Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31499 * 119.65976 * 2 1 4 4 C 1.32784 * 121.77518 * 180.02562 * 3 2 1 5 5 C 1.48211 * 119.56739 * 179.97438 * 4 3 2 6 6 C 1.39441 * 120.13194 * 179.72224 * 5 4 3 7 7 C 1.37985 * 119.86183 * 179.72300 * 6 5 4 8 8 C 1.38346 * 120.13581 * 0.55777 * 7 6 5 9 9 C 1.38340 * 120.26095 * 359.71824 * 8 7 6 10 10 C 1.37989 * 120.13089 * 0.02562 * 9 8 7 11 11 C 1.39542 * 120.87043 * 359.97438 * 4 3 2 12 12 C 1.38009 * 119.22496 * 359.76373 * 11 4 3 13 13 C 1.39714 * 119.65797 * 180.02562 * 2 1 3 14 14 C 1.47575 * 120.46535 * 359.97438 * 13 2 1 15 15 O 1.21612 * 119.99905 * 300.82597 * 14 13 2 16 16 N 1.34780 * 119.99922 * 120.83426 * 14 13 2 17 17 C 1.36844 * 119.99830 * 184.39592 * 16 14 13 18 18 H 1.08002 * 120.00370 * 346.87111 * 17 16 14 19 19 C 1.39059 * 120.00162 * 166.87459 * 17 16 14 20 20 N 1.31354 * 119.99938 * 359.84421 * 19 17 16 21 21 Si 1.86795 * 120.00173 * 179.85110 * 19 17 16 22 22 H 1.48498 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47370 * 119.99579 * 21 19 17 24 24 H 1.48501 * 109.47154 * 239.99495 * 21 19 17 25 25 C 1.46495 * 120.00033 * 4.38955 * 16 14 13 26 26 C 1.50699 * 109.47542 * 263.21543 * 25 16 14 27 27 O 1.20833 * 119.99795 * 0.02562 * 26 25 16 28 28 O 1.34229 * 120.00290 * 179.97438 * 26 25 16 29 29 H 1.09004 * 109.47138 * 274.37900 * 1 2 3 30 30 H 1.09004 * 109.47392 * 34.37234 * 1 2 3 31 31 H 1.09002 * 109.47304 * 154.37783 * 1 2 3 32 32 H 1.07997 * 120.06213 * 359.97438 * 6 5 4 33 33 H 1.08007 * 119.93250 * 180.27985 * 7 6 5 34 34 H 1.07999 * 119.86994 * 179.70171 * 8 7 6 35 35 H 1.07998 * 119.93333 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.06529 * 180.02562 * 10 9 8 37 37 H 1.08007 * 120.38418 * 180.02562 * 11 4 3 38 38 H 1.07996 * 120.81570 * 180.28662 * 12 11 4 39 39 H 0.96996 * 120.00601 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.47317 * 23.21620 * 25 16 14 41 41 H 1.09000 * 109.46861 * 143.21407 * 25 16 14 42 42 H 0.96699 * 116.99855 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1577 1.1427 0.0000 4 6 3.4846 1.1917 -0.0005 5 6 4.1679 2.5069 -0.0011 6 6 5.5607 2.5721 0.0043 7 6 6.1911 3.7996 -0.0021 8 6 5.4441 4.9640 -0.0020 9 6 4.0619 4.9056 -0.0015 10 6 3.4203 3.6840 -0.0005 11 6 4.2443 0.0212 -0.0005 12 6 3.6009 -1.1997 0.0050 13 6 2.1983 -1.2141 -0.0005 14 6 1.4631 -2.4937 -0.0005 15 8 0.6926 -2.7523 0.9041 16 7 1.6458 -3.3758 -1.0031 17 6 0.8988 -4.5214 -1.0511 18 1 0.3214 -4.8261 -0.1907 19 6 0.8830 -5.2933 -2.2077 20 7 1.5828 -4.9212 -3.2552 21 14 -0.1334 -6.8591 -2.2718 22 1 -0.8238 -7.0547 -0.9717 23 1 -1.1416 -6.7508 -3.3567 24 1 0.7575 -8.0171 -2.5378 25 6 2.6440 -3.1082 -2.0414 26 6 1.9696 -2.4919 -3.2398 27 8 0.7773 -2.2957 -3.2276 28 8 2.6933 -2.1598 -4.3204 29 1 -0.3633 0.0785 1.0247 30 1 -0.3634 0.8482 -0.5802 31 1 -0.3634 -0.9266 -0.4444 32 1 6.1448 1.6638 0.0092 33 1 7.2699 3.8514 -0.0025 34 1 5.9419 5.9224 -0.0021 35 1 3.4840 5.8180 -0.0019 36 1 2.3411 3.6396 -0.0005 37 1 5.3233 0.0703 -0.0005 38 1 4.1635 -2.1215 0.0097 39 1 1.5716 -5.4593 -4.0621 40 1 3.3959 -2.4206 -1.6540 41 1 3.1228 -4.0426 -2.3345 42 1 2.2166 -1.7670 -5.0643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738831409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -61.560637 kcal Electronic energy + Delta-G solvation = -29429.058293 eV Core-core repulsion = 25339.069295 eV Total energy + Delta-G solvation = -4089.988998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97998 -40.92995 -40.04397 -39.29679 -37.12970 -36.34386 -34.50901 -34.39948 -33.33452 -31.82732 -31.17292 -29.63103 -28.81576 -27.01031 -25.39958 -24.09421 -22.95453 -22.60289 -22.39661 -21.18679 -19.16206 -18.79996 -18.43235 -18.28225 -17.68124 -17.23550 -16.90896 -16.71619 -16.19967 -16.12157 -15.62567 -15.50163 -15.38487 -15.11439 -14.89334 -14.51097 -14.31366 -14.04950 -14.01202 -13.75116 -13.58779 -13.33583 -13.20207 -13.17153 -13.05647 -12.78039 -12.46318 -12.17030 -12.14534 -12.13284 -11.93431 -11.56958 -11.03814 -11.01270 -10.82881 -10.49760 -10.40276 -10.03129 -9.81709 -9.16957 -8.45158 -6.05481 -0.60057 0.13684 0.54537 0.68994 1.30680 1.38859 1.52311 1.67277 1.88813 2.17268 2.45461 2.59552 2.82870 3.00354 3.08493 3.13133 3.51454 3.61334 3.72866 4.00538 4.07194 4.17687 4.19887 4.27771 4.35501 4.48444 4.54366 4.58477 4.62706 4.69961 4.83838 4.85153 4.97557 5.00785 5.06435 5.08678 5.22409 5.35637 5.46103 5.62028 5.65728 5.67862 5.88305 5.96220 6.09964 6.29300 6.82765 6.98205 7.19243 7.44836 7.76661 8.54239 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.003188 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.810698 B = 8780.668814 C = 9225.420832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.157 3.843 3 N -0.491 5.491 4 C 0.166 3.834 5 C -0.072 4.072 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.100 4.100 11 C -0.157 4.157 12 C -0.054 4.054 13 C -0.177 4.177 14 C 0.494 3.506 15 O -0.610 6.610 16 N -0.430 5.430 17 C -0.321 4.321 18 H 0.086 0.914 19 C 0.001 3.999 20 N -0.900 5.900 21 Si 1.000 3.000 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C 0.141 3.859 26 C 0.505 3.495 27 O -0.562 6.562 28 O -0.520 6.520 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.277 0.723 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 14.862 0.729 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.018 3.982 3 N -0.200 5.200 4 C 0.029 3.971 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.142 4.142 8 C -0.125 4.125 9 C -0.150 4.150 10 C -0.119 4.119 11 C -0.176 4.176 12 C -0.080 4.080 13 C -0.183 4.183 14 C 0.283 3.717 15 O -0.497 6.497 16 N -0.147 5.147 17 C -0.448 4.448 18 H 0.104 0.896 19 C -0.198 4.198 20 N -0.542 5.542 21 Si 0.824 3.176 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.184 1.184 25 C 0.016 3.984 26 C 0.348 3.652 27 O -0.452 6.452 28 O -0.332 6.332 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.203 0.797 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.155 0.845 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 12.900 15.234 1.301 20.004 hybrid contribution -1.191 -1.613 -0.794 2.156 sum 11.708 13.621 0.508 17.969 Atomic orbital electron populations 1.20590 0.88713 1.02385 1.03330 1.21203 0.97145 0.86845 0.92977 1.67420 1.10061 1.27967 1.14602 1.20379 0.88613 0.94196 0.93916 1.18641 0.93944 0.89980 1.04717 1.21555 0.92057 1.00131 0.98135 1.21465 1.01596 0.91463 0.99633 1.21693 0.93658 0.99918 0.97274 1.21401 0.95690 0.97423 1.00533 1.21426 1.00446 0.92323 0.97709 1.22308 1.03135 0.90476 1.01652 1.21954 0.91630 1.00507 0.93923 1.20950 0.96091 0.94347 1.06895 1.18162 0.84961 0.83772 0.84771 1.90600 1.41894 1.78331 1.38891 1.43494 1.33282 1.17529 1.20379 1.19827 1.25671 0.98836 1.00512 0.89562 1.25984 0.97594 1.02624 0.93583 1.69499 1.40769 1.39813 1.04110 0.84756 0.77869 0.76982 0.78004 1.19734 1.20935 1.18396 1.21255 0.89952 1.03068 0.84077 1.23595 0.85765 0.71485 0.84315 1.90570 1.18380 1.53474 1.82796 1.84437 1.45763 1.75760 1.27191 0.89644 0.89432 0.93337 0.83250 0.82567 0.83048 0.84056 0.86430 0.79747 0.81859 0.91175 0.87675 0.84532 0.73219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.75 9.54 71.23 0.68 -3.07 16 2 C 0.16 6.38 6.82 42.96 0.29 6.67 16 3 N -0.49 -17.69 9.31 -171.98 -1.60 -19.30 16 4 C 0.17 4.98 6.73 41.97 0.28 5.27 16 5 C -0.07 -1.77 5.88 -20.05 -0.12 -1.89 16 6 C -0.10 -1.75 9.42 22.50 0.21 -1.54 16 7 C -0.12 -1.67 10.03 22.24 0.22 -1.45 16 8 C -0.11 -1.47 10.04 22.32 0.22 -1.24 16 9 C -0.13 -2.33 10.03 22.23 0.22 -2.11 16 10 C -0.10 -2.40 9.57 22.50 0.22 -2.18 16 11 C -0.16 -4.06 9.44 22.53 0.21 -3.85 16 12 C -0.05 -1.73 7.68 22.71 0.17 -1.56 16 13 C -0.18 -7.39 4.97 -19.96 -0.10 -7.49 16 14 C 0.49 25.07 5.84 86.71 0.51 25.58 16 15 O -0.61 -35.20 15.95 -4.07 -0.06 -35.26 16 16 N -0.43 -22.05 2.18 -643.18 -1.40 -23.45 16 17 C -0.32 -17.88 9.30 84.11 0.78 -17.10 16 18 H 0.09 5.12 7.22 -2.91 -0.02 5.10 16 19 C 0.00 0.07 5.26 84.96 0.45 0.52 16 20 N -0.90 -45.07 7.76 21.68 0.17 -44.90 16 21 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 C 0.14 6.22 5.17 85.63 0.44 6.66 16 26 C 0.51 23.15 6.03 71.24 0.43 23.58 16 27 O -0.56 -30.46 16.59 21.94 0.36 -30.09 16 28 O -0.52 -19.00 13.42 -51.41 -0.69 -19.69 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.05 2.30 6.71 -2.39 -0.02 2.28 16 32 H 0.15 1.83 6.17 -2.91 -0.02 1.81 16 33 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.12 3.12 7.53 -2.91 -0.02 3.10 16 37 H 0.19 2.96 6.17 -2.91 -0.02 2.94 16 38 H 0.16 4.40 7.39 -2.91 -0.02 4.38 16 39 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 40 H 0.11 3.84 4.21 -2.38 -0.01 3.83 16 41 H 0.14 6.14 6.30 -2.39 -0.02 6.13 16 42 H 0.41 11.60 9.10 -74.06 -0.67 10.93 16 Total: -1.00 -76.40 357.40 4.36 -72.04 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.43 Total: 31.48 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 5.13 Total: 24.79 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -2.83 Total: -87.65 kcal Atomic # 8 Polarization: -84.65 SS G_CDS: -0.39 Total: -85.04 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -76.40 4.36 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738831409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds