Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86808 * 120.00028 * 2 1 4 4 H 1.48504 * 109.46762 * 239.99717 * 3 2 1 5 5 H 1.48498 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47182 * 119.99773 * 3 2 1 7 7 C 1.39906 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99998 * 175.56541 * 7 2 1 9 9 C 1.41151 * 120.00128 * 355.56315 * 7 2 1 10 10 C 1.40867 * 120.16328 * 214.78469 * 9 7 2 11 11 C 1.36379 * 119.82537 * 180.02562 * 10 9 7 12 12 C 1.39474 * 120.16889 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83285 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99914 * 35.29178 * 13 12 11 15 15 O 1.21288 * 120.00038 * 355.70777 * 14 13 12 16 16 C 1.50695 * 120.00500 * 175.71030 * 14 13 12 17 17 N 1.46496 * 109.47638 * 180.02562 * 16 14 13 18 18 C 1.34777 * 120.00054 * 180.02562 * 17 16 14 19 19 O 1.21582 * 120.00116 * 359.97438 * 18 17 16 20 20 C 1.47605 * 119.99975 * 179.97438 * 18 17 16 21 21 C 1.39730 * 120.08487 * 179.97438 * 20 18 17 22 22 C 1.37708 * 119.90918 * 180.02562 * 21 20 18 23 23 C 1.38994 * 120.08593 * 0.02562 * 22 21 20 24 24 O 1.35713 * 119.90979 * 179.97438 * 23 22 21 25 25 C 1.38997 * 120.17863 * 0.25139 * 23 22 21 26 26 C 1.37707 * 120.08502 * 359.44943 * 25 23 22 27 27 C 1.39483 * 120.33814 * 0.26130 * 12 11 10 28 28 C 1.36379 * 120.16193 * 359.47907 * 27 12 11 29 29 H 0.97010 * 119.99477 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.08764 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.91109 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00348 * 215.29344 * 13 12 11 33 33 H 1.09002 * 109.47454 * 59.99539 * 16 14 13 34 34 H 1.09003 * 109.46791 * 299.99929 * 16 14 13 35 35 H 0.96998 * 120.00123 * 359.97438 * 17 16 14 36 36 H 1.08002 * 120.05221 * 359.97438 * 21 20 18 37 37 H 1.07999 * 119.95805 * 179.97438 * 22 21 20 38 38 H 0.96705 * 113.99601 * 90.00042 * 24 23 22 39 39 H 1.08005 * 119.95464 * 179.72592 * 25 23 22 40 40 H 1.08008 * 120.04071 * 180.26818 * 26 25 23 41 41 H 1.07999 * 119.91848 * 179.74113 * 27 12 11 42 42 H 1.07997 * 120.08213 * 180.26124 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0718 9 6 1.3056 -2.4322 0.0957 10 6 1.8648 -3.5179 0.7976 11 6 1.1802 -4.6942 0.8847 12 6 -0.0706 -4.8235 0.2815 13 7 -0.7633 -6.0279 0.3744 14 6 -0.6809 -6.7677 1.4979 15 8 0.0569 -6.4245 2.3973 16 6 -1.5054 -8.0215 1.6368 17 7 -1.2392 -8.6394 2.9381 18 6 -1.8687 -9.7798 3.2839 19 8 -2.6579 -10.2955 2.5161 20 6 -1.6001 -10.4028 4.5949 21 6 -2.2522 -11.5848 4.9555 22 6 -1.9992 -12.1626 6.1796 23 6 -1.0971 -11.5712 7.0562 24 8 -0.8509 -12.1434 8.2619 25 6 -0.4508 -10.3923 6.7035 26 6 -0.6937 -9.8116 5.4787 27 6 -0.6287 -3.7545 -0.4194 28 6 0.0416 -2.5703 -0.5106 29 1 -0.4850 0.8402 -0.0004 30 1 2.8335 -3.4194 1.2648 31 1 1.6079 -5.5277 1.4222 32 1 -1.3051 -6.3345 -0.3695 33 1 -1.2421 -8.7194 0.8420 34 1 -2.5635 -7.7703 1.5639 35 1 -0.6094 -8.2282 3.5506 36 1 -2.9542 -12.0444 4.2754 37 1 -2.5031 -13.0760 6.4593 38 1 -0.1233 -12.7803 8.2537 39 1 0.2462 -9.9334 7.3893 40 1 -0.1878 -8.8978 5.2037 41 1 -1.5959 -3.8635 -0.8874 42 1 -0.3936 -1.7421 -1.0501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608985428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -61.626536 kcal Electronic energy + Delta-G solvation = -26893.365877 eV Core-core repulsion = 22803.374021 eV Total energy + Delta-G solvation = -4089.991855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.70677 -39.92577 -39.11503 -37.40799 -36.82911 -34.87932 -34.39576 -33.03445 -31.50612 -30.77773 -29.69392 -29.24148 -27.63199 -24.89588 -23.73165 -23.06973 -21.75694 -20.95333 -20.74225 -19.90399 -18.94536 -18.48268 -17.38538 -17.00173 -16.49147 -16.12918 -15.96176 -15.77936 -15.33141 -15.19691 -15.09697 -14.67976 -14.21351 -13.99405 -13.89925 -13.33303 -13.23855 -12.94310 -12.69907 -12.69661 -12.42886 -12.34100 -12.17895 -11.77418 -11.44077 -11.19267 -11.07579 -10.91961 -10.79593 -10.27734 -10.15229 -9.59068 -9.55847 -9.49603 -9.41620 -9.25811 -9.05313 -8.98582 -7.62223 -6.95820 -6.67714 -4.40819 0.35379 0.91316 2.38917 2.48077 2.74186 2.93106 3.02831 3.06106 3.08431 3.24328 3.39630 3.62993 3.71689 3.93518 4.39534 4.45636 4.51260 4.63654 4.84883 4.86381 5.04556 5.19353 5.22301 5.29112 5.54796 5.58403 5.75745 5.90602 5.93901 6.05380 6.12844 6.26920 6.35325 6.63522 6.81658 6.99409 7.11446 7.14791 7.21787 7.27265 7.56410 7.63106 7.74813 7.93720 7.99155 8.14472 8.24118 8.49192 8.60006 8.86416 8.92100 10.23133 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.001803 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.185975 B =15521.883888 C =16452.401381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.207 4.207 11 C -0.083 4.083 12 C -0.003 4.003 13 N -0.642 5.642 14 C 0.493 3.507 15 O -0.532 6.532 16 C 0.101 3.899 17 N -0.710 5.710 18 C 0.562 3.438 19 O -0.541 6.541 20 C -0.144 4.144 21 C -0.042 4.042 22 C -0.156 4.156 23 C 0.131 3.869 24 O -0.499 6.499 25 C -0.152 4.152 26 C -0.065 4.065 27 C -0.117 4.117 28 C -0.142 4.142 29 H 0.279 0.721 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.399 0.601 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.412 0.588 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.395 0.605 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -19.729 8.218 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.103 4.103 12 C -0.095 4.095 13 N -0.284 5.284 14 C 0.279 3.721 15 O -0.409 6.409 16 C -0.026 4.026 17 N -0.365 5.365 18 C 0.349 3.651 19 O -0.419 6.419 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.175 4.175 23 C 0.086 3.914 24 O -0.310 6.310 25 C -0.171 4.171 26 C -0.084 4.084 27 C -0.138 4.138 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.233 0.767 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.111 0.889 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.763 -19.298 8.489 21.416 hybrid contribution 0.675 0.624 -0.074 0.922 sum -3.088 -18.674 8.415 20.714 Atomic orbital electron populations 1.69750 1.07305 1.28931 1.37711 1.25898 0.94967 1.01238 0.92500 0.86231 0.79801 0.80015 0.79809 1.19011 1.20395 1.19062 1.19485 0.94762 0.90217 1.44579 0.90569 1.17742 0.92271 0.92014 0.88098 1.20802 1.01275 0.94965 1.05643 1.20376 0.92703 0.97831 0.99391 1.17242 0.94347 0.85693 1.12236 1.42855 1.48452 1.21232 1.15893 1.20381 0.83641 0.85310 0.82785 1.90678 1.39328 1.70776 1.40120 1.21080 1.00789 0.93741 0.86996 1.45616 1.46268 1.25581 1.19078 1.18121 0.80407 0.80155 0.86376 1.90783 1.35437 1.63134 1.52556 1.19925 1.01483 0.98123 0.95131 1.21158 0.96545 0.92908 0.95438 1.21420 1.00647 1.01732 0.93658 1.18755 0.95234 0.92803 0.84593 1.84764 1.57325 1.61174 1.27706 1.21404 1.01684 0.96919 0.97062 1.21324 0.95354 0.98936 0.92800 1.20323 0.98380 0.93084 1.01974 1.21203 0.97280 0.95575 1.02111 0.90995 0.88545 0.87488 0.76664 0.88358 0.88242 0.74828 0.84036 0.84616 0.74792 0.84512 0.84639 0.88946 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.67 10.59 55.55 0.59 -20.09 16 2 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 3 Si 0.92 18.65 29.56 -169.99 -5.03 13.63 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.00 9.02 -37.85 -0.34 -12.34 16 8 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 10 C -0.21 -5.07 9.74 -39.26 -0.38 -5.45 16 11 C -0.08 -1.90 8.61 -39.79 -0.34 -2.24 16 12 C 0.00 -0.07 6.31 -83.57 -0.53 -0.59 16 13 N -0.64 -10.31 5.30 -9.74 -0.05 -10.36 16 14 C 0.49 7.67 7.73 -10.99 -0.08 7.59 16 15 O -0.53 -10.08 13.09 5.55 0.07 -10.01 16 16 C 0.10 1.20 6.15 -5.20 -0.03 1.17 16 17 N -0.71 -8.51 5.48 -62.51 -0.34 -8.86 16 18 C 0.56 6.99 7.76 -12.44 -0.10 6.90 16 19 O -0.54 -8.08 16.34 5.29 0.09 -7.99 16 20 C -0.14 -1.50 5.87 -104.96 -0.62 -2.11 16 21 C -0.04 -0.39 9.58 -39.22 -0.38 -0.76 16 22 C -0.16 -1.22 9.97 -39.49 -0.39 -1.62 16 23 C 0.13 1.04 6.71 -39.02 -0.26 0.78 16 24 O -0.50 -3.35 13.49 -18.85 -0.25 -3.60 16 25 C -0.15 -1.23 9.97 -39.49 -0.39 -1.63 16 26 C -0.07 -0.59 9.53 -39.22 -0.37 -0.96 16 27 C -0.12 -2.58 9.90 -39.79 -0.39 -2.97 16 28 C -0.14 -3.54 8.62 -39.26 -0.34 -3.88 16 29 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.11 2.38 6.22 -52.49 -0.33 2.05 16 32 H 0.40 4.89 8.82 -40.82 -0.36 4.53 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.41 4.81 5.46 -40.82 -0.22 4.59 16 36 H 0.14 1.26 7.64 -52.49 -0.40 0.86 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.39 0.69 9.06 45.56 0.41 1.11 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.14 1.09 6.40 -52.48 -0.34 0.75 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.13 3.42 6.13 -52.49 -0.32 3.10 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -32.61 366.01 -8.69 -41.30 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -3.64 Total: 14.90 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -5.64 Total: -14.44 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.19 Total: -39.30 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.10 Total: -21.60 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.61 -8.69 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608985428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.330 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds