Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38639 * 120.46637 * 2 1 4 4 C 1.38584 * 118.48673 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.35691 * 359.97438 * 4 3 2 6 6 N 1.31480 * 120.90785 * 0.02562 * 5 4 3 7 7 C 1.32776 * 121.63999 * 0.02562 * 6 5 4 8 8 C 1.48071 * 119.72879 * 179.97438 * 7 6 5 9 9 O 1.21425 * 120.00354 * 173.80769 * 8 7 6 10 10 O 1.34680 * 119.99280 * 353.80770 * 8 7 6 11 11 C 1.45204 * 116.99598 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47044 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00299 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.39248 * 120.00117 * 184.79702 * 14 12 11 16 16 C 1.39473 * 119.82913 * 213.35053 * 15 14 12 17 17 C 1.36379 * 120.16431 * 179.75834 * 16 15 14 18 18 C 1.40869 * 119.82824 * 0.51102 * 17 16 15 19 19 C 1.41158 * 120.16540 * 179.72275 * 18 17 16 20 20 H 1.07996 * 119.99548 * 204.64965 * 19 18 17 21 21 C 1.39906 * 119.99670 * 24.64332 * 19 18 17 22 22 N 1.30870 * 120.00498 * 15.15212 * 21 19 18 23 23 Si 1.86802 * 119.99443 * 195.14912 * 21 19 18 24 24 H 1.48502 * 109.46949 * 90.00226 * 23 21 19 25 25 H 1.48504 * 109.47120 * 210.00057 * 23 21 19 26 26 H 1.48496 * 109.47228 * 329.99920 * 23 21 19 27 27 C 1.40867 * 119.67296 * 359.73675 * 18 17 16 28 28 C 1.36372 * 119.82650 * 0.02562 * 27 18 17 29 29 H 1.08993 * 109.47236 * 262.66835 * 1 2 3 30 30 H 1.08997 * 109.47096 * 22.66924 * 1 2 3 31 31 H 1.09003 * 109.46841 * 142.66720 * 1 2 3 32 32 H 1.07995 * 120.75896 * 0.04148 * 3 2 1 33 33 H 1.07996 * 120.31968 * 180.02562 * 4 3 2 34 34 H 1.08003 * 119.54871 * 180.27457 * 5 4 3 35 35 H 1.09003 * 109.46935 * 300.00091 * 11 10 8 36 36 H 1.09004 * 109.47060 * 60.00260 * 11 10 8 37 37 H 0.96998 * 119.99827 * 4.79442 * 14 12 11 38 38 H 1.07996 * 119.92158 * 0.02562 * 16 15 14 39 39 H 1.08006 * 120.08825 * 180.24788 * 17 16 15 40 40 H 0.96998 * 119.99939 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.08679 * 179.97438 * 27 18 17 42 42 H 1.08008 * 119.91937 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1471 -0.0005 5 6 4.2325 -0.0839 -0.0005 6 7 3.5413 -1.2024 -0.0005 7 6 2.2135 -1.2006 -0.0010 8 6 1.4776 -2.4855 -0.0015 9 8 0.2686 -2.4928 0.1114 10 8 2.1493 -3.6460 -0.1273 11 6 1.3631 -4.8668 -0.1191 12 6 2.2782 -6.0546 -0.2699 13 8 3.4751 -5.8887 -0.3736 14 7 1.7666 -7.3013 -0.2885 15 6 2.6177 -8.4027 -0.3272 16 6 2.2307 -9.5549 -1.0113 17 6 3.0611 -10.6358 -1.0577 18 6 4.3077 -10.5903 -0.4033 19 6 5.1702 -11.7070 -0.4418 20 1 5.9029 -11.8505 0.3385 21 6 5.0757 -12.6280 -1.4907 22 7 4.4137 -12.3179 -2.5763 23 14 5.8944 -14.3004 -1.3417 24 1 4.9414 -15.2661 -0.7380 25 1 6.2950 -14.7773 -2.6899 26 1 7.0977 -14.1873 -0.4790 27 6 4.6893 -9.4249 0.2899 28 6 3.8504 -8.3502 0.3234 29 1 -0.3633 -0.1311 1.0192 30 1 -0.3633 0.9482 -0.3961 31 1 -0.3633 -0.8172 -0.6232 32 1 1.6901 2.1416 0.0007 33 1 4.1721 2.0599 -0.0001 34 1 5.3117 -0.1248 0.0035 35 1 0.8204 -4.9431 0.8231 36 1 0.6538 -4.8478 -0.9466 37 1 0.8054 -7.4314 -0.2750 38 1 1.2730 -9.5897 -1.5092 39 1 2.7619 -11.5259 -1.5912 40 1 4.3479 -12.9566 -3.3033 41 1 5.6433 -9.3828 0.7943 42 1 4.1412 -7.4561 0.8548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750515390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -50.683657 kcal Electronic energy + Delta-G solvation = -27200.235372 eV Core-core repulsion = 23110.718036 eV Total energy + Delta-G solvation = -4089.517336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.27954 -40.08009 -39.34466 -37.35058 -36.55478 -34.46260 -33.93388 -33.01837 -32.59144 -29.89864 -29.47604 -28.44673 -27.67649 -25.34624 -24.61775 -22.79806 -21.87581 -21.46450 -20.78985 -19.74542 -18.58193 -17.64061 -17.35296 -16.93793 -16.82258 -16.48195 -16.06627 -15.83503 -15.22931 -15.10691 -14.69335 -14.31480 -13.94342 -13.82204 -13.57241 -13.29770 -13.10931 -12.94169 -12.76214 -12.68056 -12.59130 -12.35567 -12.09639 -11.82706 -11.34729 -11.13330 -11.04413 -10.85503 -10.74113 -10.65784 -10.26746 -10.01156 -9.87817 -9.60544 -9.46395 -9.40447 -9.13700 -8.92752 -7.54688 -6.99367 -6.73667 -4.31286 0.12794 0.77307 2.10474 2.12126 2.51178 2.97058 3.06938 3.10424 3.11198 3.33236 3.39424 3.55863 3.92264 3.94277 4.28658 4.33215 4.47378 4.49051 4.62255 4.81551 4.92777 5.02447 5.03604 5.10058 5.22355 5.34440 5.55816 5.67346 5.70042 5.77732 6.02999 6.19306 6.24719 6.42668 6.74686 6.90709 7.03518 7.17110 7.23434 7.28304 7.58733 7.59950 7.70997 7.87630 8.02994 8.24632 8.27685 8.58493 8.70131 8.88117 8.98397 10.17444 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.001835 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.871636 B =15253.532028 C =15935.896121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.068 4.068 3 C -0.090 4.090 4 C -0.136 4.136 5 C 0.091 3.909 6 N -0.423 5.423 7 C 0.086 3.914 8 C 0.523 3.477 9 O -0.497 6.497 10 O -0.303 6.303 11 C 0.049 3.951 12 C 0.496 3.504 13 O -0.504 6.504 14 N -0.645 5.645 15 C -0.008 4.008 16 C -0.112 4.112 17 C -0.154 4.154 18 C 0.104 3.896 19 C -0.454 4.454 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.215 4.215 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.281 0.719 41 H 0.096 0.904 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 23.100 3.475 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.156 4.156 5 C -0.070 4.070 6 N -0.134 5.134 7 C -0.050 4.050 8 C 0.366 3.634 9 O -0.385 6.385 10 O -0.216 6.216 11 C -0.029 4.029 12 C 0.281 3.719 13 O -0.378 6.378 14 N -0.290 5.290 15 C -0.100 4.100 16 C -0.132 4.132 17 C -0.174 4.174 18 C 0.101 3.899 19 C -0.484 4.484 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.235 4.235 28 C -0.096 4.096 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.476 22.264 3.203 23.703 hybrid contribution -0.594 0.022 -0.117 0.605 sum -8.070 22.287 3.087 23.903 Atomic orbital electron populations 1.21102 0.88737 1.03641 1.04192 1.20921 0.98447 0.92027 0.95615 1.21542 0.94178 0.97903 0.97939 1.22523 0.95304 1.00096 0.97639 1.22960 1.00955 0.86914 0.96160 1.67725 1.06583 1.31736 1.07322 1.19843 0.90178 0.90248 1.04732 1.20838 0.85303 0.84182 0.73046 1.90804 1.14272 1.87501 1.45967 1.86751 1.39507 1.13347 1.82030 1.22810 0.93457 0.81885 1.04705 1.19876 0.89181 0.83644 0.79213 1.90771 1.15135 1.84944 1.46922 1.42781 1.09417 1.04100 1.72681 1.17118 0.95053 0.87802 1.10044 1.20221 0.99257 0.94059 0.99652 1.20983 0.93816 0.98205 1.04358 1.17696 0.91367 0.91300 0.89501 1.19595 1.16215 1.05269 1.07271 0.90318 1.25947 0.94380 1.00007 0.94194 1.69829 1.33193 1.35121 1.03757 0.86256 0.80227 0.81448 0.78459 1.19288 1.20313 1.18596 1.20655 0.99560 0.93926 1.09332 1.20268 0.93508 0.97714 0.98087 0.89958 0.91600 0.88518 0.83694 0.83790 0.81527 0.88143 0.88241 0.76994 0.89074 0.85662 0.90847 0.88607 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.71 36.01 0.31 -0.62 16 2 C -0.07 -0.62 5.93 -104.07 -0.62 -1.24 16 3 C -0.09 -0.58 9.83 -39.31 -0.39 -0.97 16 4 C -0.14 -0.83 10.12 -39.31 -0.40 -1.23 16 5 C 0.09 0.80 11.18 -17.56 -0.20 0.61 16 6 N -0.42 -5.51 10.13 -9.81 -0.10 -5.60 16 7 C 0.09 1.07 6.75 -83.03 -0.56 0.51 16 8 C 0.52 7.24 7.88 34.76 0.27 7.52 16 9 O -0.50 -6.62 13.12 -19.21 -0.25 -6.87 16 10 O -0.30 -4.84 9.58 -47.12 -0.45 -5.29 16 11 C 0.05 0.67 5.95 36.00 0.21 0.89 16 12 C 0.50 9.03 7.64 -10.99 -0.08 8.94 16 13 O -0.50 -11.64 14.15 -14.10 -0.20 -11.84 16 14 N -0.64 -11.37 5.31 -9.74 -0.05 -11.42 16 15 C -0.01 -0.19 6.29 -83.57 -0.53 -0.71 16 16 C -0.11 -2.55 9.89 -39.79 -0.39 -2.95 16 17 C -0.15 -3.95 8.64 -39.26 -0.34 -4.29 16 18 C 0.10 2.81 5.58 -106.80 -0.60 2.21 16 19 C -0.45 -12.08 9.05 -37.85 -0.34 -12.42 16 20 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 21 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 22 N -0.79 -20.45 10.80 55.55 0.60 -19.85 16 23 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.21 -5.52 9.74 -39.26 -0.38 -5.90 16 28 C -0.08 -1.85 8.57 -39.79 -0.34 -2.19 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 31 H 0.10 0.91 5.91 -51.93 -0.31 0.60 16 32 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 5.26 8.81 -40.82 -0.36 4.90 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.13 3.29 6.05 -52.48 -0.32 2.97 16 40 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 41 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.10 2.48 6.39 -52.48 -0.34 2.15 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -33.94 367.05 -9.07 -43.01 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.67 Total: 8.87 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -4.45 Total: -10.14 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.45 Total: -36.88 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.90 Total: -24.01 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.94 -9.07 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750515390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.669 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds