Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47119 * 269.99907 * 3 2 1 5 5 H 1.48502 * 109.46990 * 29.99654 * 3 2 1 6 6 H 1.48496 * 109.47498 * 149.99658 * 3 2 1 7 7 C 1.38638 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00024 * 0.02562 * 7 2 1 9 9 O 1.34800 * 120.00113 * 180.02562 * 7 2 1 10 10 C 1.35785 * 117.00242 * 174.97828 * 9 7 2 11 11 C 1.38735 * 120.08407 * 5.19395 * 10 9 7 12 12 C 1.38342 * 119.97510 * 179.97438 * 11 10 9 13 13 F 1.35103 * 119.92553 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.15392 * 0.02562 * 12 11 10 15 15 C 1.38203 * 120.17243 * 359.74301 * 14 12 11 16 16 C 1.38689 * 120.01909 * 0.50764 * 15 14 12 17 17 N 1.40140 * 120.07530 * 179.76555 * 16 15 14 18 18 C 1.34781 * 119.99742 * 335.23692 * 17 16 15 19 19 O 1.21591 * 120.00061 * 354.32265 * 18 17 16 20 20 N 1.34776 * 119.99636 * 174.32915 * 18 17 16 21 21 C 1.46498 * 119.99846 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47133 * 180.02562 * 21 20 18 23 23 C 1.53001 * 113.56389 * 314.27217 * 22 21 20 24 24 O 1.42901 * 109.46902 * 175.38991 * 23 22 21 25 25 C 1.53366 * 114.56616 * 179.97438 * 22 21 20 26 26 O 1.43346 * 88.44813 * 220.42202 * 25 22 21 27 27 C 1.43345 * 88.32204 * 28.14887 * 26 25 22 28 28 H 0.96994 * 120.00122 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.01225 * 359.96144 * 11 10 9 30 30 H 1.08005 * 119.91858 * 180.02562 * 14 12 11 31 31 H 1.07998 * 119.98770 * 180.25571 * 15 14 12 32 32 H 0.97000 * 120.00249 * 155.23132 * 17 16 15 33 33 H 0.97003 * 120.00487 * 359.97438 * 20 18 17 34 34 H 1.09000 * 109.47420 * 59.99855 * 21 20 18 35 35 H 1.09007 * 109.47208 * 299.99666 * 21 20 18 36 36 H 1.08994 * 109.47304 * 295.39151 * 23 22 21 37 37 H 1.08998 * 109.47045 * 55.39496 * 23 22 21 38 38 H 0.96703 * 113.99893 * 179.97438 * 24 23 22 39 39 H 1.09001 * 113.39255 * 105.52322 * 25 22 21 40 40 H 1.09004 * 113.43733 * 335.32467 * 25 22 21 41 41 H 1.09002 * 113.38803 * 86.74930 * 27 26 25 42 42 H 1.09000 * 113.39641 * 216.94739 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3569 -1.2007 0.0011 10 6 3.9734 -2.4058 0.1075 11 6 3.2239 -3.5733 0.1009 12 6 3.8543 -4.8000 0.2089 13 9 3.1235 -5.9362 0.2030 14 6 5.2333 -4.8659 0.3243 15 6 5.9864 -3.7071 0.3267 16 6 5.3614 -2.4733 0.2240 17 7 6.1235 -1.2972 0.2313 18 6 7.3380 -1.2849 0.8156 19 8 7.7292 -2.2613 1.4255 20 7 8.1188 -0.1901 0.7239 21 6 9.4386 -0.1764 1.3594 22 6 10.1125 1.1737 1.1066 23 6 10.0082 1.6472 -0.3446 24 8 10.5680 2.9569 -0.4596 25 6 11.5087 1.3153 1.7251 26 8 11.1685 2.6593 2.0894 27 6 9.7962 2.2500 2.1524 28 1 -0.4850 0.8400 0.0004 29 1 2.1486 -3.5245 0.0118 30 1 5.7216 -5.8257 0.4080 31 1 7.0615 -3.7622 0.4126 32 1 5.7770 -0.4922 -0.1843 33 1 7.8068 0.5888 0.2371 34 1 10.0524 -0.9735 0.9397 35 1 9.3268 -0.3309 2.4327 36 1 10.5545 0.9604 -0.9910 37 1 8.9604 1.6724 -0.6441 38 1 10.5362 3.3210 -1.3550 39 1 12.3143 1.2560 0.9932 40 1 11.6712 0.6624 2.5827 41 1 9.5106 1.8410 3.1216 42 1 9.1011 3.0098 1.7950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747354002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -138.681700 kcal Electronic energy + Delta-G solvation = -29457.083592 eV Core-core repulsion = 24932.981150 eV Total energy + Delta-G solvation = -4524.102443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82942 -42.27672 -41.70842 -40.46363 -38.24723 -37.37561 -36.12336 -35.63716 -34.46520 -32.37485 -31.18894 -29.92065 -27.36760 -27.22563 -27.05690 -26.18797 -24.07634 -23.21031 -21.97632 -20.26601 -20.13059 -19.77952 -19.43258 -18.54395 -18.10521 -17.37273 -17.18037 -17.07846 -16.90030 -16.63861 -16.43051 -16.35695 -15.97284 -15.85914 -15.64913 -15.54559 -15.23998 -15.08728 -14.98737 -14.53895 -14.25783 -13.91653 -13.72230 -13.58593 -13.22077 -13.12529 -12.63990 -12.42920 -12.37780 -12.16826 -12.00995 -11.79531 -11.65546 -11.40878 -11.07742 -10.92133 -10.79633 -10.63034 -10.19247 -9.59899 -8.74396 -8.50942 -6.25105 0.18481 0.41403 1.33441 1.38769 1.48941 1.52026 1.99106 2.26538 2.66446 2.75706 2.87739 2.89009 3.03958 3.17335 3.29753 3.40109 3.60012 3.90773 4.07443 4.15298 4.28683 4.31120 4.37281 4.48607 4.49951 4.55129 4.62417 4.65847 4.77995 4.88408 4.91087 5.05258 5.08606 5.14981 5.18682 5.26918 5.40415 5.46264 5.59780 5.81683 5.88213 6.09899 6.80730 6.87220 6.92334 7.37104 7.46730 8.60108 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.003384 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.105978 B = 8272.015046 C =10591.165741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.222 6.222 10 C 0.135 3.865 11 C -0.254 4.254 12 C 0.112 3.888 13 F -0.148 7.148 14 C -0.189 4.189 15 C -0.062 4.062 16 C 0.098 3.902 17 N -0.667 5.667 18 C 0.705 3.295 19 O -0.604 6.604 20 N -0.729 5.729 21 C 0.160 3.840 22 C -0.137 4.137 23 C 0.100 3.900 24 O -0.577 6.577 25 C 0.050 3.950 26 O -0.380 6.380 27 C 0.041 3.959 28 H 0.285 0.715 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.396 0.604 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.543 3.344 -1.550 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.171 1.171 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.128 6.128 10 C 0.082 3.918 11 C -0.275 4.275 12 C 0.092 3.908 13 F -0.126 7.126 14 C -0.208 4.208 15 C -0.082 4.082 16 C 0.002 3.998 17 N -0.314 5.314 18 C 0.406 3.594 19 O -0.484 6.484 20 N -0.386 5.386 21 C 0.036 3.964 22 C -0.138 4.138 23 C 0.022 3.978 24 O -0.385 6.385 25 C -0.027 4.027 26 O -0.298 6.298 27 C -0.036 4.036 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.177 0.823 31 H 0.184 0.816 32 H 0.252 0.748 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.082 3.009 -0.345 23.280 hybrid contribution -1.545 0.864 -0.965 2.016 sum 21.537 3.873 -1.310 21.922 Atomic orbital electron populations 1.69744 1.07287 1.29823 1.49256 1.25346 0.95846 1.02453 0.95118 0.85198 0.79267 0.76649 0.79570 1.18367 1.20281 1.17143 1.20632 0.77695 0.96178 1.53158 0.90386 1.83427 1.21369 1.25522 1.82513 1.18696 0.90308 0.85422 0.97335 1.20959 1.01275 0.91398 1.13848 1.17522 0.89942 0.80686 1.02686 1.91429 1.78055 1.49032 1.94125 1.20965 0.90430 1.00626 1.08800 1.21056 1.01536 0.88373 0.97282 1.16817 0.85783 0.87361 1.09858 1.42248 1.16855 1.12864 1.59404 1.15904 0.80274 0.84039 0.79198 1.90852 1.74423 1.35374 1.47731 1.45043 1.18257 1.16093 1.59206 1.21154 0.81109 0.95654 0.98449 1.23449 0.98448 0.95036 0.96862 1.21714 0.98171 0.85035 0.92886 1.86584 1.84183 1.31544 1.36205 1.23697 0.95833 0.83898 0.99295 1.89920 1.21754 1.26757 1.91412 1.23762 0.85675 0.96148 0.98025 0.90494 0.85664 0.82251 0.81641 0.74796 0.75397 0.89739 0.90608 0.91154 0.92024 0.75459 0.88720 0.88515 0.89424 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 13.96 21.61 0.30 -52.30 16 2 C 0.01 0.61 5.49 84.83 0.47 1.08 16 3 Si 0.97 40.42 28.62 68.60 1.96 42.39 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.40 -21.88 9.94 67.92 0.68 -21.20 16 8 H 0.08 4.60 5.44 -2.91 -0.02 4.58 16 9 O -0.22 -10.56 8.00 -22.82 -0.18 -10.75 16 10 C 0.13 5.80 6.66 22.68 0.15 5.95 16 11 C -0.25 -11.05 9.14 22.41 0.20 -10.85 16 12 C 0.11 4.22 7.29 22.37 0.16 4.38 16 13 F -0.15 -5.47 17.26 44.97 0.78 -4.69 16 14 C -0.19 -6.05 10.02 22.33 0.22 -5.83 16 15 C -0.06 -2.03 8.71 22.37 0.19 -1.84 16 16 C 0.10 3.53 6.45 38.21 0.25 3.78 16 17 N -0.67 -19.85 5.30 -316.70 -1.68 -21.53 16 18 C 0.71 18.80 8.37 179.05 1.50 20.30 16 19 O -0.60 -19.42 13.51 -4.00 -0.05 -19.48 16 20 N -0.73 -12.78 5.32 -478.52 -2.55 -15.32 16 21 C 0.16 2.29 5.33 86.38 0.46 2.75 16 22 C -0.14 -1.72 1.36 -51.94 -0.07 -1.79 16 23 C 0.10 1.06 6.48 71.98 0.47 1.53 16 24 O -0.58 -7.73 11.93 -130.66 -1.56 -9.29 16 25 C 0.05 0.67 7.75 63.84 0.49 1.17 16 26 O -0.38 -7.83 11.69 -130.66 -1.53 -9.36 16 27 C 0.04 0.65 7.57 63.84 0.48 1.14 16 28 H 0.29 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.13 6.01 5.63 -2.91 -0.02 5.99 16 30 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 31 H 0.17 5.09 5.78 -2.91 -0.02 5.07 16 32 H 0.42 11.23 8.36 -92.71 -0.78 10.45 16 33 H 0.41 5.46 6.66 -92.71 -0.62 4.85 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.19 7.87 -2.38 -0.02 1.18 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.53 6.35 -2.39 -0.02 0.51 16 38 H 0.40 2.02 9.12 -74.05 -0.68 1.34 16 39 H 0.09 1.14 8.13 -2.39 -0.02 1.12 16 40 H 0.10 1.00 8.11 -2.39 -0.02 0.98 16 41 H 0.09 1.26 7.92 -2.39 -0.02 1.24 16 42 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -70.28 357.64 0.21 -70.07 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.94 Total: 29.70 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.66 Total: 0.56 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -3.92 Total: -89.15 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -3.32 Total: -48.88 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.96 Total: 42.39 kcal Total: -70.28 0.21 -70.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747354002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.611 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds