Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48504 * 109.47519 * 240.00619 * 3 2 1 5 5 H 1.48502 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46986 * 120.00547 * 3 2 1 7 7 C 1.38653 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99855 * 179.97438 * 7 2 1 9 9 O 1.34822 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00036 * 185.40512 * 9 7 2 11 11 C 1.38879 * 120.06871 * 5.90170 * 10 9 7 12 12 C 1.38106 * 119.92995 * 180.02562 * 11 10 9 13 13 C 1.38293 * 120.06699 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.92968 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47497 * 89.99932 * 14 13 12 16 16 O 1.21290 * 119.99677 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00147 * 180.02562 * 15 14 13 18 18 C 1.39957 * 119.99708 * 185.21012 * 17 15 14 19 19 C 1.38995 * 119.99769 * 213.67429 * 18 17 15 20 20 C 1.38210 * 120.22457 * 180.02562 * 19 18 17 21 21 C 1.38027 * 120.21944 * 359.67073 * 20 19 18 22 22 C 1.39579 * 119.99630 * 0.62422 * 21 20 19 23 23 C 1.47855 * 120.11256 * 179.67329 * 22 21 20 24 24 N 1.34778 * 120.00078 * 359.73292 * 23 22 21 25 25 O 1.21559 * 119.99980 * 179.72489 * 23 22 21 26 26 C 1.38586 * 120.00261 * 33.69685 * 18 17 15 27 27 C 1.38304 * 120.14255 * 0.25120 * 13 12 11 28 28 C 1.38099 * 120.06511 * 359.45351 * 27 13 12 29 29 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03461 * 0.02562 * 11 10 9 31 31 H 1.07993 * 119.96209 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.46858 * 329.99558 * 14 13 12 33 33 H 1.09001 * 109.47284 * 210.00118 * 14 13 12 34 34 H 0.96995 * 120.00056 * 5.21188 * 17 15 14 35 35 H 1.08003 * 119.88810 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.89174 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00265 * 180.32325 * 21 20 19 38 38 H 0.96997 * 119.99354 * 359.97438 * 24 23 22 39 39 H 0.96996 * 120.00156 * 179.72485 * 24 23 22 40 40 H 1.08003 * 120.11091 * 0.02562 * 26 18 17 41 41 H 1.08005 * 119.96904 * 179.70206 * 27 13 12 42 42 H 1.08005 * 120.02867 * 180.27375 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5043 0.1129 11 6 3.4366 -3.4284 0.3449 12 6 4.1813 -4.5858 0.4593 13 6 3.5671 -5.8193 0.3424 14 6 4.3829 -7.0803 0.4671 15 6 4.4180 -7.5154 1.9095 16 8 3.8372 -6.8657 2.7532 17 7 5.0946 -8.6264 2.2620 18 6 5.0378 -9.0914 3.5809 19 6 6.1454 -9.7109 4.1477 20 6 6.0943 -10.1723 5.4495 21 6 4.9450 -10.0150 6.1976 22 6 3.8253 -9.3999 5.6356 23 6 2.5905 -9.2365 6.4324 24 7 2.5431 -9.6868 7.7018 25 8 1.6181 -8.6960 5.9425 26 6 3.8769 -8.9347 4.3215 27 6 2.2068 -5.8982 0.1056 28 6 1.4556 -4.7446 -0.0036 29 1 -0.4849 0.8401 0.0004 30 1 3.9168 -2.4654 0.4358 31 1 5.2445 -4.5274 0.6393 32 1 5.3987 -6.8917 0.1197 33 1 3.9319 -7.8663 -0.1386 34 1 5.6210 -9.1036 1.6018 35 1 7.0489 -9.8328 3.5686 36 1 6.9579 -10.6532 5.8844 37 1 4.9107 -10.3723 7.2162 38 1 3.3190 -10.1183 8.0925 39 1 1.7344 -9.5761 8.2258 40 1 3.0149 -8.4543 3.8826 41 1 1.7309 -6.8630 0.0101 42 1 0.3925 -4.8069 -0.1841 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731960688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -44.554895 kcal Electronic energy + Delta-G solvation = -27426.253097 eV Core-core repulsion = 23337.001524 eV Total energy + Delta-G solvation = -4089.251573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85779 -39.77652 -38.90841 -38.10431 -36.47841 -34.94118 -33.90727 -32.46548 -31.56603 -31.32028 -30.10604 -29.68435 -26.63071 -25.11051 -24.53515 -23.12344 -21.92516 -21.21295 -20.75839 -20.06813 -18.71370 -17.93528 -17.29039 -17.17945 -16.84389 -16.45179 -16.27743 -15.52244 -14.93140 -14.81819 -14.63803 -14.43034 -14.34411 -14.08811 -13.84058 -13.81396 -13.45547 -13.42565 -12.97415 -12.64786 -12.47595 -12.28349 -11.89737 -11.82736 -11.50369 -11.22022 -10.83603 -10.73711 -10.64310 -10.57417 -10.38488 -10.26499 -9.96994 -9.81736 -9.30876 -9.25966 -8.77074 -8.42503 -8.09702 -7.12336 -6.39761 -3.98285 0.52850 1.02683 2.26273 2.30729 2.45795 2.78365 2.92941 3.16454 3.18317 3.20643 3.25840 3.62188 4.01315 4.42543 4.48292 4.56028 4.71348 4.84609 4.88150 5.09626 5.15307 5.17851 5.23940 5.30492 5.34883 5.56569 5.65108 5.76105 5.89482 5.91451 5.97643 6.05405 6.12678 6.27525 6.47134 6.50713 6.68940 6.75015 6.96225 7.04427 7.09874 7.22058 7.29304 7.40418 7.50072 7.88941 8.01935 8.05219 8.11936 9.05617 9.76647 10.78326 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.002261 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.948206 B =12382.531591 C =13236.117180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.232 4.232 12 C -0.055 4.055 13 C -0.176 4.176 14 C -0.076 4.076 15 C 0.505 3.495 16 O -0.491 6.491 17 N -0.684 5.684 18 C 0.149 3.851 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.109 4.109 22 C -0.119 4.119 23 C 0.561 3.439 24 N -0.853 5.853 25 O -0.527 6.527 26 C -0.063 4.063 27 C -0.058 4.058 28 C -0.191 4.191 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.411 0.589 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.399 0.601 39 H 0.405 0.595 40 H 0.151 0.849 41 H 0.109 0.891 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.206 -24.257 9.488 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.080 6.080 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.115 4.115 15 C 0.293 3.707 16 O -0.362 6.362 17 N -0.331 5.331 18 C 0.055 3.945 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.123 4.123 23 C 0.346 3.654 24 N -0.418 5.418 25 O -0.403 6.403 26 C -0.084 4.084 27 C -0.076 4.076 28 C -0.210 4.210 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.229 0.771 39 H 0.236 0.764 40 H 0.169 0.831 41 H 0.127 0.873 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.751 -23.107 9.513 28.522 hybrid contribution 0.972 0.395 0.285 1.087 sum 14.723 -22.713 9.799 28.786 Atomic orbital electron populations 1.70035 1.05954 1.27739 1.46015 1.25292 0.95842 0.98827 0.96591 0.85787 0.78698 0.79821 0.79148 1.19512 1.20287 1.19519 1.21270 0.91743 0.80897 1.52820 0.89172 1.83993 1.34276 1.11477 1.78263 1.19405 0.90371 0.87973 0.91863 1.21101 0.94320 0.98726 1.11025 1.20495 0.98109 0.91757 0.96996 1.18580 0.93904 0.92310 1.12910 1.20399 1.01991 0.97861 0.91291 1.21429 0.77839 0.79006 0.92463 1.90814 1.41283 1.52208 1.51893 1.43785 1.51885 1.28463 1.09008 1.17680 0.93426 0.97552 0.85882 1.21116 0.96718 1.00872 0.95875 1.20846 0.98022 1.00138 0.93623 1.21198 0.92826 0.99141 0.99695 1.19735 0.94312 1.03122 0.95143 1.18286 0.87596 0.77694 0.81811 1.43725 1.19737 1.63750 1.14540 1.90891 1.36776 1.41890 1.70728 1.21349 0.97719 0.96312 0.93016 1.20406 0.92712 0.96760 0.97726 1.20156 0.99841 0.90035 1.10986 0.91987 0.85587 0.87837 0.88662 0.88479 0.75345 0.85169 0.85011 0.85647 0.77130 0.76389 0.83149 0.87313 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.39 -11.30 9.44 30.89 0.29 -11.01 16 8 H 0.09 2.41 5.30 -52.49 -0.28 2.13 16 9 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 10 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 11 C -0.23 -5.32 9.13 -39.39 -0.36 -5.68 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.18 -3.08 4.38 -104.58 -0.46 -3.54 16 14 C -0.08 -0.91 5.83 -29.03 -0.17 -1.08 16 15 C 0.50 6.89 7.56 -10.99 -0.08 6.80 16 16 O -0.49 -9.36 13.74 5.55 0.08 -9.28 16 17 N -0.68 -6.64 5.34 -9.89 -0.05 -6.70 16 18 C 0.15 1.62 6.27 -83.74 -0.52 1.09 16 19 C -0.12 -0.96 9.95 -39.31 -0.39 -1.35 16 20 C -0.11 -0.71 10.02 -39.67 -0.40 -1.11 16 21 C -0.11 -0.81 9.54 -39.16 -0.37 -1.19 16 22 C -0.12 -1.36 5.87 -104.99 -0.62 -1.98 16 23 C 0.56 6.98 8.05 -12.32 -0.10 6.88 16 24 N -0.85 -6.10 8.82 30.53 0.27 -5.83 16 25 O -0.53 -9.31 17.18 5.31 0.09 -9.22 16 26 C -0.06 -0.86 8.20 -38.98 -0.32 -1.18 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 28 C -0.19 -4.30 9.99 -39.40 -0.39 -4.69 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.13 2.88 5.72 -52.49 -0.30 2.58 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.41 2.26 8.82 -40.82 -0.36 1.90 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.49 6.40 -52.49 -0.34 0.15 16 38 H 0.40 1.45 6.86 -40.82 -0.28 1.17 16 39 H 0.40 2.46 8.93 -40.82 -0.36 2.10 16 40 H 0.15 2.59 6.03 -52.48 -0.32 2.27 16 41 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -39.68 367.96 -7.68 -47.35 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.32 Total: 8.75 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.02 Total: -16.17 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.98 Total: -37.81 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.17 Total: -23.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.68 -7.68 -47.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731960688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.800 kcal (2) G-P(sol) polarization free energy of solvation -39.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds