 17 16 15 34 34 H 1.07996 * 119.99444 * 180.20875 * 18 17 16 35 35 H 1.09005 * 109.47421 * 300.00508 * 21 20 19 36 36 H 1.08997 * 109.47168 * 60.00058 * 21 20 19 37 37 H 0.97000 * 119.99819 * 359.97438 * 23 22 21 38 38 H 0.97008 * 120.00070 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.99369 * 180.02562 * 25 19 18 40 40 H 1.08004 * 120.00905 * 179.97438 * 26 25 19 41 41 H 1.08007 * 119.94401 * 179.70089 * 27 12 11 42 42 H 1.08008 * 120.04923 * 180.24886 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4945 2.6200 0.8027 6 1 3.5867 1.4121 0.5920 7 6 2.0076 -1.2144 -0.0005 8 1 3.0477 -1.2376 0.2895 9 6 1.3544 -2.4060 -0.3799 10 6 1.8199 -3.6487 0.0936 11 6 1.1859 -4.7973 -0.2761 12 6 0.0732 -4.7435 -1.1246 13 6 -0.6094 -5.9901 -1.5224 14 8 -0.2058 -7.0617 -1.1130 15 7 -1.6803 -5.9409 -2.3394 16 6 -2.3891 -7.1111 -2.6354 17 6 -1.7140 -8.3175 -2.7685 18 6 -2.4144 -9.4721 -3.0563 19 6 -3.7910 -9.4255 -3.2227 20 8 -4.4793 -10.5619 -3.5116 21 6 -3.7212 -11.7675 -3.6287 22 6 -4.6460 -12.9132 -3.9501 23 7 -4.1495 -14.1564 -4.1067 24 8 -5.8369 -12.7165 -4.0677 25 6 -4.4655 -8.2200 -3.0947 26 6 -3.7671 -7.0653 -2.8022 27 6 -0.3900 -3.5112 -1.6019 28 6 0.2341 -2.3569 -1.2330 29 1 -0.4850 0.8400 0.0004 30 1 2.6777 -3.6911 0.7484 31 1 1.5423 -5.7503 0.0861 32 1 -1.9573 -5.0952 -2.7253 33 1 -0.6419 -8.3532 -2.6431 34 1 -1.8901 -10.4109 -3.1565 35 1 -2.9869 -11.6589 -4.4269 36 1 -3.2083 -11.9670 -2.6879 37 1 -3.1969 -14.3135 -4.0130 38 1 -4.7448 -14.8939 -4.3132 39 1 -5.5372 -8.1846 -3.2239 40 1 -4.2924 -6.1268 -2.7030 41 1 -1.2456 -3.4750 -2.2600 42 1 -0.1263 -1.4066 -1.5985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340039884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -86.853087 kcal Electronic energy + Delta-G solvation = -26891.781913 eV Core-core repulsion = 22800.696152 eV Total energy + Delta-G solvation = -4091.085760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68596 -41.00496 -40.05347 -39.10699 -38.02856 -35.70071 -35.31519 -34.78795 -32.26261 -32.02035 -31.31941 -30.33883 -28.89846 -27.48880 -24.49491 -23.98898 -23.02919 -22.64704 -21.72006 -21.18935 -19.45912 -19.36518 -19.07203 -18.40453 -17.96420 -17.37809 -17.34312 -17.18524 -16.59410 -16.04218 -15.75970 -15.59087 -15.40048 -15.33705 -15.10264 -14.90316 -14.53426 -14.27409 -14.10017 -13.89141 -13.74735 -13.60125 -13.35992 -13.21299 -12.86647 -12.65783 -12.38838 -12.35607 -11.99520 -11.75588 -11.37613 -11.14225 -11.13320 -10.92531 -10.75239 -10.63031 -9.98119 -9.59833 -9.46872 -8.81642 -8.69500 -6.49569 0.18620 0.35730 0.55725 1.15104 1.39264 1.43333 1.47150 1.54280 1.71779 2.06983 2.16720 2.25653 2.69895 2.85561 2.87680 3.67598 3.75138 3.89839 3.94521 4.10093 4.12454 4.19400 4.27516 4.31087 4.43834 4.46089 4.59401 4.88707 4.92832 5.01946 5.06319 5.13823 5.27572 5.33107 5.40187 5.48820 5.58138 5.77283 5.80935 5.87222 5.94460 5.98462 6.21534 6.28488 6.45068 6.52614 6.60065 6.75747 6.87222 7.24691 7.33581 8.14219 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.001707 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.529340 B =16397.673686 C =16986.215452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.252 4.252 11 C -0.029 4.029 12 C -0.294 4.294 13 C 0.573 3.427 14 O -0.582 6.582 15 N -0.667 5.667 16 C 0.100 3.900 17 C -0.100 4.100 18 C -0.184 4.184 19 C 0.102 3.898 20 O -0.314 6.314 21 C 0.030 3.970 22 C 0.519 3.481 23 N -0.825 5.825 24 O -0.583 6.583 25 C -0.134 4.134 26 C -0.104 4.104 27 C -0.054 4.054 28 C -0.196 4.196 29 H 0.298 0.702 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.418 0.582 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.423 0.577 38 H 0.415 0.585 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 -16.328 -8.853 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.098 3.902 10 C -0.272 4.272 11 C -0.048 4.048 12 C -0.299 4.299 13 C 0.369 3.631 14 O -0.465 6.465 15 N -0.313 5.313 16 C 0.006 3.994 17 C -0.121 4.121 18 C -0.203 4.203 19 C 0.057 3.943 20 O -0.228 6.228 21 C -0.048 4.048 22 C 0.303 3.697 23 N -0.392 5.392 24 O -0.462 6.462 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.072 4.072 28 C -0.216 4.216 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.257 0.743 33 H 0.142 0.858 34 H 0.176 0.824 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.255 0.745 38 H 0.247 0.753 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.143 0.857 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.099 -16.600 -8.592 19.662 hybrid contribution 0.666 0.694 0.118 0.969 sum -5.434 -15.906 -8.475 18.824 Atomic orbital electron populations 1.69753 1.09242 1.31721 1.31200 1.26919 0.95529 1.04819 0.90816 0.85099 0.79195 0.75296 0.79709 1.18323 1.19005 1.18073 1.20151 0.98884 0.92243 1.38502 0.89568 1.18167 0.91171 0.92941 0.87907 1.20854 1.05394 0.92713 1.08195 1.20514 0.93237 0.97174 0.93882 1.19045 1.04877 0.91746 1.14217 1.18478 0.79075 0.88965 0.76583 1.90607 1.66353 1.31844 1.57731 1.43289 1.29822 1.10184 1.47992 1.18009 0.91547 0.87334 1.02535 1.21145 1.00760 0.91881 0.98269 1.21296 0.92591 0.99922 1.06452 1.19041 0.90650 0.86418 0.98237 1.86105 1.36063 1.14552 1.86057 1.22760 0.93918 0.82197 1.05937 1.20380 0.88129 0.85348 0.75829 1.43479 1.14445 1.08018 1.73271 1.90788 1.18579 1.84948 1.51860 1.20411 1.01123 0.89322 1.04405 1.20946 0.90964 0.99613 1.00891 1.20747 0.97750 0.91491 0.97258 1.20983 1.00627 0.97393 1.02566 0.89101 0.87706 0.87616 0.74310 0.85755 0.82385 0.85890 0.86316 0.74505 0.75270 0.83465 0.82837 0.85698 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.22 11.00 21.87 0.24 -36.98 16 2 C 0.04 1.75 5.13 85.35 0.44 2.19 16 3 Si 0.99 33.96 29.60 68.60 2.03 35.99 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.47 -23.21 9.04 23.45 0.21 -23.00 16 8 H 0.09 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 10 C -0.25 -12.13 9.73 22.47 0.22 -11.91 16 11 C -0.03 -1.34 9.52 22.26 0.21 -1.12 16 12 C -0.29 -12.89 5.89 -19.94 -0.12 -13.01 16 13 C 0.57 23.15 7.61 86.71 0.66 23.81 16 14 O -0.58 -26.00 13.78 -4.04 -0.06 -26.06 16 15 N -0.67 -21.44 5.28 -306.20 -1.62 -23.06 16 16 C 0.10 2.97 6.29 38.15 0.24 3.21 16 17 C -0.10 -2.96 8.69 22.39 0.19 -2.76 16 18 C -0.18 -4.19 9.03 22.35 0.20 -3.99 16 19 C 0.10 2.41 6.69 22.51 0.15 2.57 16 20 O -0.31 -7.27 9.67 -74.13 -0.72 -7.99 16 21 C 0.03 0.40 5.22 71.23 0.37 0.77 16 22 C 0.52 8.35 8.18 87.66 0.72 9.06 16 23 N -0.83 -4.59 8.87 -173.53 -1.54 -6.13 16 24 O -0.58 -16.36 17.34 16.01 0.28 -16.08 16 25 C -0.13 -3.14 9.98 22.35 0.22 -2.92 16 26 C -0.10 -2.53 9.96 22.39 0.22 -2.31 16 27 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 28 C -0.20 -9.40 8.63 22.47 0.19 -9.21 16 29 H 0.30 12.35 8.29 -92.71 -0.77 11.58 16 30 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.11 4.70 7.63 -2.91 -0.02 4.68 16 32 H 0.42 11.29 6.84 -92.71 -0.63 10.66 16 33 H 0.12 4.17 6.24 -2.91 -0.02 4.16 16 34 H 0.16 2.41 6.29 -2.91 -0.02 2.39 16 35 H 0.12 0.92 7.66 -2.38 -0.02 0.90 16 36 H 0.12 1.01 7.66 -2.39 -0.02 0.99 16 37 H 0.42 -0.81 8.83 -92.71 -0.82 -1.63 16 38 H 0.41 1.78 8.93 -92.70 -0.83 0.95 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 42 H 0.11 5.49 6.20 -2.91 -0.02 5.47 16 Total: -1.00 -72.53 364.51 1.70 -70.83 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -1.15 Total: 35.13 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 4.23 Total: -25.66 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -2.92 Total: -66.17 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.50 Total: -50.13 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Total: -72.53 1.70 -70.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.020 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds