Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46993 * 270.00361 * 3 2 1 5 5 H 1.48497 * 109.47148 * 30.00144 * 3 2 1 6 6 H 1.48496 * 109.46873 * 150.00586 * 3 2 1 7 7 C 1.38630 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.35780 * 116.99806 * 174.95776 * 9 7 2 11 11 C 1.38740 * 120.08800 * 5.43354 * 10 9 7 12 12 C 1.38340 * 119.97773 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.92951 * 180.02562 * 12 11 10 14 14 C 1.38550 * 120.15181 * 0.02901 * 12 11 10 15 15 C 1.38199 * 120.17103 * 359.67835 * 14 12 11 16 16 C 1.38698 * 120.02179 * 0.59454 * 15 14 12 17 17 N 1.40133 * 120.07208 * 179.70235 * 16 15 14 18 18 C 1.34775 * 120.00114 * 34.59867 * 17 16 15 19 19 O 1.21587 * 120.00092 * 355.62232 * 18 17 16 20 20 N 1.34783 * 119.99797 * 175.62633 * 18 17 16 21 21 C 1.46496 * 119.99877 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47136 * 179.97438 * 21 20 18 23 23 O 1.42901 * 110.45497 * 300.70143 * 22 21 20 24 24 C 1.54511 * 110.51186 * 178.09573 * 22 21 20 25 25 C 1.54482 * 104.06286 * 241.21975 * 24 22 21 26 26 O 1.44425 * 104.80192 * 336.01827 * 25 24 22 27 27 C 1.44431 * 105.27494 * 40.51511 * 26 25 24 28 28 H 0.96997 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.01175 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.91071 * 179.97438 * 14 12 11 31 31 H 1.08000 * 119.98798 * 180.31470 * 15 14 12 32 32 H 0.97007 * 119.99660 * 214.59294 * 17 16 15 33 33 H 0.96996 * 119.99901 * 359.97438 * 20 18 17 34 34 H 1.08998 * 109.47300 * 60.00105 * 21 20 18 35 35 H 1.09007 * 109.47284 * 299.99894 * 21 20 18 36 36 H 0.96699 * 113.99669 * 57.39341 * 23 22 21 37 37 H 1.08999 * 110.50857 * 359.86189 * 24 22 21 38 38 H 1.09000 * 110.51236 * 122.57199 * 24 22 21 39 39 H 1.08998 * 110.37190 * 94.85206 * 25 24 22 40 40 H 1.09004 * 110.36851 * 217.19088 * 25 24 22 41 41 H 1.09003 * 110.37215 * 200.65501 * 27 26 25 42 42 H 1.09006 * 110.37097 * 78.31800 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 -0.1074 11 6 3.4563 -3.4395 -0.0968 12 6 4.2034 -4.5986 -0.2064 13 9 5.5528 -4.5344 -0.1955 14 6 3.5709 -5.8254 -0.3274 15 6 2.1908 -5.8978 -0.3325 16 6 1.4347 -4.7397 -0.2288 17 7 0.0353 -4.8113 -0.2402 18 6 -0.5903 -5.8618 0.3268 19 8 0.0593 -6.7855 0.7773 20 7 -1.9362 -5.8884 0.3942 21 6 -2.6163 -7.0305 1.0100 22 6 -4.1297 -6.8115 0.9582 23 8 -4.4848 -5.6132 1.6512 24 6 -4.8733 -8.0252 1.5593 25 6 -5.7268 -8.5602 0.3881 26 8 -5.9015 -7.4263 -0.4892 27 6 -4.6219 -6.7567 -0.5050 28 1 -0.4850 0.8400 0.0004 29 1 3.9517 -2.4844 -0.0031 30 1 4.1579 -6.7278 -0.4131 31 1 1.7009 -6.8562 -0.4219 32 1 -0.4831 -4.1047 -0.6561 33 1 -2.4545 -5.1514 0.0350 34 1 -2.2987 -7.1259 2.0483 35 1 -2.3618 -7.9409 0.4671 36 1 -4.0465 -4.8197 1.3147 37 1 -4.1628 -8.7823 1.8911 38 1 -5.5118 -7.7113 2.3851 39 1 -5.2009 -9.3626 -0.1291 40 1 -6.6927 -8.9109 0.7518 41 1 -4.7390 -5.7221 -0.8275 42 1 -3.9265 -7.2826 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754988283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -159.028111 kcal Electronic energy + Delta-G solvation = -29395.381571 eV Core-core repulsion = 24870.396842 eV Total energy + Delta-G solvation = -4524.984729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.27439 -40.69717 -39.98198 -38.77358 -36.86788 -36.33875 -34.30545 -34.12720 -32.44529 -31.83379 -29.63979 -29.31748 -28.19271 -25.91178 -25.50309 -23.40084 -22.46953 -21.68846 -20.88586 -20.58635 -18.60232 -18.35434 -17.95319 -17.35656 -16.89628 -16.45666 -16.13437 -15.76571 -15.35196 -15.27499 -15.10375 -14.98283 -14.96298 -14.32062 -14.11635 -13.87027 -13.65320 -13.53318 -13.42839 -13.30344 -12.97727 -12.69967 -12.38559 -12.19180 -12.00573 -11.82795 -11.69478 -11.40318 -11.19166 -10.98803 -10.77383 -10.59241 -10.57503 -9.99126 -9.93164 -9.81358 -9.52515 -9.20027 -8.99573 -7.91241 -7.15400 -6.64344 -4.22098 1.81193 2.09244 2.68791 3.04154 3.05818 3.10120 3.34093 3.52370 3.72429 3.81998 4.04804 4.25749 4.31401 4.37859 4.44604 4.73349 4.82695 4.85826 4.92409 5.08741 5.13069 5.26480 5.31790 5.34019 5.47812 5.53596 5.58533 5.64400 5.71482 5.99376 6.14423 6.27104 6.36695 6.54185 6.61893 6.87072 6.89032 7.02478 7.04162 7.21263 7.26828 7.62262 7.80008 8.12344 8.72023 8.82247 9.42698 10.52697 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003045 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.827416 B = 9192.077152 C =11420.998487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.158 3.842 11 C -0.258 4.258 12 C 0.129 3.871 13 F -0.151 7.151 14 C -0.229 4.229 15 C -0.049 4.049 16 C 0.075 3.925 17 N -0.662 5.662 18 C 0.707 3.293 19 O -0.582 6.582 20 N -0.749 5.749 21 C 0.121 3.879 22 C 0.091 3.909 23 O -0.544 6.544 24 C -0.141 4.141 25 C 0.044 3.956 26 O -0.368 6.368 27 C 0.020 3.980 28 H 0.272 0.728 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.411 0.589 33 H 0.394 0.606 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.380 0.620 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -12.223 -0.832 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.102 3.898 11 C -0.279 4.279 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.249 4.249 15 C -0.070 4.070 16 C -0.020 4.020 17 N -0.309 5.309 18 C 0.407 3.593 19 O -0.460 6.460 20 N -0.407 5.407 21 C -0.004 4.004 22 C 0.049 3.951 23 O -0.350 6.350 24 C -0.179 4.179 25 C -0.032 4.032 26 O -0.286 6.286 27 C -0.057 4.057 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.247 0.753 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.541 -13.189 -0.142 15.714 hybrid contribution 0.866 1.978 -0.486 2.213 sum -7.676 -11.210 -0.628 13.601 Atomic orbital electron populations 1.69998 1.05927 1.28013 1.45470 1.25269 0.95913 0.98832 0.96117 0.85683 0.79051 0.79756 0.78873 1.19730 1.20154 1.19058 1.21354 0.92009 0.80408 1.53087 0.88823 1.83927 1.33913 1.11263 1.77986 1.18811 0.89485 0.87261 0.94279 1.20849 0.93408 0.98464 1.15187 1.17466 0.75952 0.94340 1.01302 1.91413 1.30138 1.97378 1.94081 1.20489 0.94616 0.95837 1.13967 1.20664 0.92154 0.97392 0.96775 1.16628 0.81100 0.91592 1.12664 1.42156 1.05329 1.24273 1.59130 1.15808 0.81427 0.83197 0.78829 1.90887 1.64415 1.37082 1.53601 1.44973 1.05301 1.24238 1.66182 1.21851 0.89524 0.89188 0.99787 1.22859 0.92712 0.87435 0.92120 1.86620 1.71054 1.16659 1.60670 1.22929 0.99732 0.95318 0.99943 1.23471 1.00746 0.89481 0.89537 1.89169 1.31003 1.41057 1.67373 1.24197 0.86256 0.99502 0.95784 0.91825 0.83939 0.85934 0.83994 0.75301 0.77158 0.90159 0.90319 0.77070 0.88905 0.88712 0.91789 0.88565 0.88339 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.87 13.67 55.48 0.76 -22.11 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.39 -10.14 9.49 30.88 0.29 -9.84 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.27 9.32 0.01 0.00 -4.27 16 10 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 11 C -0.26 -5.53 9.14 -39.36 -0.36 -5.89 16 12 C 0.13 2.54 7.29 -39.43 -0.29 2.26 16 13 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 14 C -0.23 -4.17 10.02 -39.48 -0.40 -4.57 16 15 C -0.05 -0.93 8.70 -39.43 -0.34 -1.27 16 16 C 0.07 1.51 6.33 -83.44 -0.53 0.98 16 17 N -0.66 -11.50 5.20 -14.07 -0.07 -11.58 16 18 C 0.71 11.42 8.41 -86.91 -0.73 10.69 16 19 O -0.58 -11.07 13.76 5.29 0.07 -10.99 16 20 N -0.75 -8.64 5.14 -65.22 -0.34 -8.97 16 21 C 0.12 1.23 4.55 -4.04 -0.02 1.21 16 22 C 0.09 0.81 1.14 -89.05 -0.10 0.71 16 23 O -0.54 -5.64 13.00 -35.23 -0.46 -6.10 16 24 C -0.14 -1.09 6.54 -25.16 -0.16 -1.25 16 25 C 0.04 0.33 7.63 37.94 0.29 0.62 16 26 O -0.37 -3.88 11.65 -35.23 -0.41 -4.29 16 27 C 0.02 0.18 6.46 37.93 0.25 0.42 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.14 3.06 5.64 -52.48 -0.30 2.76 16 30 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.14 2.58 6.19 -52.49 -0.32 2.26 16 32 H 0.41 6.70 8.59 -40.82 -0.35 6.35 16 33 H 0.39 3.62 7.30 -40.82 -0.30 3.33 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.77 8.13 -51.92 -0.42 0.35 16 36 H 0.38 3.10 7.88 45.56 0.36 3.46 16 37 H 0.09 0.57 7.73 -51.93 -0.40 0.17 16 38 H 0.09 0.78 8.00 -51.93 -0.42 0.37 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.07 0.59 7.86 -51.93 -0.41 0.19 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.56 359.13 -6.55 -38.11 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -4.08 Total: 14.90 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.46 Total: -1.63 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.35 Total: -42.66 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.80 Total: -25.66 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.56 -6.55 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.913 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds