Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 120.00365 * 2 1 4 4 H 1.48486 * 109.47241 * 240.00151 * 3 2 1 5 5 H 1.48506 * 109.46618 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47137 * 119.99494 * 3 2 1 7 7 C 1.38803 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99912 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00118 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00186 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47361 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.49781 * 304.99850 * 15 14 13 17 17 C 1.53122 * 109.50287 * 65.07538 * 15 14 13 18 18 C 1.53118 * 109.15655 * 177.59530 * 17 15 14 19 19 C 1.53028 * 109.28119 * 302.34747 * 18 17 15 20 20 N 1.46843 * 109.52604 * 59.17841 * 19 18 17 21 21 C 1.46901 * 111.00181 * 174.15596 * 20 19 18 22 22 C 1.52995 * 109.47527 * 283.20343 * 21 20 19 23 23 F 1.39905 * 109.46691 * 65.97335 * 22 21 20 24 24 F 1.39897 * 109.47567 * 185.97239 * 22 21 20 25 25 F 1.39898 * 109.47487 * 305.97552 * 22 21 20 26 26 C 1.46846 * 111.23628 * 298.28275 * 20 19 18 27 27 H 0.97006 * 119.99850 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47365 * 299.99762 * 10 9 7 29 29 H 1.09001 * 109.46799 * 60.00309 * 10 9 7 30 30 H 0.96998 * 119.99970 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.47311 * 300.00202 * 14 13 11 32 32 H 1.09004 * 109.46772 * 59.99955 * 14 13 11 33 33 H 1.08994 * 109.52321 * 297.50719 * 17 15 14 34 34 H 1.09008 * 109.51631 * 57.62890 * 17 15 14 35 35 H 1.08997 * 109.50254 * 62.29341 * 18 17 15 36 36 H 1.09000 * 109.49755 * 182.40553 * 18 17 15 37 37 H 1.08997 * 109.46550 * 179.20045 * 19 18 17 38 38 H 1.09003 * 109.46307 * 299.17667 * 19 18 17 39 39 H 1.08999 * 109.46825 * 43.20601 * 21 20 19 40 40 H 1.08998 * 109.46773 * 163.20128 * 21 20 19 41 41 H 1.08999 * 109.42521 * 301.68163 * 26 20 19 42 42 H 1.08998 * 109.49504 * 181.71257 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0018 14 6 2.3303 -7.7151 0.0019 15 6 3.5023 -8.6986 0.0033 16 1 4.1605 -8.4814 -0.8379 17 6 4.2837 -8.5608 1.3129 18 6 5.4179 -9.5893 1.3318 19 6 4.8299 -10.9929 1.1706 20 7 4.0930 -11.0738 -0.0969 21 6 3.6319 -12.4451 -0.3513 22 6 4.8069 -13.2968 -0.8357 23 9 5.7442 -13.4272 0.1948 24 9 4.3432 -14.5633 -1.2072 25 9 5.4081 -12.6787 -1.9373 26 6 2.9699 -10.1280 -0.1205 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7314 -0.8894 29 1 3.1244 -3.7314 0.8906 30 1 3.8008 -6.1836 0.0022 31 1 1.7212 -7.8750 0.8916 32 1 1.7220 -7.8753 -0.8884 33 1 4.7013 -7.5566 1.3839 34 1 3.6157 -8.7381 2.1559 35 1 6.1065 -9.3868 0.5116 36 1 5.9515 -9.5250 2.2801 37 1 5.6361 -11.7265 1.1695 38 1 4.1518 -11.1999 1.9985 39 1 3.2301 -12.8698 0.5686 40 1 2.8542 -12.4311 -1.1149 41 1 2.3003 -10.3396 0.7132 42 1 2.4256 -10.2329 -1.0590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590566726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -200.275345 kcal Electronic energy + Delta-G solvation = -26897.638033 eV Core-core repulsion = 22395.221125 eV Total energy + Delta-G solvation = -4502.416908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.46864 -48.05281 -47.87015 -39.99891 -38.89442 -35.70440 -33.60080 -32.43145 -31.78703 -29.66277 -29.03977 -25.95001 -25.40222 -24.50356 -23.15828 -21.98029 -20.48127 -20.07383 -18.92076 -18.87498 -17.96567 -17.67701 -16.50017 -16.24386 -15.96820 -15.46277 -15.38689 -14.92800 -14.80908 -14.77784 -14.63037 -14.48099 -14.36042 -14.20396 -14.08921 -14.04007 -13.78267 -13.44269 -13.13211 -12.91174 -12.63951 -12.60439 -12.36397 -12.20978 -11.80703 -11.49451 -11.05854 -11.04958 -11.03911 -10.84547 -10.76974 -10.70673 -9.82827 -9.42354 -9.11256 -9.06663 -8.89139 -8.24586 -6.50515 -6.21876 -3.92560 2.25746 2.88353 3.09206 3.09318 3.23321 3.27612 3.32049 3.39724 3.58438 3.72699 3.98170 4.20289 4.26131 4.32332 4.42060 4.59011 4.64780 4.72364 4.87800 4.94746 5.08855 5.12373 5.13195 5.23074 5.26043 5.31625 5.44263 5.56064 5.64465 5.71012 5.75970 5.88042 5.89672 6.02140 6.13496 6.23428 6.35223 6.60487 7.58919 7.69279 8.34678 8.60438 9.23286 10.85458 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.001713 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.708689 B =16345.627386 C =16619.585327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.128 3.872 15 C -0.095 4.095 16 H 0.089 0.911 17 C -0.120 4.120 18 C -0.115 4.115 19 C 0.036 3.964 20 N -0.532 5.532 21 C 0.009 3.991 22 C 0.458 3.542 23 F -0.184 7.184 24 F -0.185 7.185 25 F -0.171 7.171 26 C 0.067 3.933 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.046 0.954 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.877 -28.214 1.228 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.003 3.997 15 C -0.114 4.114 16 H 0.108 0.892 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.092 4.092 20 N -0.256 5.256 21 C -0.121 4.121 22 C 0.403 3.597 23 F -0.166 7.166 24 F -0.167 7.167 25 F -0.153 7.153 26 C -0.061 4.061 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.232 0.768 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.064 0.936 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.035 -28.324 0.850 30.061 hybrid contribution 2.093 0.921 0.553 2.352 sum 12.128 -27.403 1.403 30.000 Atomic orbital electron populations 1.70010 1.05947 1.27561 1.46773 1.24997 0.95037 0.99031 0.94538 0.86221 0.79233 0.81229 0.78800 1.19935 1.20816 1.19944 1.22829 0.94875 0.91667 1.59062 0.90973 1.85390 1.04953 0.96317 1.96724 1.23530 1.06561 0.95410 1.04912 1.20303 0.86508 0.86285 0.75124 1.90702 1.15395 1.85630 1.47535 1.45967 1.09939 1.05346 1.77949 1.21212 0.95281 0.80810 1.02419 1.21404 0.97212 0.93252 0.99552 0.89225 1.21695 0.97347 0.99686 0.96995 1.21564 0.98063 0.93138 1.02497 1.22560 0.98350 0.99525 0.88721 1.61656 1.25828 1.02717 1.35447 1.23195 0.93988 0.90597 1.04355 1.20512 0.84690 0.78710 0.75773 1.93108 1.68633 1.95773 1.59038 1.93192 1.88607 1.43025 1.91866 1.93215 1.85139 1.82370 1.54559 1.22062 0.90861 0.91026 1.02109 0.92130 0.89211 0.89262 0.76790 0.91642 0.91439 0.91088 0.91701 0.90764 0.90979 0.89149 0.94077 0.89799 0.86181 0.93607 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.65 7.85 -10.99 -0.09 9.57 16 12 O -0.52 -11.57 15.86 5.55 0.09 -11.49 16 13 N -0.74 -9.22 5.31 -60.29 -0.32 -9.54 16 14 C 0.13 1.33 5.07 -4.04 -0.02 1.31 16 15 C -0.10 -0.70 2.39 -90.54 -0.22 -0.92 16 16 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 17 C -0.12 -0.83 5.13 -26.61 -0.14 -0.97 16 18 C -0.11 -0.72 6.09 -26.66 -0.16 -0.88 16 19 C 0.04 0.22 5.23 -3.84 -0.02 0.20 16 20 N -0.53 -3.42 4.40 -234.69 -1.03 -4.45 16 21 C 0.01 0.04 5.12 -3.83 -0.02 0.03 16 22 C 0.46 3.17 3.27 37.16 0.12 3.29 16 23 F -0.18 -1.40 14.67 2.25 0.03 -1.37 16 24 F -0.19 -1.36 17.32 2.25 0.04 -1.33 16 25 F -0.17 -1.51 17.13 2.25 0.04 -1.48 16 26 C 0.07 0.42 4.71 -3.84 -0.02 0.40 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.40 3.89 7.68 -40.82 -0.31 3.58 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.50 7.26 -51.93 -0.38 0.13 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.59 5.47 -51.93 -0.28 0.30 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.31 7.98 -51.93 -0.41 -0.10 16 40 H 0.12 0.44 7.77 -51.93 -0.40 0.03 16 41 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.49 7.92 -51.93 -0.41 0.08 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -34.27 366.98 -8.24 -42.51 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.98 Total: -1.77 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.14 Total: -3.71 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.62 Total: -39.35 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.11 Total: -4.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.27 -8.24 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590566726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.770 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds