Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99598 * 2 1 4 4 H 1.48509 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47078 * 299.99718 * 3 2 1 6 6 H 1.48495 * 109.47142 * 60.00250 * 3 2 1 7 7 C 1.37876 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99594 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99668 * 79.02098 * 10 9 7 12 12 C 1.50699 * 109.47069 * 90.00571 * 11 10 9 13 13 C 1.38230 * 119.61709 * 94.99955 * 12 11 10 14 14 C 1.38632 * 119.16134 * 179.97438 * 13 12 11 15 15 C 1.38673 * 118.41864 * 359.97438 * 14 13 12 16 16 C 1.38188 * 119.16340 * 0.02562 * 15 14 13 17 17 N 1.31852 * 119.62089 * 274.72417 * 12 11 10 18 18 C 1.34774 * 120.00197 * 259.03040 * 10 9 7 19 19 O 1.21521 * 120.00033 * 181.49184 * 18 10 9 20 20 C 1.48050 * 119.99840 * 1.48106 * 18 10 9 21 21 C 1.39559 * 119.99425 * 23.38140 * 20 18 10 22 22 C 1.37814 * 120.00304 * 179.72283 * 21 20 18 23 23 C 1.39594 * 119.99282 * 0.56440 * 22 21 20 24 24 C 1.47933 * 120.00489 * 179.68484 * 23 22 21 25 25 O 1.21440 * 119.99918 * 180.02562 * 24 23 22 26 26 O 1.34691 * 119.99857 * 0.02562 * 24 23 22 27 27 C 1.39601 * 119.99470 * 359.70677 * 23 22 21 28 28 C 1.37821 * 119.99040 * 359.97438 * 27 23 22 29 29 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47369 * 60.00204 * 9 7 2 31 31 H 1.09004 * 109.47425 * 299.99987 * 9 7 2 32 32 H 1.09001 * 109.47403 * 330.00514 * 11 10 9 33 33 H 1.09004 * 109.47366 * 210.00670 * 11 10 9 34 34 H 1.07997 * 120.42218 * 359.95224 * 13 12 11 35 35 H 1.07993 * 120.79440 * 180.02562 * 14 13 12 36 36 H 1.08000 * 120.42174 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.61453 * 180.02562 * 16 15 14 38 38 H 1.08000 * 119.99479 * 359.97438 * 21 20 18 39 39 H 1.08002 * 120.00151 * 180.27192 * 22 21 20 40 40 H 0.96691 * 116.99900 * 180.02562 * 26 24 23 41 41 H 1.07993 * 120.00803 * 179.97438 * 27 23 22 42 42 H 1.08000 * 119.99169 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.8628 -4.0123 1.2450 12 6 2.0289 -5.0558 1.9426 13 6 2.3085 -6.3956 1.7485 14 6 1.5357 -7.3475 2.3954 15 6 0.5062 -6.9144 3.2173 16 6 0.2861 -5.5579 3.3628 17 7 1.0444 -4.6803 2.7352 18 6 2.4723 -4.2692 -1.1464 19 8 3.2413 -5.2101 -1.1413 20 6 1.8308 -3.8442 -2.4112 21 6 1.3609 -2.5375 -2.5504 22 6 0.7689 -2.1401 -3.7298 23 6 0.6287 -3.0480 -4.7808 24 6 -0.0130 -2.6236 -6.0444 25 8 -0.1353 -3.4137 -6.9585 26 8 -0.4616 -1.3609 -6.1809 27 6 1.0937 -4.3566 -4.6393 28 6 1.6916 -4.7518 -3.4621 29 1 -0.4851 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.9733 -3.1428 1.8929 33 1 3.8464 -4.4245 1.0193 34 1 3.1186 -6.6969 1.1010 35 1 1.7312 -8.4013 2.2630 36 1 -0.1157 -7.6281 3.7371 37 1 -0.5135 -5.2125 4.0015 38 1 1.4649 -1.8366 -1.7354 39 1 0.4092 -1.1276 -3.8391 40 1 -0.8740 -1.1304 -7.0245 41 1 0.9850 -5.0593 -5.4521 42 1 2.0518 -5.7641 -3.3527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739076228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -49.925620 kcal Electronic energy + Delta-G solvation = -28947.111800 eV Core-core repulsion = 24857.627335 eV Total energy + Delta-G solvation = -4089.484465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83034 -41.27881 -40.70608 -38.98645 -37.21028 -37.08661 -34.84509 -33.52210 -33.21918 -32.29267 -31.83710 -29.49473 -28.08349 -26.08669 -24.89846 -24.34454 -23.85705 -23.06442 -22.35173 -20.68529 -19.17201 -18.74200 -18.44146 -18.22374 -17.72476 -17.39091 -16.98219 -16.69628 -16.51599 -16.39447 -15.84530 -15.77879 -15.67397 -15.20479 -14.72873 -14.59899 -14.34623 -14.23379 -14.19624 -13.97909 -13.56823 -13.47599 -13.03700 -13.00047 -12.74071 -12.63222 -12.60825 -12.54884 -12.12930 -11.83225 -11.71488 -11.43269 -10.92006 -10.78616 -10.65357 -10.38758 -10.15024 -9.97476 -9.82503 -9.53093 -8.21865 -6.37524 -0.67461 0.13956 0.35782 0.40865 1.19752 1.43717 1.48546 1.57767 1.93184 2.00138 2.16711 2.42384 2.80603 2.98189 3.06990 3.37999 3.58572 3.82007 3.85579 3.97439 4.03707 4.10266 4.20763 4.27330 4.32008 4.40956 4.48701 4.61065 4.78581 4.79027 4.85376 4.89364 5.04509 5.18889 5.24308 5.26256 5.28637 5.33168 5.41909 5.53064 5.60485 5.72461 5.83011 5.83758 5.99179 6.48328 6.76154 6.93877 7.13338 7.14631 7.33882 8.82597 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008362 B = 0.004455 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.852292 B = 6283.485115 C = 8644.129948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.035 3.965 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.225 3.775 10 N -0.578 5.578 11 C 0.168 3.832 12 C 0.093 3.907 13 C -0.161 4.161 14 C -0.079 4.079 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.504 5.504 18 C 0.549 3.451 19 O -0.574 6.574 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.074 4.074 23 C -0.118 4.118 24 C 0.539 3.461 25 O -0.538 6.538 26 O -0.502 6.502 27 C -0.071 4.071 28 C -0.077 4.077 29 H 0.272 0.728 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.197 0.803 39 H 0.144 0.856 40 H 0.435 0.565 41 H 0.158 0.842 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -8.844 -1.953 9.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.105 3.895 10 N -0.306 5.306 11 C 0.045 3.955 12 C -0.044 4.044 13 C -0.181 4.181 14 C -0.105 4.105 15 C -0.184 4.184 16 C -0.079 4.079 17 N -0.214 5.214 18 C 0.338 3.662 19 O -0.456 6.456 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.119 4.119 24 C 0.385 3.615 25 O -0.430 6.430 26 O -0.316 6.316 27 C -0.089 4.089 28 C -0.096 4.096 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.213 0.787 39 H 0.162 0.838 40 H 0.297 0.703 41 H 0.176 0.824 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.587 -8.576 -1.683 8.759 hybrid contribution 0.105 0.492 -0.408 0.648 sum -0.482 -8.084 -2.091 8.364 Atomic orbital electron populations 1.70019 1.07083 1.28501 1.48401 1.25586 0.95479 1.01966 0.93751 0.85601 0.79079 0.79648 0.78029 1.19437 1.19731 1.20701 1.21499 0.93688 0.90946 1.52515 0.92185 1.20076 0.88023 0.82673 0.98754 1.48023 1.43211 1.32810 1.06575 1.20192 0.94285 0.96336 0.84730 1.21602 0.94303 0.93970 0.94574 1.22186 1.01965 0.93297 1.00658 1.21988 0.93500 1.01152 0.93842 1.22525 0.98956 0.97187 0.99689 1.23271 0.97471 0.90435 0.96712 1.67495 1.05149 1.41155 1.07594 1.18614 0.81450 0.81918 0.84170 1.90622 1.38292 1.29783 1.86939 1.20294 1.01158 0.95701 0.94755 1.23709 0.93447 0.97526 1.00232 1.21549 0.96343 1.00035 0.91273 1.19427 1.04044 0.95805 0.92653 1.20758 0.74330 0.79815 0.86605 1.90843 1.55566 1.54386 1.42224 1.84570 1.71592 1.29398 1.46024 1.21244 0.95516 0.94400 0.97742 1.21253 0.97070 1.00056 0.91190 0.91910 0.92180 0.96667 0.89519 0.88520 0.84551 0.81631 0.81097 0.80973 0.78714 0.83778 0.70299 0.82394 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.85 13.29 21.45 0.28 -46.56 16 2 C 0.04 1.75 5.31 84.65 0.45 2.20 16 3 Si 0.95 39.68 29.54 68.60 2.03 41.71 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -27.13 7.28 25.60 0.19 -26.95 16 8 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.22 10.69 4.63 85.63 0.40 11.08 16 10 N -0.58 -24.68 2.46 -833.69 -2.05 -26.73 16 11 C 0.17 6.50 5.68 85.63 0.49 6.99 16 12 C 0.09 3.35 6.36 42.55 0.27 3.62 16 13 C -0.16 -4.83 9.72 22.36 0.22 -4.61 16 14 C -0.08 -1.81 10.18 22.47 0.23 -1.58 16 15 C -0.16 -3.52 10.11 22.36 0.23 -3.29 16 16 C 0.08 2.18 11.18 84.67 0.95 3.12 16 17 N -0.50 -18.42 10.27 -183.88 -1.89 -20.31 16 18 C 0.55 22.92 7.53 86.85 0.65 23.58 16 19 O -0.57 -24.29 16.05 -3.78 -0.06 -24.35 16 20 C -0.12 -4.50 5.62 -20.04 -0.11 -4.61 16 21 C -0.13 -5.28 7.51 22.49 0.17 -5.11 16 22 C -0.07 -2.56 9.60 22.50 0.22 -2.35 16 23 C -0.12 -3.66 5.88 -20.05 -0.12 -3.78 16 24 C 0.54 15.04 8.28 70.39 0.58 15.63 16 25 O -0.54 -16.66 17.12 20.03 0.34 -16.31 16 26 O -0.50 -10.95 12.67 -56.01 -0.71 -11.66 16 27 C -0.07 -2.09 9.58 22.50 0.22 -1.88 16 28 C -0.08 -2.50 9.57 22.49 0.22 -2.28 16 29 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.06 2.95 4.20 -2.41 -0.01 2.94 16 31 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 33 H 0.10 3.49 7.34 -2.38 -0.02 3.47 16 34 H 0.14 4.05 7.94 -2.91 -0.02 4.03 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 38 H 0.20 8.88 2.57 -2.91 -0.01 8.88 16 39 H 0.14 4.78 7.60 -2.91 -0.02 4.76 16 40 H 0.43 4.74 9.11 -74.06 -0.67 4.06 16 41 H 0.16 3.95 7.64 -2.91 -0.02 3.93 16 42 H 0.15 4.39 7.82 -2.91 -0.02 4.37 16 Total: -1.00 -65.03 367.41 3.59 -61.44 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.42 Total: 33.00 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.23 Total: 9.78 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.66 Total: -93.61 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.43 Total: -52.33 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -65.03 3.59 -61.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.516 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds