Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99907 * 3 2 1 5 5 H 1.48502 * 109.46990 * 29.99654 * 3 2 1 6 6 H 1.48496 * 109.47498 * 149.99658 * 3 2 1 7 7 C 1.38638 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00024 * 0.02562 * 7 2 1 9 9 O 1.34800 * 120.00113 * 180.02562 * 7 2 1 10 10 C 1.35785 * 117.00242 * 174.97828 * 9 7 2 11 11 C 1.38735 * 120.08407 * 5.19395 * 10 9 7 12 12 C 1.38342 * 119.97510 * 179.97438 * 11 10 9 13 13 F 1.35103 * 119.92553 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.15392 * 0.02562 * 12 11 10 15 15 C 1.38203 * 120.17243 * 359.74301 * 14 12 11 16 16 C 1.38689 * 120.01909 * 0.50764 * 15 14 12 17 17 N 1.40140 * 120.07530 * 179.76555 * 16 15 14 18 18 C 1.34781 * 119.99742 * 335.23692 * 17 16 15 19 19 O 1.21591 * 120.00061 * 354.32265 * 18 17 16 20 20 N 1.34776 * 119.99636 * 174.32915 * 18 17 16 21 21 C 1.46498 * 119.99846 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47133 * 180.02562 * 21 20 18 23 23 C 1.53001 * 113.56389 * 314.27217 * 22 21 20 24 24 O 1.42901 * 109.46902 * 175.38991 * 23 22 21 25 25 C 1.53366 * 114.56616 * 179.97438 * 22 21 20 26 26 O 1.43346 * 88.44813 * 220.42202 * 25 22 21 27 27 C 1.43345 * 88.32204 * 28.14887 * 26 25 22 28 28 H 0.96994 * 120.00122 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.01225 * 359.96144 * 11 10 9 30 30 H 1.08005 * 119.91858 * 180.02562 * 14 12 11 31 31 H 1.07998 * 119.98770 * 180.25571 * 15 14 12 32 32 H 0.97000 * 120.00249 * 155.23132 * 17 16 15 33 33 H 0.97003 * 120.00487 * 359.97438 * 20 18 17 34 34 H 1.09000 * 109.47420 * 59.99855 * 21 20 18 35 35 H 1.09007 * 109.47208 * 299.99666 * 21 20 18 36 36 H 1.08994 * 109.47304 * 295.39151 * 23 22 21 37 37 H 1.08998 * 109.47045 * 55.39496 * 23 22 21 38 38 H 0.96703 * 113.99893 * 179.97438 * 24 23 22 39 39 H 1.09001 * 113.39255 * 105.52322 * 25 22 21 40 40 H 1.09004 * 113.43733 * 335.32467 * 25 22 21 41 41 H 1.09002 * 113.38803 * 86.74930 * 27 26 25 42 42 H 1.09000 * 113.39641 * 216.94739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3569 -1.2007 0.0011 10 6 3.9734 -2.4058 0.1075 11 6 3.2239 -3.5733 0.1009 12 6 3.8543 -4.8000 0.2089 13 9 3.1235 -5.9362 0.2030 14 6 5.2333 -4.8659 0.3243 15 6 5.9864 -3.7071 0.3267 16 6 5.3614 -2.4733 0.2240 17 7 6.1235 -1.2972 0.2313 18 6 7.3380 -1.2849 0.8156 19 8 7.7292 -2.2613 1.4255 20 7 8.1188 -0.1901 0.7239 21 6 9.4386 -0.1764 1.3594 22 6 10.1125 1.1737 1.1066 23 6 10.0082 1.6472 -0.3446 24 8 10.5680 2.9569 -0.4596 25 6 11.5087 1.3153 1.7251 26 8 11.1685 2.6593 2.0894 27 6 9.7962 2.2500 2.1524 28 1 -0.4850 0.8400 0.0004 29 1 2.1486 -3.5245 0.0118 30 1 5.7216 -5.8257 0.4080 31 1 7.0615 -3.7622 0.4126 32 1 5.7770 -0.4922 -0.1843 33 1 7.8068 0.5888 0.2371 34 1 10.0524 -0.9735 0.9397 35 1 9.3268 -0.3309 2.4327 36 1 10.5545 0.9604 -0.9910 37 1 8.9604 1.6724 -0.6441 38 1 10.5362 3.3210 -1.3550 39 1 12.3143 1.2560 0.9932 40 1 11.6712 0.6624 2.5827 41 1 9.5106 1.8410 3.1216 42 1 9.1011 3.0098 1.7950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747354002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -114.228024 kcal Electronic energy + Delta-G solvation = -29456.023201 eV Core-core repulsion = 24932.981150 eV Total energy + Delta-G solvation = -4523.042052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.29267 -41.55367 -40.41453 -38.98315 -36.87513 -36.63001 -35.15871 -34.29274 -32.53978 -31.52513 -29.60685 -28.49520 -26.60587 -26.47130 -25.56379 -25.27774 -22.59465 -21.67898 -20.77412 -19.49840 -18.69039 -18.39986 -18.04079 -17.51013 -17.00079 -16.56537 -16.29290 -15.84882 -15.58213 -15.41720 -15.15652 -15.03123 -15.00633 -14.92490 -14.23430 -14.18382 -13.88392 -13.84443 -13.50007 -13.29723 -13.08950 -12.63112 -12.49455 -12.34977 -11.91220 -11.82105 -11.56657 -11.35969 -11.14310 -11.02751 -10.85182 -10.51423 -10.29114 -10.07876 -9.96747 -9.83164 -9.61360 -9.25421 -9.04152 -7.99686 -7.22522 -6.57390 -4.24763 1.72638 1.98596 2.57240 3.06285 3.09625 3.18066 3.20669 3.48104 3.55470 3.80340 4.04743 4.18753 4.21062 4.24062 4.49962 4.65116 4.83131 4.91747 4.94297 4.97165 4.99837 5.14240 5.19277 5.28669 5.41257 5.45874 5.53868 5.66355 5.66914 5.78548 5.86176 6.00609 6.22068 6.39943 6.55606 6.78310 6.84613 6.92424 7.02717 7.23708 7.42722 7.61723 7.84241 7.98054 8.57627 8.75457 9.29952 10.49935 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003384 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.105978 B = 8272.015046 C =10591.165741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.161 3.839 11 C -0.243 4.243 12 C 0.124 3.876 13 F -0.149 7.149 14 C -0.217 4.217 15 C -0.063 4.063 16 C 0.083 3.917 17 N -0.666 5.666 18 C 0.704 3.296 19 O -0.578 6.578 20 N -0.748 5.748 21 C 0.158 3.842 22 C -0.151 4.151 23 C 0.103 3.897 24 O -0.556 6.556 25 C 0.052 3.948 26 O -0.350 6.350 27 C 0.047 3.953 28 H 0.282 0.718 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.409 0.591 33 H 0.396 0.604 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.380 0.620 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.371 3.096 -1.370 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.106 3.894 11 C -0.263 4.263 12 C 0.104 3.896 13 F -0.128 7.128 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.012 4.012 17 N -0.312 5.312 18 C 0.405 3.595 19 O -0.455 6.455 20 N -0.406 5.406 21 C 0.033 3.967 22 C -0.152 4.152 23 C 0.025 3.975 24 O -0.361 6.361 25 C -0.026 4.026 26 O -0.268 6.268 27 C -0.030 4.030 28 H 0.092 0.908 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.168 0.832 32 H 0.244 0.756 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.226 0.774 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.856 2.750 -0.142 20.046 hybrid contribution -0.747 1.144 -1.046 1.721 sum 19.109 3.895 -1.189 19.538 Atomic orbital electron populations 1.69640 1.05566 1.28714 1.46964 1.24466 0.95038 0.98776 0.95579 0.86194 0.80304 0.81576 0.78827 1.19768 1.20609 1.18523 1.20752 0.76344 0.96868 1.52618 0.87356 1.83479 1.23142 1.24729 1.80318 1.18384 0.89173 0.85925 0.95904 1.20957 1.02085 0.90029 1.13262 1.17469 0.89097 0.81334 1.01658 1.91427 1.77881 1.49418 1.94059 1.20565 0.91535 0.99055 1.12544 1.20799 1.00835 0.88879 0.97837 1.16689 0.86631 0.85735 1.12131 1.42239 1.16508 1.13422 1.59022 1.15832 0.80640 0.83388 0.79668 1.90875 1.74013 1.34032 1.46623 1.45142 1.18355 1.17024 1.60060 1.21064 0.82100 0.94797 0.98712 1.23574 0.98927 0.96233 0.96471 1.21632 0.97426 0.85029 0.93453 1.86626 1.84001 1.31045 1.34457 1.23529 0.95580 0.84955 0.98526 1.89943 1.20681 1.24970 1.91158 1.23655 0.86418 0.95790 0.97184 0.90802 0.83320 0.85732 0.83205 0.75619 0.76844 0.90525 0.90320 0.92426 0.92938 0.77353 0.89354 0.89935 0.90036 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 13.96 55.48 0.77 -23.17 16 2 C 0.07 1.72 5.49 -17.51 -0.10 1.62 16 3 Si 0.91 19.66 28.62 -169.99 -4.86 14.79 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.23 9.94 30.88 0.31 -9.92 16 8 H 0.11 2.96 5.44 -52.48 -0.29 2.67 16 9 O -0.21 -4.98 8.00 0.03 0.00 -4.98 16 10 C 0.16 3.44 6.66 -38.94 -0.26 3.18 16 11 C -0.24 -5.15 9.14 -39.36 -0.36 -5.50 16 12 C 0.12 2.40 7.29 -39.43 -0.29 2.12 16 13 F -0.15 -2.81 17.26 2.25 0.04 -2.78 16 14 C -0.22 -3.80 10.02 -39.48 -0.40 -4.20 16 15 C -0.06 -1.12 8.71 -39.43 -0.34 -1.47 16 16 C 0.08 1.57 6.45 -83.44 -0.54 1.03 16 17 N -0.67 -10.69 5.30 -14.07 -0.07 -10.77 16 18 C 0.70 10.42 8.37 -86.91 -0.73 9.69 16 19 O -0.58 -10.17 13.51 5.29 0.07 -10.10 16 20 N -0.75 -7.76 5.32 -65.22 -0.35 -8.11 16 21 C 0.16 1.37 5.33 -4.04 -0.02 1.35 16 22 C -0.15 -1.15 1.36 -154.13 -0.21 -1.36 16 23 C 0.10 0.70 6.48 37.16 0.24 0.94 16 24 O -0.56 -4.35 11.93 -54.40 -0.65 -5.00 16 25 C 0.05 0.41 7.75 24.59 0.19 0.60 16 26 O -0.35 -3.88 11.69 -54.40 -0.64 -4.51 16 27 C 0.05 0.42 7.57 24.58 0.19 0.60 16 28 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.15 3.31 5.63 -52.48 -0.30 3.02 16 30 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.15 2.59 5.78 -52.49 -0.30 2.28 16 32 H 0.41 6.00 8.36 -40.82 -0.34 5.66 16 33 H 0.40 3.33 6.66 -40.82 -0.27 3.06 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.73 7.87 -51.92 -0.41 0.32 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.31 6.35 -51.93 -0.33 -0.02 16 38 H 0.38 1.39 9.12 45.56 0.42 1.80 16 39 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 41 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 42 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -31.88 357.64 -6.51 -38.39 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.90 Total: 12.14 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.31 Total: -1.31 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.35 Total: -42.04 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.21 Total: -24.59 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.86 Total: 14.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.88 -6.51 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747354002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.835 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds