Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99598 * 2 1 4 4 H 1.48509 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47078 * 299.99718 * 3 2 1 6 6 H 1.48495 * 109.47142 * 60.00250 * 3 2 1 7 7 C 1.37876 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99594 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99668 * 79.02098 * 10 9 7 12 12 C 1.50699 * 109.47069 * 90.00571 * 11 10 9 13 13 C 1.38230 * 119.61709 * 94.99955 * 12 11 10 14 14 C 1.38632 * 119.16134 * 179.97438 * 13 12 11 15 15 C 1.38673 * 118.41864 * 359.97438 * 14 13 12 16 16 C 1.38188 * 119.16340 * 0.02562 * 15 14 13 17 17 N 1.31852 * 119.62089 * 274.72417 * 12 11 10 18 18 C 1.34774 * 120.00197 * 259.03040 * 10 9 7 19 19 O 1.21521 * 120.00033 * 181.49184 * 18 10 9 20 20 C 1.48050 * 119.99840 * 1.48106 * 18 10 9 21 21 C 1.39559 * 119.99425 * 23.38140 * 20 18 10 22 22 C 1.37814 * 120.00304 * 179.72283 * 21 20 18 23 23 C 1.39594 * 119.99282 * 0.56440 * 22 21 20 24 24 C 1.47933 * 120.00489 * 179.68484 * 23 22 21 25 25 O 1.21440 * 119.99918 * 180.02562 * 24 23 22 26 26 O 1.34691 * 119.99857 * 0.02562 * 24 23 22 27 27 C 1.39601 * 119.99470 * 359.70677 * 23 22 21 28 28 C 1.37821 * 119.99040 * 359.97438 * 27 23 22 29 29 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47369 * 60.00204 * 9 7 2 31 31 H 1.09004 * 109.47425 * 299.99987 * 9 7 2 32 32 H 1.09001 * 109.47403 * 330.00514 * 11 10 9 33 33 H 1.09004 * 109.47366 * 210.00670 * 11 10 9 34 34 H 1.07997 * 120.42218 * 359.95224 * 13 12 11 35 35 H 1.07993 * 120.79440 * 180.02562 * 14 13 12 36 36 H 1.08000 * 120.42174 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.61453 * 180.02562 * 16 15 14 38 38 H 1.08000 * 119.99479 * 359.97438 * 21 20 18 39 39 H 1.08002 * 120.00151 * 180.27192 * 22 21 20 40 40 H 0.96691 * 116.99900 * 180.02562 * 26 24 23 41 41 H 1.07993 * 120.00803 * 179.97438 * 27 23 22 42 42 H 1.08000 * 119.99169 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.8628 -4.0123 1.2450 12 6 2.0289 -5.0558 1.9426 13 6 2.3085 -6.3956 1.7485 14 6 1.5357 -7.3475 2.3954 15 6 0.5062 -6.9144 3.2173 16 6 0.2861 -5.5579 3.3628 17 7 1.0444 -4.6803 2.7352 18 6 2.4723 -4.2692 -1.1464 19 8 3.2413 -5.2101 -1.1413 20 6 1.8308 -3.8442 -2.4112 21 6 1.3609 -2.5375 -2.5504 22 6 0.7689 -2.1401 -3.7298 23 6 0.6287 -3.0480 -4.7808 24 6 -0.0130 -2.6236 -6.0444 25 8 -0.1353 -3.4137 -6.9585 26 8 -0.4616 -1.3609 -6.1809 27 6 1.0937 -4.3566 -4.6393 28 6 1.6916 -4.7518 -3.4621 29 1 -0.4851 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.9733 -3.1428 1.8929 33 1 3.8464 -4.4245 1.0193 34 1 3.1186 -6.6969 1.1010 35 1 1.7312 -8.4013 2.2630 36 1 -0.1157 -7.6281 3.7371 37 1 -0.5135 -5.2125 4.0015 38 1 1.4649 -1.8366 -1.7354 39 1 0.4092 -1.1276 -3.8391 40 1 -0.8740 -1.1304 -7.0245 41 1 0.9850 -5.0593 -5.4521 42 1 2.0518 -5.7641 -3.3527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -33.087315 kcal Electronic energy + Delta-G solvation = -28946.381636 eV Core-core repulsion = 24857.627335 eV Total energy + Delta-G solvation = -4088.754302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46222 -40.07532 -39.41844 -37.58808 -36.02967 -35.51332 -33.18047 -32.24232 -31.91151 -30.94715 -30.50514 -27.77673 -26.68310 -24.71668 -23.36941 -23.00867 -22.55752 -21.78772 -21.06067 -19.18987 -18.01391 -17.20366 -17.01552 -16.76522 -16.41189 -15.92338 -15.72427 -15.53629 -15.29106 -14.71090 -14.43306 -14.40610 -14.22126 -13.74182 -13.47635 -13.23927 -13.12727 -12.93561 -12.78208 -12.48448 -12.20805 -12.07225 -11.57111 -11.56305 -11.49685 -11.29446 -11.04297 -10.96813 -10.59310 -10.36720 -9.94506 -9.83260 -9.68405 -9.35847 -9.17523 -8.83753 -8.80377 -8.74988 -8.34704 -7.91514 -6.35217 -4.45495 0.68676 1.26958 1.48989 1.72504 2.51259 3.08941 3.14744 3.24595 3.27665 3.39539 3.62852 4.16560 4.19384 4.25357 4.57664 4.93695 4.95414 5.01442 5.05055 5.18467 5.23182 5.27258 5.31893 5.36076 5.68092 5.75047 5.77121 5.79309 5.98223 6.12671 6.18597 6.32022 6.34950 6.39177 6.48425 6.53374 6.58843 6.74552 6.87594 6.89449 7.12314 7.28216 7.38138 7.59798 7.83283 7.94432 8.14363 8.29387 8.60669 8.78511 9.22341 10.69043 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004455 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.852292 B = 6283.485115 C = 8644.129948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.071 3.929 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.205 3.795 10 N -0.576 5.576 11 C 0.168 3.832 12 C 0.119 3.881 13 C -0.152 4.152 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.095 3.905 17 N -0.462 5.462 18 C 0.553 3.447 19 O -0.564 6.564 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.073 4.073 23 C -0.119 4.119 24 C 0.530 3.470 25 O -0.523 6.523 26 O -0.508 6.508 27 C -0.083 4.083 28 C -0.083 4.083 29 H 0.269 0.731 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.221 0.779 39 H 0.140 0.860 40 H 0.410 0.590 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -7.462 -1.082 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.086 3.914 10 N -0.304 5.304 11 C 0.044 3.956 12 C -0.020 4.020 13 C -0.172 4.172 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.063 4.063 17 N -0.172 5.172 18 C 0.342 3.658 19 O -0.446 6.446 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.092 4.092 23 C -0.120 4.120 24 C 0.375 3.625 25 O -0.413 6.413 26 O -0.319 6.319 27 C -0.101 4.101 28 C -0.102 4.102 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.236 0.764 39 H 0.158 0.842 40 H 0.268 0.732 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.062 -7.208 -0.802 7.253 hybrid contribution 0.001 0.117 -0.673 0.683 sum -0.061 -7.091 -1.475 7.243 Atomic orbital electron populations 1.69940 1.05993 1.27811 1.47353 1.25002 0.94909 0.99486 0.94071 0.86450 0.80312 0.82907 0.78035 1.19380 1.20502 1.20616 1.21435 0.94151 0.90134 1.52810 0.91319 1.20456 0.88118 0.82244 1.00615 1.48050 1.43529 1.33231 1.05592 1.20185 0.93638 0.96237 0.85523 1.21839 0.93476 0.93463 0.93237 1.22143 1.01333 0.93677 1.00078 1.21548 0.94434 0.99897 0.95096 1.22100 0.99488 0.97543 1.00958 1.22770 0.97399 0.89394 0.96740 1.67596 1.04095 1.39133 1.06333 1.18372 0.81519 0.82089 0.83837 1.90650 1.37784 1.29406 1.86711 1.20264 1.00069 0.95224 0.94520 1.24045 0.91693 0.97545 0.99904 1.21575 0.96542 0.99486 0.91552 1.19252 1.04641 0.95789 0.92357 1.21120 0.74624 0.79197 0.87528 1.90840 1.54823 1.53696 1.41941 1.84622 1.71988 1.31129 1.44120 1.20995 0.97048 0.94265 0.97775 1.21101 0.97524 0.99901 0.91635 0.92064 0.91754 0.93530 0.87960 0.89131 0.84364 0.85267 0.85289 0.83031 0.76354 0.84213 0.73155 0.84723 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.09 13.29 55.43 0.74 -21.35 16 2 C 0.07 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.90 19.04 29.54 -169.99 -5.02 14.02 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.55 -12.97 7.28 -34.44 -0.25 -13.22 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.20 4.61 4.63 -5.19 -0.02 4.58 16 10 N -0.58 -11.69 2.46 -177.47 -0.44 -12.13 16 11 C 0.17 3.07 5.68 -5.20 -0.03 3.04 16 12 C 0.12 2.06 6.36 -82.59 -0.53 1.53 16 13 C -0.15 -2.31 9.72 -39.44 -0.38 -2.69 16 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 15 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.20 10.27 -9.47 -0.10 -8.30 16 18 C 0.55 11.24 7.53 -12.24 -0.09 11.14 16 19 O -0.56 -11.79 16.05 5.35 0.09 -11.70 16 20 C -0.10 -1.87 5.62 -104.89 -0.59 -2.46 16 21 C -0.12 -2.25 7.51 -39.24 -0.29 -2.54 16 22 C -0.07 -1.28 9.60 -39.23 -0.38 -1.66 16 23 C -0.12 -1.94 5.88 -104.91 -0.62 -2.56 16 24 C 0.53 8.00 8.28 34.70 0.29 8.28 16 25 O -0.52 -8.75 17.12 -19.22 -0.33 -9.08 16 26 O -0.51 -6.17 12.67 -40.47 -0.51 -6.69 16 27 C -0.08 -1.30 9.58 -39.23 -0.38 -1.67 16 28 C -0.08 -1.39 9.57 -39.24 -0.38 -1.76 16 29 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.07 1.50 4.20 -51.95 -0.22 1.28 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.10 1.90 8.04 -51.93 -0.42 1.48 16 33 H 0.09 1.54 7.34 -51.93 -0.38 1.16 16 34 H 0.14 2.05 7.94 -52.49 -0.42 1.64 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.22 4.78 2.57 -52.49 -0.13 4.65 16 39 H 0.14 2.34 7.60 -52.49 -0.40 1.94 16 40 H 0.41 2.85 9.11 45.56 0.42 3.26 16 41 H 0.13 1.89 7.64 -52.49 -0.40 1.49 16 42 H 0.14 2.09 7.82 -52.49 -0.41 1.68 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -29.43 367.41 -8.37 -37.80 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.60 Total: 13.15 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.74 Total: -1.27 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.20 Total: -41.78 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.76 Total: -27.47 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.43 -8.37 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.717 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds