Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31499 * 119.65976 * 2 1 4 4 C 1.32784 * 121.77518 * 180.02562 * 3 2 1 5 5 C 1.48211 * 119.56739 * 179.97438 * 4 3 2 6 6 C 1.39441 * 120.13194 * 179.72224 * 5 4 3 7 7 C 1.37985 * 119.86183 * 179.72300 * 6 5 4 8 8 C 1.38346 * 120.13581 * 0.55777 * 7 6 5 9 9 C 1.38340 * 120.26095 * 359.71824 * 8 7 6 10 10 C 1.37989 * 120.13089 * 0.02562 * 9 8 7 11 11 C 1.39542 * 120.87043 * 359.97438 * 4 3 2 12 12 C 1.38009 * 119.22496 * 359.76373 * 11 4 3 13 13 C 1.39714 * 119.65797 * 180.02562 * 2 1 3 14 14 C 1.47575 * 120.46535 * 359.97438 * 13 2 1 15 15 O 1.21612 * 119.99905 * 300.82597 * 14 13 2 16 16 N 1.34780 * 119.99922 * 120.83426 * 14 13 2 17 17 C 1.36844 * 119.99830 * 184.39592 * 16 14 13 18 18 H 1.08002 * 120.00370 * 346.87111 * 17 16 14 19 19 C 1.39059 * 120.00162 * 166.87459 * 17 16 14 20 20 N 1.31354 * 119.99938 * 359.84421 * 19 17 16 21 21 Si 1.86795 * 120.00173 * 179.85110 * 19 17 16 22 22 H 1.48498 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47370 * 119.99579 * 21 19 17 24 24 H 1.48501 * 109.47154 * 239.99495 * 21 19 17 25 25 C 1.46495 * 120.00033 * 4.38955 * 16 14 13 26 26 C 1.50699 * 109.47542 * 263.21543 * 25 16 14 27 27 O 1.20833 * 119.99795 * 0.02562 * 26 25 16 28 28 O 1.34229 * 120.00290 * 179.97438 * 26 25 16 29 29 H 1.09004 * 109.47138 * 274.37900 * 1 2 3 30 30 H 1.09004 * 109.47392 * 34.37234 * 1 2 3 31 31 H 1.09002 * 109.47304 * 154.37783 * 1 2 3 32 32 H 1.07997 * 120.06213 * 359.97438 * 6 5 4 33 33 H 1.08007 * 119.93250 * 180.27985 * 7 6 5 34 34 H 1.07999 * 119.86994 * 179.70171 * 8 7 6 35 35 H 1.07998 * 119.93333 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.06529 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.38418 * 180.02562 * 11 4 3 38 38 H 1.07996 * 120.81570 * 180.28662 * 12 11 4 39 39 H 0.96996 * 120.00601 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.47317 * 23.21620 * 25 16 14 41 41 H 1.09000 * 109.46861 * 143.21407 * 25 16 14 42 42 H 0.96699 * 116.99855 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1577 1.1427 0.0000 4 6 3.4846 1.1917 -0.0005 5 6 4.1679 2.5069 -0.0011 6 6 5.5607 2.5721 0.0043 7 6 6.1911 3.7996 -0.0021 8 6 5.4441 4.9640 -0.0020 9 6 4.0619 4.9056 -0.0015 10 6 3.4203 3.6840 -0.0005 11 6 4.2443 0.0212 -0.0005 12 6 3.6009 -1.1997 0.0050 13 6 2.1983 -1.2141 -0.0005 14 6 1.4631 -2.4937 -0.0005 15 8 0.6926 -2.7523 0.9041 16 7 1.6458 -3.3758 -1.0031 17 6 0.8988 -4.5214 -1.0511 18 1 0.3214 -4.8261 -0.1907 19 6 0.8830 -5.2933 -2.2077 20 7 1.5828 -4.9212 -3.2552 21 14 -0.1334 -6.8591 -2.2718 22 1 -0.8238 -7.0547 -0.9717 23 1 -1.1416 -6.7508 -3.3567 24 1 0.7575 -8.0171 -2.5378 25 6 2.6440 -3.1082 -2.0414 26 6 1.9696 -2.4919 -3.2398 27 8 0.7773 -2.2957 -3.2276 28 8 2.6933 -2.1598 -4.3204 29 1 -0.3633 0.0785 1.0247 30 1 -0.3634 0.8482 -0.5802 31 1 -0.3634 -0.9266 -0.4444 32 1 6.1448 1.6638 0.0092 33 1 7.2699 3.8514 -0.0025 34 1 5.9419 5.9224 -0.0021 35 1 3.4840 5.8180 -0.0019 36 1 2.3411 3.6396 -0.0005 37 1 5.3233 0.0703 -0.0005 38 1 4.1635 -2.1215 0.0097 39 1 1.5716 -5.4593 -4.0621 40 1 3.3959 -2.4206 -1.6540 41 1 3.1228 -4.0426 -2.3345 42 1 2.2166 -1.7670 -5.0643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738831409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -41.455974 kcal Electronic energy + Delta-G solvation = -29428.186489 eV Core-core repulsion = 25339.069295 eV Total energy + Delta-G solvation = -4089.117194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54943 -39.38652 -38.74344 -37.82679 -35.33549 -34.50615 -33.26396 -32.90568 -31.63013 -31.00108 -30.06668 -27.85389 -27.35147 -25.37645 -24.00786 -23.05031 -21.64770 -21.34699 -20.98436 -19.61466 -17.49146 -17.24939 -17.07889 -16.60576 -16.27826 -15.80331 -15.52272 -15.17680 -14.61026 -14.49130 -14.39674 -14.33763 -14.02134 -13.83509 -13.42611 -13.21160 -13.02670 -12.92002 -12.74117 -12.05706 -12.02817 -11.88173 -11.73591 -11.67470 -11.37133 -11.26807 -11.12965 -11.06865 -10.51531 -10.44497 -10.35714 -9.79641 -9.53003 -9.42473 -9.31769 -9.15756 -9.03885 -8.71152 -8.15220 -8.01683 -6.55020 -4.06834 0.54466 1.32205 1.45121 1.74895 3.03599 3.16887 3.23707 3.39507 3.60203 3.67352 3.94382 4.13907 4.15164 4.25973 4.59696 4.65588 4.84788 4.92452 4.96456 4.98956 5.04501 5.17729 5.29655 5.35752 5.53296 5.59388 5.77502 5.83779 5.88600 5.92137 6.01413 6.09880 6.19298 6.34230 6.36547 6.39577 6.50076 6.52251 6.61339 6.71128 6.85172 6.92122 7.36344 7.57782 7.77044 8.15632 8.20356 8.90145 9.05408 9.17764 9.63220 10.47037 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.003188 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.810698 B = 8780.668814 C = 9225.420832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.174 3.826 3 N -0.478 5.478 4 C 0.162 3.838 5 C -0.039 4.039 6 C -0.103 4.103 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.127 4.127 10 C -0.082 4.082 11 C -0.170 4.170 12 C -0.058 4.058 13 C -0.143 4.143 14 C 0.494 3.506 15 O -0.567 6.567 16 N -0.419 5.419 17 C -0.284 4.284 18 H 0.113 0.887 19 C 0.029 3.971 20 N -0.895 5.895 21 Si 0.944 3.056 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.139 3.861 26 C 0.502 3.498 27 O -0.519 6.519 28 O -0.534 6.534 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.274 0.726 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 12.938 1.437 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.034 3.966 3 N -0.188 5.188 4 C 0.026 3.974 5 C -0.040 4.040 6 C -0.122 4.122 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.145 4.145 10 C -0.100 4.100 11 C -0.190 4.190 12 C -0.084 4.084 13 C -0.149 4.149 14 C 0.282 3.718 15 O -0.451 6.451 16 N -0.137 5.137 17 C -0.411 4.411 18 H 0.131 0.869 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.770 3.230 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.205 1.205 25 C 0.013 3.987 26 C 0.343 3.657 27 O -0.406 6.406 28 O -0.345 6.345 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.160 0.840 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.074 13.297 2.052 16.228 hybrid contribution -0.176 -1.301 -0.991 1.645 sum 8.897 11.996 1.061 14.973 Atomic orbital electron populations 1.20727 0.88019 1.03860 1.03147 1.21227 0.97083 0.86297 0.91977 1.67385 1.08555 1.29099 1.13729 1.19723 0.89189 0.92160 0.96349 1.18569 0.92641 0.91222 1.01593 1.21264 0.93287 0.98303 0.99306 1.21033 0.99868 0.92223 1.01159 1.21242 0.94186 0.98309 0.99723 1.21146 0.94643 0.97725 1.00971 1.21389 1.00959 0.91141 0.96538 1.21877 1.01019 0.92229 1.03880 1.21696 0.93266 0.98521 0.94897 1.21212 0.94432 0.96380 1.02859 1.17585 0.85480 0.82856 0.85829 1.90662 1.39978 1.77059 1.37363 1.43415 1.32914 1.17655 1.19697 1.19942 1.23946 0.96851 1.00375 0.86911 1.25310 0.97089 1.00486 0.94203 1.69427 1.40858 1.39320 1.04168 0.85564 0.79118 0.79508 0.78764 1.19025 1.20570 1.20530 1.21193 0.90165 1.02657 0.84641 1.23447 0.86332 0.72378 0.83545 1.90580 1.16498 1.51599 1.81906 1.84508 1.46412 1.76204 1.27345 0.90091 0.91012 0.89566 0.85458 0.85823 0.86151 0.85896 0.84693 0.84431 0.83946 0.91448 0.90900 0.83995 0.75484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.54 36.00 0.34 -1.54 16 2 C 0.17 3.41 6.82 -82.19 -0.56 2.85 16 3 N -0.48 -8.56 9.31 -5.71 -0.05 -8.61 16 4 C 0.16 2.56 6.73 -82.87 -0.56 2.01 16 5 C -0.04 -0.53 5.88 -104.90 -0.62 -1.15 16 6 C -0.10 -1.12 9.42 -39.23 -0.37 -1.49 16 7 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 8 C -0.12 -1.06 10.04 -39.50 -0.40 -1.46 16 9 C -0.13 -1.29 10.03 -39.64 -0.40 -1.69 16 10 C -0.08 -1.03 9.57 -39.22 -0.38 -1.40 16 11 C -0.17 -2.46 9.44 -39.18 -0.37 -2.83 16 12 C -0.06 -0.96 7.68 -38.90 -0.30 -1.26 16 13 C -0.14 -2.91 4.97 -104.77 -0.52 -3.43 16 14 C 0.49 11.90 5.84 -12.45 -0.07 11.83 16 15 O -0.57 -15.22 15.95 5.27 0.08 -15.14 16 16 N -0.42 -10.32 2.18 -117.27 -0.26 -10.58 16 17 C -0.28 -7.53 9.30 -15.01 -0.14 -7.67 16 18 H 0.11 3.11 7.22 -52.49 -0.38 2.73 16 19 C 0.03 0.74 5.26 -17.45 -0.09 0.65 16 20 N -0.89 -22.30 7.76 55.50 0.43 -21.87 16 21 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.14 3.04 5.17 -5.20 -0.03 3.01 16 26 C 0.50 11.46 6.03 36.01 0.22 11.68 16 27 O -0.52 -13.69 16.59 -18.76 -0.31 -14.00 16 28 O -0.53 -10.14 13.42 -39.26 -0.53 -10.67 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.88 6.71 -51.93 -0.35 1.53 16 32 H 0.13 1.13 6.17 -52.49 -0.32 0.81 16 33 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.76 7.53 -52.48 -0.40 1.37 16 37 H 0.14 1.47 6.17 -52.48 -0.32 1.15 16 38 H 0.14 2.07 7.39 -52.49 -0.39 1.68 16 39 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.07 1.37 4.21 -51.93 -0.22 1.15 16 41 H 0.14 3.19 6.30 -51.93 -0.33 2.87 16 42 H 0.39 5.83 9.10 45.56 0.41 6.25 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.80 357.40 -8.44 -41.24 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.54 Total: 12.40 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -4.63 Total: 6.55 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.12 Total: -41.05 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.75 Total: -39.80 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.80 -8.44 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738831409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.219 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds