Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48495 * 109.47147 * 269.99736 * 3 2 1 5 5 H 1.48500 * 109.47015 * 30.00185 * 3 2 1 6 6 H 1.48509 * 109.47191 * 149.99708 * 3 2 1 7 7 C 1.37879 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99414 * 275.78262 * 10 9 7 12 12 C 1.50702 * 109.47188 * 270.00132 * 11 10 9 13 13 C 1.38224 * 119.61783 * 94.73141 * 12 11 10 14 14 C 1.38632 * 119.16099 * 179.75129 * 13 12 11 15 15 C 1.38673 * 118.41668 * 0.51744 * 14 13 12 16 16 C 1.38172 * 119.16722 * 359.72207 * 15 14 13 17 17 N 1.31861 * 119.61637 * 275.00231 * 12 11 10 18 18 C 1.34775 * 120.00406 * 95.78663 * 10 9 7 19 19 O 1.21545 * 119.99934 * 185.08884 * 18 10 9 20 20 C 1.47855 * 119.99704 * 5.09040 * 18 10 9 21 21 C 1.39720 * 120.07229 * 311.47814 * 20 18 10 22 22 C 1.38064 * 120.15865 * 180.27992 * 21 20 18 23 23 C 1.38086 * 120.29725 * 359.97438 * 22 21 20 24 24 C 1.39719 * 120.14525 * 0.02562 * 23 22 21 25 25 C 1.47735 * 120.07924 * 180.02562 * 24 23 22 26 26 O 1.21469 * 120.00187 * 179.97438 * 25 24 23 27 27 O 1.34707 * 120.00114 * 359.97438 * 25 24 23 28 28 C 1.39285 * 120.07590 * 131.75637 * 20 18 10 29 29 H 0.96999 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47093 * 59.99512 * 9 7 2 31 31 H 1.08999 * 109.47057 * 299.99380 * 9 7 2 32 32 H 1.08996 * 109.47563 * 30.00308 * 11 10 9 33 33 H 1.08999 * 109.46772 * 150.00776 * 11 10 9 34 34 H 1.08001 * 120.41874 * 359.97438 * 13 12 11 35 35 H 1.08001 * 120.79121 * 180.25813 * 14 13 12 36 36 H 1.08009 * 120.41377 * 179.70835 * 15 14 13 37 37 H 1.08001 * 119.62177 * 180.02562 * 16 15 14 38 38 H 1.08000 * 119.91655 * 0.25293 * 21 20 18 39 39 H 1.07994 * 119.85109 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.92583 * 179.97438 * 23 22 21 41 41 H 0.96703 * 117.00175 * 179.97438 * 27 25 24 42 42 H 1.08004 * 120.13990 * 359.69791 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7762 -4.0863 -1.2618 12 6 1.8983 -5.1673 -1.8379 13 6 0.9337 -4.8386 -2.7718 14 6 0.1349 -5.8413 -3.2994 15 6 0.3297 -7.1413 -2.8577 16 6 1.3105 -7.3932 -1.9176 17 7 2.0556 -6.4149 -1.4411 18 6 2.5516 -4.2014 1.1617 19 8 3.4096 -5.0622 1.1731 20 6 1.8902 -3.8000 2.4217 21 6 1.7651 -2.4469 2.7466 22 6 1.1529 -2.0703 3.9254 23 6 0.6599 -3.0267 4.7908 24 6 0.7783 -4.3834 4.4785 25 6 0.2498 -5.4054 5.4052 26 8 0.3531 -6.5845 5.1320 27 8 -0.3466 -5.0298 6.5531 28 6 1.3957 -4.7702 3.2902 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5568 0.8903 32 1 2.8401 -3.2566 -1.9658 33 1 3.7737 -4.4866 -1.0804 34 1 0.8065 -3.8141 -3.0892 35 1 -0.6240 -5.6147 -4.0337 36 1 -0.2777 -7.9467 -3.2437 37 1 1.4688 -8.4030 -1.5688 38 1 2.1485 -1.6938 2.0741 39 1 1.0592 -1.0230 4.1717 40 1 0.1825 -2.7254 5.7116 41 1 -0.6769 -5.7344 7.1272 42 1 1.4895 -5.8175 3.0436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -75.587802 kcal Electronic energy + Delta-G solvation = -29034.476849 eV Core-core repulsion = 24943.879588 eV Total energy + Delta-G solvation = -4090.597261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73804 -41.25929 -40.63637 -39.00388 -37.12959 -36.94884 -34.74363 -33.49278 -33.15321 -32.23529 -32.00906 -29.44248 -27.86283 -25.73267 -25.18103 -24.52959 -24.17975 -22.89046 -22.32816 -20.65449 -19.02897 -18.70186 -18.56957 -17.81039 -17.47240 -17.29415 -16.95009 -16.84929 -16.70757 -16.56246 -16.23279 -16.03295 -15.40115 -15.10584 -14.66511 -14.45621 -14.35434 -14.22846 -14.12489 -13.91965 -13.70280 -13.44606 -13.06849 -12.81059 -12.69204 -12.63093 -12.62724 -12.51712 -12.38397 -12.03781 -11.73486 -11.71432 -10.95679 -10.79499 -10.58845 -10.37755 -10.09156 -9.99381 -9.95349 -9.52848 -8.17362 -6.31777 -0.37809 0.03885 0.12136 0.39577 1.39963 1.46384 1.51456 1.58902 1.75243 1.98097 2.24323 2.45629 2.76460 2.97746 3.11721 3.39115 3.55002 3.80391 3.83653 3.98898 4.02563 4.14373 4.18765 4.21471 4.25453 4.42472 4.51220 4.59993 4.77288 4.80222 4.85206 4.86487 4.87029 5.11648 5.20744 5.23265 5.28163 5.37339 5.41254 5.52555 5.65548 5.77524 5.79237 5.81007 6.05565 6.48904 6.79697 6.93980 7.12509 7.20703 7.39801 8.87782 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006618 B = 0.005534 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4229.981815 B = 5058.110640 C = 8332.998761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.038 3.962 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.248 3.752 10 N -0.584 5.584 11 C 0.167 3.833 12 C 0.093 3.907 13 C -0.163 4.163 14 C -0.077 4.077 15 C -0.164 4.164 16 C 0.076 3.924 17 N -0.503 5.503 18 C 0.555 3.445 19 O -0.574 6.574 20 C -0.153 4.153 21 C -0.043 4.043 22 C -0.137 4.137 23 C -0.025 4.025 24 C -0.156 4.156 25 C 0.542 3.458 26 O -0.551 6.551 27 O -0.494 6.494 28 C -0.023 4.023 29 H 0.269 0.731 30 H 0.021 0.979 31 H 0.035 0.965 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.435 0.565 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -5.574 2.908 7.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.313 5.313 11 C 0.044 3.956 12 C -0.046 4.046 13 C -0.184 4.184 14 C -0.103 4.103 15 C -0.184 4.184 16 C -0.081 4.081 17 N -0.213 5.213 18 C 0.343 3.657 19 O -0.456 6.456 20 C -0.156 4.156 21 C -0.061 4.061 22 C -0.155 4.155 23 C -0.043 4.043 24 C -0.157 4.157 25 C 0.388 3.612 26 O -0.444 6.444 27 O -0.308 6.308 28 C -0.042 4.042 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.173 0.827 39 H 0.179 0.821 40 H 0.193 0.807 41 H 0.298 0.702 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.180 -6.064 3.206 7.560 hybrid contribution -0.375 0.467 -0.579 0.833 sum -3.555 -5.596 2.627 7.131 Atomic orbital electron populations 1.70011 1.07111 1.28304 1.49066 1.25496 0.95332 1.01621 0.93990 0.85689 0.78903 0.79613 0.78326 1.20466 1.20523 1.19359 1.21502 0.93411 0.90847 1.52592 0.92365 1.19352 0.87537 0.82560 0.97798 1.48044 1.44820 1.33710 1.04747 1.20183 0.95514 0.94235 0.85678 1.21646 0.96383 0.92109 0.94415 1.22218 0.96267 1.01834 0.98035 1.21995 0.97734 0.92339 0.98220 1.22518 0.99135 0.98595 0.98140 1.23251 0.92122 0.98647 0.94116 1.67533 1.27380 1.01057 1.25332 1.18556 0.82058 0.80646 0.84401 1.90695 1.33620 1.34049 1.87204 1.19785 1.04859 0.95005 0.95989 1.22628 0.91926 0.95053 0.96488 1.21464 0.99010 1.01615 0.93401 1.21904 0.93007 0.89929 0.99492 1.18913 1.07622 0.93770 0.95405 1.20611 0.73726 0.86638 0.80196 1.90880 1.56686 1.20750 1.76048 1.84490 1.69666 1.45692 1.30967 1.21034 0.92691 0.98925 0.91583 0.92127 0.96140 0.94765 0.87518 0.90490 0.84117 0.81531 0.81144 0.81224 0.82653 0.82142 0.80735 0.70249 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.41 13.29 21.45 0.28 -45.13 16 2 C 0.04 1.80 5.46 84.66 0.46 2.27 16 3 Si 0.95 38.04 29.54 68.60 2.03 40.06 16 4 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.55 -25.84 6.85 25.60 0.18 -25.67 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.25 11.41 4.66 85.63 0.40 11.81 16 10 N -0.58 -25.63 2.44 -833.91 -2.04 -27.66 16 11 C 0.17 6.65 5.77 85.63 0.49 7.14 16 12 C 0.09 3.41 6.36 42.55 0.27 3.68 16 13 C -0.16 -5.01 9.72 22.36 0.22 -4.79 16 14 C -0.08 -1.84 10.18 22.47 0.23 -1.62 16 15 C -0.16 -3.72 10.11 22.36 0.23 -3.49 16 16 C 0.08 2.21 11.18 84.67 0.95 3.15 16 17 N -0.50 -19.08 10.27 -183.89 -1.89 -20.97 16 18 C 0.55 25.55 7.24 86.79 0.63 26.18 16 19 O -0.57 -29.13 16.57 -3.86 -0.06 -29.19 16 20 C -0.15 -6.36 4.94 -20.12 -0.10 -6.45 16 21 C -0.04 -1.63 7.52 22.59 0.17 -1.46 16 22 C -0.14 -4.11 10.02 22.19 0.22 -3.89 16 23 C -0.03 -0.67 9.61 22.59 0.22 -0.45 16 24 C -0.16 -4.91 5.87 -20.13 -0.12 -5.02 16 25 C 0.54 15.35 8.27 70.33 0.58 15.93 16 26 O -0.55 -19.27 17.13 19.94 0.34 -18.93 16 27 O -0.49 -8.98 12.67 -56.17 -0.71 -9.69 16 28 C -0.02 -0.89 9.26 22.80 0.21 -0.68 16 29 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 30 H 0.02 0.99 8.11 -2.39 -0.02 0.97 16 31 H 0.03 1.67 5.40 -2.39 -0.01 1.66 16 32 H 0.11 3.88 7.97 -2.39 -0.02 3.86 16 33 H 0.08 3.23 7.36 -2.39 -0.02 3.21 16 34 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.16 6.58 4.74 -2.91 -0.01 6.57 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 40 H 0.18 3.24 7.60 -2.91 -0.02 3.21 16 41 H 0.44 3.60 9.11 -74.06 -0.67 2.92 16 42 H 0.12 4.90 7.65 -2.91 -0.02 4.88 16 Total: -1.00 -69.95 370.61 3.59 -66.36 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.41 Total: 28.53 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.23 Total: 16.62 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.64 Total: -93.76 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -0.43 Total: -57.81 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Total: -69.95 3.59 -66.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.229 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds