Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38639 * 120.46637 * 2 1 4 4 C 1.38584 * 118.48673 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.35691 * 359.97438 * 4 3 2 6 6 N 1.31480 * 120.90785 * 0.02562 * 5 4 3 7 7 C 1.32776 * 121.63999 * 0.02562 * 6 5 4 8 8 C 1.48071 * 119.72879 * 179.97438 * 7 6 5 9 9 O 1.21425 * 120.00354 * 173.80769 * 8 7 6 10 10 O 1.34680 * 119.99280 * 353.80770 * 8 7 6 11 11 C 1.45204 * 116.99598 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47044 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00299 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99902 * 179.97438 * 12 11 10 15 15 C 1.39248 * 120.00117 * 184.79702 * 14 12 11 16 16 C 1.39473 * 119.82913 * 213.35053 * 15 14 12 17 17 C 1.36379 * 120.16431 * 179.75834 * 16 15 14 18 18 C 1.40869 * 119.82824 * 0.51102 * 17 16 15 19 19 C 1.41158 * 120.16540 * 179.72275 * 18 17 16 20 20 H 1.07996 * 119.99548 * 204.64965 * 19 18 17 21 21 C 1.39906 * 119.99670 * 24.64332 * 19 18 17 22 22 N 1.30870 * 120.00498 * 15.15212 * 21 19 18 23 23 Si 1.86802 * 119.99443 * 195.14912 * 21 19 18 24 24 H 1.48502 * 109.46949 * 90.00226 * 23 21 19 25 25 H 1.48504 * 109.47120 * 210.00057 * 23 21 19 26 26 H 1.48496 * 109.47228 * 329.99920 * 23 21 19 27 27 C 1.40867 * 119.67296 * 359.73675 * 18 17 16 28 28 C 1.36372 * 119.82650 * 0.02562 * 27 18 17 29 29 H 1.08993 * 109.47236 * 262.66835 * 1 2 3 30 30 H 1.08997 * 109.47096 * 22.66924 * 1 2 3 31 31 H 1.09003 * 109.46841 * 142.66720 * 1 2 3 32 32 H 1.07995 * 120.75896 * 0.04148 * 3 2 1 33 33 H 1.07996 * 120.31968 * 180.02562 * 4 3 2 34 34 H 1.08003 * 119.54871 * 180.27457 * 5 4 3 35 35 H 1.09003 * 109.46935 * 300.00091 * 11 10 8 36 36 H 1.09004 * 109.47060 * 60.00260 * 11 10 8 37 37 H 0.96998 * 119.99827 * 4.79442 * 14 12 11 38 38 H 1.07996 * 119.92158 * 0.02562 * 16 15 14 39 39 H 1.08006 * 120.08825 * 180.24788 * 17 16 15 40 40 H 0.96998 * 119.99939 * 180.02562 * 22 21 19 41 41 H 1.07996 * 120.08679 * 179.97438 * 27 18 17 42 42 H 1.08008 * 119.91937 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1950 0.0000 4 6 3.5950 1.1471 -0.0005 5 6 4.2325 -0.0839 -0.0005 6 7 3.5413 -1.2024 -0.0005 7 6 2.2135 -1.2006 -0.0010 8 6 1.4776 -2.4855 -0.0015 9 8 0.2686 -2.4928 0.1114 10 8 2.1493 -3.6460 -0.1273 11 6 1.3631 -4.8668 -0.1191 12 6 2.2782 -6.0546 -0.2699 13 8 3.4751 -5.8887 -0.3736 14 7 1.7666 -7.3013 -0.2885 15 6 2.6177 -8.4027 -0.3272 16 6 2.2307 -9.5549 -1.0113 17 6 3.0611 -10.6358 -1.0577 18 6 4.3077 -10.5903 -0.4033 19 6 5.1702 -11.7070 -0.4418 20 1 5.9029 -11.8505 0.3385 21 6 5.0757 -12.6280 -1.4907 22 7 4.4137 -12.3179 -2.5763 23 14 5.8944 -14.3004 -1.3417 24 1 4.9414 -15.2661 -0.7380 25 1 6.2950 -14.7773 -2.6899 26 1 7.0977 -14.1873 -0.4790 27 6 4.6893 -9.4249 0.2899 28 6 3.8504 -8.3502 0.3234 29 1 -0.3633 -0.1311 1.0192 30 1 -0.3633 0.9482 -0.3961 31 1 -0.3633 -0.8172 -0.6232 32 1 1.6901 2.1416 0.0007 33 1 4.1721 2.0599 -0.0001 34 1 5.3117 -0.1248 0.0035 35 1 0.8204 -4.9431 0.8231 36 1 0.6538 -4.8478 -0.9466 37 1 0.8054 -7.4314 -0.2750 38 1 1.2730 -9.5897 -1.5092 39 1 2.7619 -11.5259 -1.5912 40 1 4.3479 -12.9566 -3.3033 41 1 5.6433 -9.3828 0.7943 42 1 4.1412 -7.4561 0.8548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750515390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -71.358047 kcal Electronic energy + Delta-G solvation = -27201.131881 eV Core-core repulsion = 23110.718036 eV Total energy + Delta-G solvation = -4090.413845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16039 -41.30665 -40.54878 -39.09121 -37.70636 -36.22770 -34.82472 -34.59415 -33.23757 -31.60840 -31.28477 -29.82929 -28.49029 -26.72477 -25.80301 -23.69710 -23.33420 -22.72222 -22.33627 -21.37361 -19.53813 -19.28685 -18.86829 -17.99608 -17.90743 -17.70442 -17.29372 -17.00180 -16.48736 -16.35076 -15.77638 -15.65273 -15.33231 -14.96500 -14.89877 -14.47747 -14.09917 -14.07115 -13.94224 -13.84638 -13.73650 -13.67614 -13.43533 -13.23869 -13.00632 -12.86040 -12.77943 -12.49666 -11.95987 -11.78624 -11.52032 -11.46281 -11.21717 -10.91434 -10.85330 -10.70533 -10.55104 -10.13098 -9.49671 -8.89091 -8.61122 -6.30306 -0.57967 0.18450 0.72899 1.10950 1.12239 1.23620 1.38800 1.41576 1.52983 1.69700 2.21422 2.31485 2.70732 2.73259 3.12154 3.55128 3.64996 3.71362 3.75058 3.86563 3.96115 3.99307 4.01260 4.37763 4.40472 4.47001 4.49796 4.73740 4.74866 4.90313 4.95311 5.04625 5.08936 5.11838 5.13341 5.28128 5.33375 5.39916 5.61868 5.63824 5.85909 5.99469 6.07284 6.33047 6.35336 6.61284 6.64729 6.84275 6.91272 6.95913 7.27836 8.32096 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.001835 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.871636 B =15253.532028 C =15935.896121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.069 4.069 3 C -0.084 4.084 4 C -0.115 4.115 5 C 0.075 3.925 6 N -0.474 5.474 7 C 0.046 3.954 8 C 0.519 3.481 9 O -0.499 6.499 10 O -0.334 6.334 11 C 0.057 3.943 12 C 0.498 3.502 13 O -0.558 6.558 14 N -0.633 5.633 15 C 0.005 3.995 16 C -0.108 4.108 17 C -0.172 4.172 18 C 0.073 3.927 19 C -0.492 4.492 20 H 0.075 0.925 21 C 0.032 3.968 22 N -0.824 5.824 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.261 1.261 27 C -0.234 4.234 28 C -0.088 4.088 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.184 0.816 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.422 0.578 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.290 0.710 41 H 0.094 0.906 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.871 25.435 3.278 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.109 4.109 4 C -0.134 4.134 5 C -0.086 4.086 6 N -0.186 5.186 7 C -0.088 4.088 8 C 0.364 3.636 9 O -0.388 6.388 10 O -0.249 6.249 11 C -0.020 4.020 12 C 0.285 3.715 13 O -0.436 6.436 14 N -0.280 5.280 15 C -0.088 4.088 16 C -0.128 4.128 17 C -0.192 4.192 18 C 0.071 3.929 19 C -0.521 4.521 20 H 0.093 0.907 21 C -0.182 4.182 22 N -0.450 5.450 23 Si 0.808 3.192 24 H -0.183 1.183 25 H -0.192 1.192 26 H -0.185 1.185 27 C -0.254 4.254 28 C -0.108 4.108 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.203 0.797 33 H 0.205 0.795 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.260 0.740 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.073 24.618 3.014 26.409 hybrid contribution -0.149 -0.451 -0.051 0.478 sum -9.222 24.167 2.963 26.036 Atomic orbital electron populations 1.21087 0.87888 1.04492 1.03872 1.21197 0.99165 0.91916 0.94882 1.22054 0.94449 0.98306 0.96126 1.22969 0.95566 1.00406 0.94489 1.23440 1.01877 0.87257 0.96068 1.67598 1.07378 1.34245 1.09334 1.19900 0.90499 0.90413 1.07975 1.21251 0.85543 0.84103 0.72740 1.90783 1.14141 1.87524 1.46373 1.86735 1.41011 1.14431 1.82695 1.22808 0.92096 0.79609 1.07444 1.20655 0.89039 0.84639 0.77174 1.90754 1.17848 1.85806 1.49163 1.42631 1.10265 1.02945 1.72149 1.17169 0.94701 0.88980 1.07935 1.20500 1.00227 0.93101 0.98958 1.21015 0.94105 0.99035 1.05031 1.18028 0.92400 0.91942 0.90556 1.19817 1.17169 1.06724 1.08369 0.90717 1.26800 0.94802 1.03438 0.93198 1.69867 1.34076 1.36613 1.04396 0.85122 0.79112 0.76207 0.78759 1.18273 1.19199 1.18531 1.20774 1.00085 0.94448 1.10107 1.20368 0.94573 0.97122 0.98776 0.90018 0.88548 0.90529 0.79690 0.79544 0.79928 0.85235 0.85191 0.74000 0.85409 0.86551 0.89948 0.88814 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.71 71.24 0.62 -0.97 16 2 C -0.07 -1.16 5.93 -19.51 -0.12 -1.27 16 3 C -0.08 -0.79 9.83 22.45 0.22 -0.57 16 4 C -0.12 -1.02 10.12 22.45 0.23 -0.79 16 5 C 0.07 1.24 11.18 84.84 0.95 2.19 16 6 N -0.47 -12.59 10.13 -184.94 -1.87 -14.46 16 7 C 0.05 1.16 6.75 41.87 0.28 1.44 16 8 C 0.52 14.55 7.88 70.43 0.56 15.10 16 9 O -0.50 -13.08 13.12 20.08 0.26 -12.82 16 10 O -0.33 -10.85 9.58 -49.51 -0.47 -11.33 16 11 C 0.06 1.50 5.95 71.23 0.42 1.92 16 12 C 0.50 17.94 7.64 87.65 0.67 18.61 16 13 O -0.56 -26.54 14.15 15.77 0.22 -26.32 16 14 N -0.63 -21.51 5.31 -303.12 -1.61 -23.12 16 15 C 0.01 0.24 6.29 38.56 0.24 0.48 16 16 C -0.11 -4.88 9.89 22.13 0.22 -4.67 16 17 C -0.17 -9.05 8.64 22.48 0.19 -8.85 16 18 C 0.07 4.12 5.58 -21.28 -0.12 4.00 16 19 C -0.49 -27.22 9.05 23.39 0.21 -27.01 16 20 H 0.07 4.02 7.89 -2.91 -0.02 3.99 16 21 C 0.03 1.65 5.19 85.24 0.44 2.09 16 22 N -0.82 -43.20 10.80 21.82 0.24 -42.96 16 23 Si 0.99 38.53 29.59 68.60 2.03 40.56 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 C -0.23 -12.64 9.74 22.48 0.22 -12.42 16 28 C -0.09 -4.46 8.57 22.13 0.19 -4.27 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.10 0.68 8.05 -2.39 -0.02 0.66 16 31 H 0.08 1.38 5.91 -2.39 -0.01 1.36 16 32 H 0.19 0.23 8.06 -2.91 -0.02 0.20 16 33 H 0.19 0.03 8.06 -2.91 -0.02 0.01 16 34 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.13 2.62 8.14 -2.38 -0.02 2.60 16 37 H 0.42 10.07 8.81 -92.71 -0.82 9.25 16 38 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.12 6.27 6.05 -2.91 -0.02 6.25 16 40 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 41 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 42 H 0.10 5.02 6.39 -2.91 -0.02 5.00 16 Total: -1.00 -79.73 367.05 4.49 -75.24 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.27 Total: 30.18 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 5.43 Total: -14.97 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -3.25 Total: -80.54 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: 0.01 Total: -50.47 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -79.73 4.49 -75.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750515390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.880 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds