Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48495 * 109.47147 * 269.99736 * 3 2 1 5 5 H 1.48500 * 109.47015 * 30.00185 * 3 2 1 6 6 H 1.48509 * 109.47191 * 149.99708 * 3 2 1 7 7 C 1.37879 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99414 * 275.78262 * 10 9 7 12 12 C 1.50702 * 109.47188 * 270.00132 * 11 10 9 13 13 C 1.38224 * 119.61783 * 94.73141 * 12 11 10 14 14 C 1.38632 * 119.16099 * 179.75129 * 13 12 11 15 15 C 1.38673 * 118.41668 * 0.51744 * 14 13 12 16 16 C 1.38172 * 119.16722 * 359.72207 * 15 14 13 17 17 N 1.31861 * 119.61637 * 275.00231 * 12 11 10 18 18 C 1.34775 * 120.00406 * 95.78663 * 10 9 7 19 19 O 1.21545 * 119.99934 * 185.08884 * 18 10 9 20 20 C 1.47855 * 119.99704 * 5.09040 * 18 10 9 21 21 C 1.39720 * 120.07229 * 311.47814 * 20 18 10 22 22 C 1.38064 * 120.15865 * 180.27992 * 21 20 18 23 23 C 1.38086 * 120.29725 * 359.97438 * 22 21 20 24 24 C 1.39719 * 120.14525 * 0.02562 * 23 22 21 25 25 C 1.47735 * 120.07924 * 180.02562 * 24 23 22 26 26 O 1.21469 * 120.00187 * 179.97438 * 25 24 23 27 27 O 1.34707 * 120.00114 * 359.97438 * 25 24 23 28 28 C 1.39285 * 120.07590 * 131.75637 * 20 18 10 29 29 H 0.96999 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47093 * 59.99512 * 9 7 2 31 31 H 1.08999 * 109.47057 * 299.99380 * 9 7 2 32 32 H 1.08996 * 109.47563 * 30.00308 * 11 10 9 33 33 H 1.08999 * 109.46772 * 150.00776 * 11 10 9 34 34 H 1.08001 * 120.41874 * 359.97438 * 13 12 11 35 35 H 1.08001 * 120.79121 * 180.25813 * 14 13 12 36 36 H 1.08009 * 120.41377 * 179.70835 * 15 14 13 37 37 H 1.08001 * 119.62177 * 180.02562 * 16 15 14 38 38 H 1.08000 * 119.91655 * 0.25293 * 21 20 18 39 39 H 1.07994 * 119.85109 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.92583 * 179.97438 * 23 22 21 41 41 H 0.96703 * 117.00175 * 179.97438 * 27 25 24 42 42 H 1.08004 * 120.13990 * 359.69791 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7762 -4.0863 -1.2618 12 6 1.8983 -5.1673 -1.8379 13 6 0.9337 -4.8386 -2.7718 14 6 0.1349 -5.8413 -3.2994 15 6 0.3297 -7.1413 -2.8577 16 6 1.3105 -7.3932 -1.9176 17 7 2.0556 -6.4149 -1.4411 18 6 2.5516 -4.2014 1.1617 19 8 3.4096 -5.0622 1.1731 20 6 1.8902 -3.8000 2.4217 21 6 1.7651 -2.4469 2.7466 22 6 1.1529 -2.0703 3.9254 23 6 0.6599 -3.0267 4.7908 24 6 0.7783 -4.3834 4.4785 25 6 0.2498 -5.4054 5.4052 26 8 0.3531 -6.5845 5.1320 27 8 -0.3466 -5.0298 6.5531 28 6 1.3957 -4.7702 3.2902 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5568 0.8903 32 1 2.8401 -3.2566 -1.9658 33 1 3.7737 -4.4866 -1.0804 34 1 0.8065 -3.8141 -3.0892 35 1 -0.6240 -5.6147 -4.0337 36 1 -0.2777 -7.9467 -3.2437 37 1 1.4688 -8.4030 -1.5688 38 1 2.1485 -1.6938 2.0741 39 1 1.0592 -1.0230 4.1717 40 1 0.1825 -2.7254 5.7116 41 1 -0.6769 -5.7344 7.1272 42 1 1.4895 -5.8175 3.0436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739075499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -57.090101 kcal Electronic energy + Delta-G solvation = -29033.674729 eV Core-core repulsion = 24943.879588 eV Total energy + Delta-G solvation = -4089.795141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39281 -40.03205 -39.27301 -37.58574 -36.03316 -35.25337 -33.05423 -32.22188 -31.80627 -30.89497 -30.67258 -27.74085 -26.38504 -24.45667 -23.53785 -23.30180 -22.74329 -21.60734 -21.06548 -19.22776 -17.80063 -17.24214 -16.96850 -16.42668 -16.09755 -15.92177 -15.56068 -15.53915 -15.44878 -15.28488 -14.62468 -14.54529 -14.01497 -13.76045 -13.32221 -13.22087 -13.10781 -12.76600 -12.72876 -12.40202 -12.22666 -11.95556 -11.56527 -11.52829 -11.38871 -11.29695 -11.05041 -11.00945 -10.80162 -10.47397 -10.29482 -9.93636 -9.66246 -9.27843 -9.14736 -8.79703 -8.77596 -8.72672 -8.49997 -7.85442 -6.33838 -4.43168 0.93706 1.28792 1.43920 1.51374 2.68011 3.02030 3.12720 3.21707 3.23875 3.40475 3.70085 4.12518 4.17859 4.28615 4.60111 4.95123 4.96118 5.00571 5.03765 5.13045 5.25176 5.26459 5.35242 5.41658 5.63587 5.74638 5.77563 5.83037 5.98773 6.13622 6.17555 6.21981 6.34697 6.37893 6.42920 6.48302 6.61315 6.75588 6.80264 6.91483 7.08339 7.15622 7.40680 7.60390 7.88646 7.93702 8.18991 8.31968 8.63998 8.90385 9.24716 10.71310 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006618 B = 0.005534 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4229.981815 B = 5058.110640 C = 8332.998761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.229 3.771 10 N -0.585 5.585 11 C 0.168 3.832 12 C 0.118 3.882 13 C -0.154 4.154 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.461 5.461 18 C 0.561 3.439 19 O -0.543 6.543 20 C -0.133 4.133 21 C -0.029 4.029 22 C -0.143 4.143 23 C -0.048 4.048 24 C -0.154 4.154 25 C 0.532 3.468 26 O -0.518 6.518 27 O -0.514 6.514 28 C -0.010 4.010 29 H 0.268 0.732 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.410 0.590 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -6.038 2.044 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.110 3.890 10 N -0.316 5.316 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.175 4.175 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.170 5.170 18 C 0.349 3.651 19 O -0.421 6.421 20 C -0.136 4.136 21 C -0.046 4.046 22 C -0.161 4.161 23 C -0.066 4.066 24 C -0.156 4.156 25 C 0.377 3.623 26 O -0.408 6.408 27 O -0.325 6.325 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.194 0.806 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.268 0.732 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.339 -6.536 2.330 7.067 hybrid contribution -0.876 0.696 -0.360 1.175 sum -2.215 -5.840 1.970 6.549 Atomic orbital electron populations 1.69931 1.06022 1.27601 1.48116 1.24957 0.94818 0.99242 0.94391 0.86565 0.79998 0.82865 0.78586 1.20363 1.20944 1.19481 1.21477 0.93873 0.90270 1.52894 0.91522 1.19676 0.87742 0.82389 0.99212 1.48026 1.45356 1.34164 1.04030 1.20141 0.95851 0.93308 0.86286 1.21885 0.95065 0.92407 0.92719 1.22118 0.96285 1.00821 0.98250 1.21550 0.97995 0.92814 0.98329 1.22094 1.00364 0.97608 1.00037 1.22763 0.91778 0.98471 0.93482 1.67640 1.25416 1.00211 1.23721 1.18156 0.82333 0.81096 0.83528 1.90738 1.32140 1.32606 1.86637 1.19870 1.03381 0.94077 0.96295 1.22815 0.90423 0.96236 0.95176 1.21172 1.00391 0.99907 0.94648 1.21545 0.94857 0.91349 0.98856 1.18736 1.08441 0.92327 0.96065 1.20929 0.74082 0.87735 0.79553 1.90879 1.55317 1.19536 1.75092 1.84568 1.70775 1.44822 1.32370 1.21143 0.91398 1.00053 0.90323 0.92258 0.94713 0.93562 0.88337 0.88878 0.84397 0.85119 0.85310 0.83234 0.80638 0.84791 0.84775 0.73165 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.01 13.29 55.43 0.74 -21.27 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 18.63 29.54 -169.99 -5.02 13.61 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -12.64 6.85 -34.44 -0.24 -12.87 16 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.23 5.07 4.66 -5.19 -0.02 5.04 16 10 N -0.59 -12.09 2.44 -177.54 -0.43 -12.52 16 11 C 0.17 3.11 5.77 -5.19 -0.03 3.08 16 12 C 0.12 2.08 6.36 -82.58 -0.53 1.56 16 13 C -0.15 -2.36 9.72 -39.44 -0.38 -2.74 16 14 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 15 C -0.18 -2.27 10.11 -39.45 -0.40 -2.67 16 16 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 17 N -0.46 -8.40 10.27 -9.47 -0.10 -8.49 16 18 C 0.56 12.12 7.24 -12.33 -0.09 12.03 16 19 O -0.54 -12.82 16.57 5.33 0.09 -12.73 16 20 C -0.13 -2.64 4.94 -105.02 -0.52 -3.16 16 21 C -0.03 -0.54 7.52 -39.09 -0.29 -0.83 16 22 C -0.14 -2.27 10.02 -39.70 -0.40 -2.67 16 23 C -0.05 -0.70 9.61 -39.08 -0.38 -1.07 16 24 C -0.15 -2.52 5.87 -105.04 -0.62 -3.14 16 25 C 0.53 8.02 8.27 34.61 0.29 8.30 16 26 O -0.52 -9.21 17.13 -19.24 -0.33 -9.54 16 27 O -0.51 -5.63 12.67 -40.51 -0.51 -6.14 16 28 C -0.01 -0.19 9.26 -38.77 -0.36 -0.55 16 29 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.05 1.08 5.40 -51.93 -0.28 0.80 16 32 H 0.10 1.67 7.97 -51.93 -0.41 1.25 16 33 H 0.09 1.78 7.36 -51.93 -0.38 1.40 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.18 3.61 4.74 -52.49 -0.25 3.36 16 39 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.13 1.59 7.60 -52.48 -0.40 1.19 16 41 H 0.41 2.50 9.11 45.56 0.42 2.91 16 42 H 0.14 2.64 7.65 -52.48 -0.40 2.24 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -30.85 370.61 -8.43 -39.28 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.79 Total: 10.61 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -4.66 Total: 1.62 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.21 Total: -42.29 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.75 Total: -28.42 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.85 -8.43 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.808 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds