Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38362 * 120.34775 * 2 1 4 4 N 1.31923 * 121.09343 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.88400 * 359.72489 * 4 3 2 6 6 C 1.39575 * 120.55925 * 0.53498 * 5 4 3 7 7 C 1.47713 * 120.56400 * 179.75370 * 6 5 4 8 8 O 1.21472 * 120.00161 * 179.72718 * 7 6 5 9 9 O 1.34711 * 120.00398 * 359.72141 * 7 6 5 10 10 C 1.45193 * 117.00580 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47461 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99822 * 355.01093 * 11 10 9 13 13 N 1.34779 * 120.00028 * 175.00020 * 11 10 9 14 14 C 1.37141 * 119.99998 * 3.95161 * 13 11 10 15 15 H 1.07999 * 120.00176 * 306.69694 * 14 13 11 16 16 C 1.38884 * 119.99905 * 126.69186 * 14 13 11 17 17 N 1.31430 * 120.00385 * 3.02066 * 16 14 13 18 18 Si 1.86802 * 120.00316 * 183.01788 * 16 14 13 19 19 H 1.48499 * 109.47006 * 60.00114 * 18 16 14 20 20 H 1.48497 * 109.47627 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47040 * 300.00389 * 18 16 14 22 22 C 1.39790 * 120.00131 * 183.67536 * 13 11 10 23 23 C 1.38955 * 120.07477 * 351.37711 * 22 13 11 24 24 C 1.38087 * 119.92172 * 179.72256 * 23 22 13 25 25 C 1.38308 * 120.07462 * 0.54962 * 24 23 22 26 26 C 1.38306 * 120.15637 * 359.72515 * 25 24 23 27 27 C 1.38082 * 120.07714 * 359.97438 * 26 25 24 28 28 C 1.38343 * 120.34313 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47004 * 269.97662 * 1 2 3 30 30 H 1.09003 * 109.47291 * 29.97918 * 1 2 3 31 31 H 1.09001 * 109.47468 * 149.98277 * 1 2 3 32 32 H 1.07997 * 119.45216 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.72152 * 180.28973 * 5 4 3 34 34 H 1.09003 * 109.46786 * 59.99840 * 10 9 7 35 35 H 1.08999 * 109.47273 * 300.00713 * 10 9 7 36 36 H 0.96998 * 120.00289 * 185.00555 * 17 16 14 37 37 H 1.08004 * 120.04408 * 359.97438 * 23 22 13 38 38 H 1.08001 * 119.96277 * 180.29580 * 24 23 22 39 39 H 1.07999 * 119.92584 * 179.70304 * 25 24 23 40 40 H 1.08005 * 119.96059 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.03863 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.86401 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2112 -0.0005 5 6 4.2353 0.1021 0.0043 6 6 3.6058 -1.1436 -0.0010 7 6 4.4022 -2.3876 -0.0010 8 8 3.8437 -3.4663 -0.0007 9 8 5.7479 -2.3260 -0.0016 10 6 6.4657 -3.5881 -0.0010 11 6 7.9490 -3.3224 -0.0023 12 8 8.3614 -2.1857 -0.0950 13 7 8.8174 -4.3481 0.0996 14 6 8.3545 -5.6388 0.1230 15 1 7.5970 -5.9280 0.8364 16 6 8.8597 -6.5740 -0.7709 17 7 9.8233 -6.2379 -1.5991 18 14 8.1698 -8.3098 -0.7961 19 1 6.7191 -8.2613 -1.1094 20 1 8.8741 -9.1075 -1.8319 21 1 8.3683 -8.9407 0.5336 22 6 10.1904 -4.0966 0.1758 23 6 10.6755 -2.8112 -0.0325 24 6 12.0318 -2.5652 0.0491 25 6 12.9082 -3.5985 0.3266 26 6 12.4294 -4.8802 0.5289 27 6 11.0738 -5.1322 0.4548 28 6 2.2059 -1.1939 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6628 2.1274 -0.0004 33 1 5.3138 0.1569 0.0085 34 1 6.1982 -4.1585 -0.8905 35 1 6.1989 -4.1574 0.8894 36 1 10.1263 -6.8676 -2.2718 37 1 9.9921 -2.0046 -0.2540 38 1 12.4091 -1.5654 -0.1079 39 1 13.9689 -3.4043 0.3852 40 1 13.1165 -5.6847 0.7458 41 1 10.7006 -6.1334 0.6125 42 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745508648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -33.861146 kcal Electronic energy + Delta-G solvation = -28279.074895 eV Core-core repulsion = 24190.287038 eV Total energy + Delta-G solvation = -4088.787857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89495 -39.98179 -39.39448 -37.28328 -36.12747 -35.08122 -33.96181 -32.52138 -32.01362 -29.82174 -29.56734 -27.77601 -27.37151 -25.31521 -24.82617 -22.97281 -21.88871 -21.26257 -20.70050 -19.62516 -18.00561 -17.95359 -17.24422 -16.66349 -16.42203 -16.12973 -15.85839 -15.52859 -15.19479 -14.69928 -14.53573 -14.21144 -14.00058 -13.57746 -13.37499 -13.15208 -13.04747 -12.95342 -12.85615 -12.69479 -12.37300 -12.21976 -12.19260 -11.84456 -11.55556 -11.41127 -11.01961 -10.86134 -10.71351 -10.54534 -10.42892 -10.10582 -10.03920 -9.71685 -9.32339 -9.25819 -8.86253 -8.28360 -7.77985 -6.96638 -6.40139 -4.62490 0.33039 0.92012 2.38277 2.49223 2.53095 2.59025 3.01869 3.08541 3.09680 3.55664 3.58830 3.89533 4.10728 4.31581 4.39735 4.58388 4.62610 4.67915 4.71015 4.95508 5.11864 5.21457 5.28016 5.34330 5.49153 5.60114 5.65448 5.78477 5.82475 5.88485 5.89049 6.03292 6.17306 6.31050 6.51287 6.70654 6.73163 6.86525 7.10700 7.17478 7.49770 7.59951 7.60608 7.63728 7.72456 7.79694 7.99837 8.37859 8.73312 9.08315 9.45610 10.39514 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.002928 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.243115 B = 9560.020647 C =11368.818757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.154 4.154 3 C 0.127 3.873 4 N -0.487 5.487 5 C 0.157 3.843 6 C -0.167 4.167 7 C 0.511 3.489 8 O -0.504 6.504 9 O -0.330 6.330 10 C 0.073 3.927 11 C 0.493 3.507 12 O -0.546 6.546 13 N -0.378 5.378 14 C -0.382 4.382 15 H 0.096 0.904 16 C 0.058 3.942 17 N -0.837 5.837 18 Si 0.919 3.081 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.188 3.812 23 C -0.186 4.186 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.124 4.124 27 C -0.086 4.086 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.277 0.723 37 H 0.171 0.829 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 7.378 2.612 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.156 4.156 3 C -0.030 4.030 4 N -0.195 5.195 5 C -0.001 4.001 6 C -0.170 4.170 7 C 0.355 3.645 8 O -0.393 6.393 9 O -0.245 6.245 10 C -0.003 4.003 11 C 0.283 3.717 12 O -0.429 6.429 13 N -0.087 5.087 14 C -0.509 4.509 15 H 0.114 0.886 16 C -0.153 4.153 17 N -0.468 5.468 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.193 1.193 22 C 0.092 3.908 23 C -0.205 4.205 24 C -0.141 4.141 25 C -0.190 4.190 26 C -0.143 4.143 27 C -0.107 4.107 28 C -0.041 4.041 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.195 0.805 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.187 0.813 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.945 8.277 2.422 14.733 hybrid contribution -0.522 -2.246 -0.289 2.324 sum -12.467 6.031 2.133 14.012 Atomic orbital electron populations 1.20721 0.89456 1.03468 1.02899 1.20894 0.98053 0.93550 1.03093 1.23020 0.90152 0.97697 0.92099 1.67847 1.07824 1.30981 1.12826 1.23424 1.01512 0.86056 0.89098 1.20206 0.93849 0.93088 1.09874 1.20839 0.81613 0.88794 0.73284 1.90845 1.72425 1.30269 1.45750 1.86501 1.18301 1.36521 1.83156 1.22662 0.90158 0.82164 1.05337 1.20130 0.87293 0.85083 0.79179 1.90272 1.77842 1.22855 1.51923 1.40835 1.02352 1.05984 1.59566 1.19401 1.26232 0.84544 1.20724 0.88641 1.25634 0.94477 1.00576 0.94611 1.69988 1.22997 1.37288 1.16487 0.86120 0.79600 0.81254 0.78683 1.19170 1.20485 1.19253 1.18105 0.83867 0.93078 0.95758 1.22610 0.96383 0.98262 1.03295 1.20833 0.93535 0.97833 1.01861 1.20775 0.98146 0.93747 1.06291 1.20709 0.95007 0.96012 1.02615 1.20726 0.91713 0.98751 0.99540 1.21640 0.91946 0.99344 0.91150 0.90653 0.90881 0.91000 0.82192 0.80496 0.87672 0.88453 0.91218 0.81264 0.87732 0.88215 0.87826 0.85737 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.03 36.00 0.36 -0.23 16 2 C -0.15 -1.35 5.89 -104.54 -0.62 -1.97 16 3 C 0.13 1.19 10.85 -17.47 -0.19 1.00 16 4 N -0.49 -5.97 10.35 -12.90 -0.13 -6.11 16 5 C 0.16 2.04 10.79 -17.11 -0.18 1.86 16 6 C -0.17 -2.24 5.89 -104.84 -0.62 -2.85 16 7 C 0.51 8.33 7.91 34.60 0.27 8.60 16 8 O -0.50 -9.02 16.21 -19.24 -0.31 -9.34 16 9 O -0.33 -5.99 9.04 -47.19 -0.43 -6.42 16 10 C 0.07 1.43 4.78 36.00 0.17 1.60 16 11 C 0.49 11.39 7.65 -10.99 -0.08 11.31 16 12 O -0.55 -13.30 12.92 -14.05 -0.18 -13.48 16 13 N -0.38 -9.24 2.71 -58.98 -0.16 -9.40 16 14 C -0.38 -9.08 7.53 -14.94 -0.11 -9.20 16 15 H 0.10 2.12 7.43 -52.49 -0.39 1.73 16 16 C 0.06 1.37 4.13 -17.48 -0.07 1.30 16 17 N -0.84 -21.21 10.87 55.49 0.60 -20.61 16 18 Si 0.92 18.32 29.56 -169.99 -5.02 13.29 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C 0.19 4.66 5.69 -83.70 -0.48 4.18 16 23 C -0.19 -4.41 9.03 -39.37 -0.36 -4.76 16 24 C -0.12 -2.54 10.04 -39.61 -0.40 -2.94 16 25 C -0.17 -3.38 10.04 -39.53 -0.40 -3.78 16 26 C -0.12 -2.60 10.04 -39.61 -0.40 -3.00 16 27 C -0.09 -2.04 7.53 -39.37 -0.30 -2.34 16 28 C -0.02 -0.17 9.39 -38.85 -0.36 -0.53 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.18 2.32 7.62 -52.49 -0.40 1.92 16 34 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.10 1.78 7.72 -51.93 -0.40 1.38 16 36 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.17 4.16 4.59 -55.96 -0.26 3.90 16 38 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.12 3.02 5.92 -52.48 -0.31 2.71 16 42 H 0.15 1.49 7.74 -52.49 -0.41 1.08 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -29.51 364.21 -8.58 -38.09 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.68 Total: 10.22 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.75 Total: -1.74 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.31 Total: -36.12 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.92 Total: -29.23 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.51 -8.58 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745508648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.229 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds