Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38362 * 120.34775 * 2 1 4 4 N 1.31923 * 121.09343 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.88400 * 359.72489 * 4 3 2 6 6 C 1.39575 * 120.55925 * 0.53498 * 5 4 3 7 7 C 1.47713 * 120.56400 * 179.75370 * 6 5 4 8 8 O 1.21472 * 120.00161 * 179.72718 * 7 6 5 9 9 O 1.34711 * 120.00398 * 359.72141 * 7 6 5 10 10 C 1.45193 * 117.00580 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47461 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99822 * 355.01093 * 11 10 9 13 13 N 1.34779 * 120.00028 * 175.00020 * 11 10 9 14 14 C 1.37141 * 119.99998 * 3.95161 * 13 11 10 15 15 H 1.07999 * 120.00176 * 306.69694 * 14 13 11 16 16 C 1.38884 * 119.99905 * 126.69186 * 14 13 11 17 17 N 1.31430 * 120.00385 * 3.02066 * 16 14 13 18 18 Si 1.86802 * 120.00316 * 183.01788 * 16 14 13 19 19 H 1.48499 * 109.47006 * 60.00114 * 18 16 14 20 20 H 1.48497 * 109.47627 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47040 * 300.00389 * 18 16 14 22 22 C 1.39790 * 120.00131 * 183.67536 * 13 11 10 23 23 C 1.38955 * 120.07477 * 351.37711 * 22 13 11 24 24 C 1.38087 * 119.92172 * 179.72256 * 23 22 13 25 25 C 1.38308 * 120.07462 * 0.54962 * 24 23 22 26 26 C 1.38306 * 120.15637 * 359.72515 * 25 24 23 27 27 C 1.38082 * 120.07714 * 359.97438 * 26 25 24 28 28 C 1.38343 * 120.34313 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47004 * 269.97662 * 1 2 3 30 30 H 1.09003 * 109.47291 * 29.97918 * 1 2 3 31 31 H 1.09001 * 109.47468 * 149.98277 * 1 2 3 32 32 H 1.07997 * 119.45216 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.72152 * 180.28973 * 5 4 3 34 34 H 1.09003 * 109.46786 * 59.99840 * 10 9 7 35 35 H 1.08999 * 109.47273 * 300.00713 * 10 9 7 36 36 H 0.96998 * 120.00289 * 185.00555 * 17 16 14 37 37 H 1.08004 * 120.04408 * 359.97438 * 23 22 13 38 38 H 1.08001 * 119.96277 * 180.29580 * 24 23 22 39 39 H 1.07999 * 119.92584 * 179.70304 * 25 24 23 40 40 H 1.08005 * 119.96059 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.03863 * 179.97438 * 27 26 25 42 42 H 1.07996 * 120.86401 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2112 -0.0005 5 6 4.2353 0.1021 0.0043 6 6 3.6058 -1.1436 -0.0010 7 6 4.4022 -2.3876 -0.0010 8 8 3.8437 -3.4663 -0.0007 9 8 5.7479 -2.3260 -0.0016 10 6 6.4657 -3.5881 -0.0010 11 6 7.9490 -3.3224 -0.0023 12 8 8.3614 -2.1857 -0.0950 13 7 8.8174 -4.3481 0.0996 14 6 8.3545 -5.6388 0.1230 15 1 7.5970 -5.9280 0.8364 16 6 8.8597 -6.5740 -0.7709 17 7 9.8233 -6.2379 -1.5991 18 14 8.1698 -8.3098 -0.7961 19 1 6.7191 -8.2613 -1.1094 20 1 8.8741 -9.1075 -1.8319 21 1 8.3683 -8.9407 0.5336 22 6 10.1904 -4.0966 0.1758 23 6 10.6755 -2.8112 -0.0325 24 6 12.0318 -2.5652 0.0491 25 6 12.9082 -3.5985 0.3266 26 6 12.4294 -4.8802 0.5289 27 6 11.0738 -5.1322 0.4548 28 6 2.2059 -1.1939 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6628 2.1274 -0.0004 33 1 5.3138 0.1569 0.0085 34 1 6.1982 -4.1585 -0.8905 35 1 6.1989 -4.1574 0.8894 36 1 10.1263 -6.8676 -2.2718 37 1 9.9921 -2.0046 -0.2540 38 1 12.4091 -1.5654 -0.1079 39 1 13.9689 -3.4043 0.3852 40 1 13.1165 -5.6847 0.7458 41 1 10.7006 -6.1334 0.6125 42 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745508648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -48.204496 kcal Electronic energy + Delta-G solvation = -28279.696870 eV Core-core repulsion = 24190.287038 eV Total energy + Delta-G solvation = -4089.409832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08633 -41.50838 -40.70378 -38.96951 -37.58062 -36.87511 -34.70847 -33.84864 -33.49776 -31.49266 -31.26090 -29.15485 -28.22490 -27.10878 -25.94437 -23.86545 -23.53690 -22.94225 -21.93236 -21.40133 -19.70831 -19.18858 -18.27394 -18.00294 -17.82730 -17.52635 -17.28861 -17.07804 -16.84763 -16.22871 -16.01613 -15.35308 -15.29082 -14.80160 -14.68188 -14.49389 -14.32803 -14.25928 -14.00770 -13.86809 -13.63591 -13.55017 -13.46426 -13.26985 -13.12249 -12.85000 -12.67805 -12.48799 -12.16653 -12.00401 -11.94476 -11.72963 -11.10662 -11.03020 -10.63545 -10.62359 -10.07726 -10.05508 -9.50691 -8.76872 -8.19947 -6.48986 -0.63373 0.07079 0.65351 0.85001 1.16272 1.31015 1.42707 1.44487 1.53627 1.84235 2.23488 2.64812 2.68696 2.88606 3.26312 3.36674 3.55540 3.70553 3.72018 3.79866 3.83453 4.05634 4.11748 4.19789 4.34459 4.38437 4.50128 4.61065 4.71309 4.85633 4.91889 4.95319 5.00454 5.08628 5.12695 5.17554 5.23274 5.31327 5.42873 5.53780 5.78888 5.86230 5.89800 6.01299 6.20757 6.41860 6.60371 6.75551 6.90667 7.27715 7.64709 8.59414 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.002928 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.243115 B = 9560.020647 C =11368.818757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.139 4.139 3 C 0.132 3.868 4 N -0.506 5.506 5 C 0.146 3.854 6 C -0.185 4.185 7 C 0.513 3.487 8 O -0.524 6.524 9 O -0.340 6.340 10 C 0.084 3.916 11 C 0.481 3.519 12 O -0.567 6.567 13 N -0.390 5.390 14 C -0.394 4.394 15 H 0.105 0.895 16 C 0.022 3.978 17 N -0.870 5.870 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.259 1.259 22 C 0.157 3.843 23 C -0.212 4.212 24 C -0.122 4.122 25 C -0.162 4.162 26 C -0.125 4.125 27 C -0.104 4.104 28 C -0.020 4.020 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.200 0.800 33 H 0.165 0.835 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.276 0.724 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 7.787 2.965 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C -0.025 4.025 4 N -0.214 5.214 5 C -0.011 4.011 6 C -0.188 4.188 7 C 0.358 3.642 8 O -0.414 6.414 9 O -0.255 6.255 10 C 0.008 3.992 11 C 0.272 3.728 12 O -0.452 6.452 13 N -0.099 5.099 14 C -0.520 4.520 15 H 0.123 0.877 16 C -0.185 4.185 17 N -0.502 5.502 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.184 1.184 22 C 0.061 3.939 23 C -0.231 4.231 24 C -0.140 4.140 25 C -0.181 4.181 26 C -0.143 4.143 27 C -0.125 4.125 28 C -0.045 4.045 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.216 0.784 33 H 0.182 0.818 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.155 8.693 2.789 16.012 hybrid contribution -0.175 -2.231 -0.376 2.269 sum -13.330 6.462 2.413 15.009 Atomic orbital electron populations 1.20840 0.86440 1.04903 1.04181 1.21283 0.99948 0.92254 1.00595 1.23716 0.89229 0.99575 0.89961 1.67872 1.09473 1.30435 1.13640 1.23237 1.01270 0.86452 0.90107 1.20110 0.94643 0.91580 1.12480 1.21373 0.80765 0.89761 0.72267 1.90817 1.72386 1.31212 1.47034 1.86517 1.19636 1.35737 1.83593 1.22410 0.88267 0.82856 1.05647 1.20661 0.88634 0.84730 0.78776 1.90251 1.78549 1.23498 1.52866 1.41076 1.02721 1.06474 1.59655 1.19755 1.26400 0.84656 1.21168 0.87710 1.26389 0.94344 1.03892 0.93890 1.70120 1.24347 1.38467 1.17267 0.85132 0.78852 0.76665 0.78769 1.18725 1.20653 1.18378 1.18468 0.84395 0.93952 0.97055 1.22640 0.97834 0.97694 1.04974 1.21200 0.92464 0.99770 1.00597 1.21204 1.00056 0.92715 1.04106 1.21099 0.94297 0.97609 1.01324 1.20749 0.93006 0.97836 1.00920 1.21862 0.90847 1.00817 0.91009 0.89242 0.88651 0.90447 0.78376 0.81808 0.87864 0.87376 0.91436 0.82758 0.84800 0.84072 0.84913 0.87176 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.03 71.24 0.71 -0.04 16 2 C -0.14 -2.09 5.89 -19.81 -0.12 -2.20 16 3 C 0.13 2.13 10.85 84.71 0.92 3.05 16 4 N -0.51 -12.07 10.35 -194.71 -2.01 -14.08 16 5 C 0.15 3.95 10.79 85.04 0.92 4.87 16 6 C -0.18 -5.06 5.89 -20.00 -0.12 -5.17 16 7 C 0.51 17.40 7.91 70.33 0.56 17.95 16 8 O -0.52 -19.25 16.21 19.93 0.32 -18.93 16 9 O -0.34 -13.04 9.04 -49.83 -0.45 -13.49 16 10 C 0.08 3.47 4.78 71.23 0.34 3.81 16 11 C 0.48 23.40 7.65 87.66 0.67 24.07 16 12 O -0.57 -29.26 12.92 15.73 0.20 -29.06 16 13 N -0.39 -19.87 2.71 -458.91 -1.24 -21.12 16 14 C -0.39 -19.23 7.53 84.02 0.63 -18.60 16 15 H 0.11 4.76 7.43 -2.91 -0.02 4.74 16 16 C 0.02 1.07 4.13 84.91 0.35 1.42 16 17 N -0.87 -45.17 10.87 21.65 0.24 -44.94 16 18 Si 0.98 37.79 29.56 68.60 2.03 39.82 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 C 0.16 8.05 5.69 38.22 0.22 8.27 16 23 C -0.21 -10.32 9.03 22.41 0.20 -10.12 16 24 C -0.12 -4.96 10.04 22.25 0.22 -4.74 16 25 C -0.16 -6.05 10.04 22.30 0.22 -5.83 16 26 C -0.12 -5.05 10.04 22.25 0.22 -4.82 16 27 C -0.10 -4.99 7.53 22.40 0.17 -4.82 16 28 C -0.02 -0.42 9.39 22.74 0.21 -0.20 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.31 8.09 -2.39 -0.02 0.29 16 31 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 32 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.16 4.69 7.62 -2.91 -0.02 4.67 16 34 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 35 H 0.11 4.12 7.72 -2.39 -0.02 4.10 16 36 H 0.28 13.63 8.32 -92.71 -0.77 12.86 16 37 H 0.16 7.98 4.59 -57.92 -0.27 7.71 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.11 5.49 5.92 -2.91 -0.02 5.47 16 42 H 0.16 2.98 7.74 -2.91 -0.02 2.96 16 Total: -1.00 -66.58 364.21 6.23 -60.34 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.81 Total: 34.56 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.34 Total: 6.90 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -3.02 Total: -80.14 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: 0.08 Total: -61.47 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -66.58 6.23 -60.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745508648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.137 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds