Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46993 * 270.00361 * 3 2 1 5 5 H 1.48497 * 109.47148 * 30.00144 * 3 2 1 6 6 H 1.48496 * 109.46873 * 150.00586 * 3 2 1 7 7 C 1.38630 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99718 * 359.97438 * 7 2 1 10 10 C 1.35780 * 116.99806 * 174.95776 * 9 7 2 11 11 C 1.38740 * 120.08800 * 5.43354 * 10 9 7 12 12 C 1.38340 * 119.97773 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.92951 * 180.02562 * 12 11 10 14 14 C 1.38550 * 120.15181 * 0.02901 * 12 11 10 15 15 C 1.38199 * 120.17103 * 359.67835 * 14 12 11 16 16 C 1.38698 * 120.02179 * 0.59454 * 15 14 12 17 17 N 1.40133 * 120.07208 * 179.70235 * 16 15 14 18 18 C 1.34775 * 120.00114 * 34.59867 * 17 16 15 19 19 O 1.21587 * 120.00092 * 355.62232 * 18 17 16 20 20 N 1.34783 * 119.99797 * 175.62633 * 18 17 16 21 21 C 1.46496 * 119.99877 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47136 * 179.97438 * 21 20 18 23 23 O 1.42901 * 110.45497 * 300.70143 * 22 21 20 24 24 C 1.54511 * 110.51186 * 178.09573 * 22 21 20 25 25 C 1.54482 * 104.06286 * 241.21975 * 24 22 21 26 26 O 1.44425 * 104.80192 * 336.01827 * 25 24 22 27 27 C 1.44431 * 105.27494 * 40.51511 * 26 25 24 28 28 H 0.96997 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.01175 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.91071 * 179.97438 * 14 12 11 31 31 H 1.08000 * 119.98798 * 180.31470 * 15 14 12 32 32 H 0.97007 * 119.99660 * 214.59294 * 17 16 15 33 33 H 0.96996 * 119.99901 * 359.97438 * 20 18 17 34 34 H 1.08998 * 109.47300 * 60.00105 * 21 20 18 35 35 H 1.09007 * 109.47284 * 299.99894 * 21 20 18 36 36 H 0.96699 * 113.99669 * 57.39341 * 23 22 21 37 37 H 1.08999 * 110.50857 * 359.86189 * 24 22 21 38 38 H 1.09000 * 110.51236 * 122.57199 * 24 22 21 39 39 H 1.08998 * 110.37190 * 94.85206 * 25 24 22 40 40 H 1.09004 * 110.36851 * 217.19088 * 25 24 22 41 41 H 1.09003 * 110.37215 * 200.65501 * 27 26 25 42 42 H 1.09006 * 110.37097 * 78.31800 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 -0.1074 11 6 3.4563 -3.4395 -0.0968 12 6 4.2034 -4.5986 -0.2064 13 9 5.5528 -4.5344 -0.1955 14 6 3.5709 -5.8254 -0.3274 15 6 2.1908 -5.8978 -0.3325 16 6 1.4347 -4.7397 -0.2288 17 7 0.0353 -4.8113 -0.2402 18 6 -0.5903 -5.8618 0.3268 19 8 0.0593 -6.7855 0.7773 20 7 -1.9362 -5.8884 0.3942 21 6 -2.6163 -7.0305 1.0100 22 6 -4.1297 -6.8115 0.9582 23 8 -4.4848 -5.6132 1.6512 24 6 -4.8733 -8.0252 1.5593 25 6 -5.7268 -8.5602 0.3881 26 8 -5.9015 -7.4263 -0.4892 27 6 -4.6219 -6.7567 -0.5050 28 1 -0.4850 0.8400 0.0004 29 1 3.9517 -2.4844 -0.0031 30 1 4.1579 -6.7278 -0.4131 31 1 1.7009 -6.8562 -0.4219 32 1 -0.4831 -4.1047 -0.6561 33 1 -2.4545 -5.1514 0.0350 34 1 -2.2987 -7.1259 2.0483 35 1 -2.3618 -7.9409 0.4671 36 1 -4.0465 -4.8197 1.3147 37 1 -4.1628 -8.7823 1.8911 38 1 -5.5118 -7.7113 2.3851 39 1 -5.2009 -9.3626 -0.1291 40 1 -6.6927 -8.9109 0.7518 41 1 -4.7390 -5.7221 -0.8275 42 1 -3.9265 -7.2826 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754988283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -183.610184 kcal Electronic energy + Delta-G solvation = -29396.447529 eV Core-core repulsion = 24870.396842 eV Total energy + Delta-G solvation = -4526.050688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.81931 -41.86669 -41.05241 -40.24047 -38.16575 -37.49524 -35.57620 -35.37061 -34.29883 -32.60278 -31.10013 -30.41753 -29.47533 -27.40942 -26.76548 -24.30086 -23.85022 -23.17962 -21.94512 -21.58450 -20.15347 -19.81345 -19.42843 -18.52001 -17.99864 -17.31465 -17.22017 -16.96040 -16.87060 -16.57048 -16.47397 -16.17231 -16.04496 -15.94167 -15.47027 -15.24430 -15.10512 -14.89436 -14.77960 -14.16769 -14.05269 -13.81461 -13.69918 -13.43471 -13.37697 -13.03166 -12.72358 -12.56576 -12.44773 -12.34304 -12.15630 -11.87279 -11.65516 -11.37637 -11.31118 -11.03184 -10.81617 -10.63552 -10.27739 -9.53877 -8.74799 -8.50556 -6.16185 0.21874 0.47739 1.38060 1.44305 1.49446 1.52700 2.01365 2.14645 2.68868 2.86685 3.03066 3.05875 3.07582 3.18813 3.36729 3.46631 3.63376 3.74343 3.95777 4.12684 4.17705 4.24882 4.37490 4.43793 4.55857 4.59577 4.66776 4.69043 4.79916 4.89350 4.95517 5.01646 5.02694 5.23280 5.26229 5.31045 5.38113 5.55543 5.71548 5.83147 5.94258 6.07552 6.57322 6.87137 6.94507 7.40750 7.63261 8.69534 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.003045 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.827416 B = 9192.077152 C =11420.998487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.200 6.200 10 C 0.131 3.869 11 C -0.265 4.265 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.050 4.050 16 C 0.078 3.922 17 N -0.664 5.664 18 C 0.706 3.294 19 O -0.609 6.609 20 N -0.731 5.731 21 C 0.125 3.875 22 C 0.095 3.905 23 O -0.560 6.560 24 C -0.141 4.141 25 C 0.041 3.959 26 O -0.394 6.394 27 C 0.019 3.981 28 H 0.274 0.726 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.414 0.586 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.387 0.613 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 -13.627 -1.064 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.106 6.106 10 C 0.078 3.922 11 C -0.286 4.286 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.311 5.311 18 C 0.407 3.593 19 O -0.489 6.489 20 N -0.388 5.388 21 C 0.001 3.999 22 C 0.054 3.946 23 O -0.368 6.368 24 C -0.179 4.179 25 C -0.035 4.035 26 O -0.313 6.313 27 C -0.058 4.058 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.251 0.749 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.198 -14.626 -0.382 16.771 hybrid contribution 0.777 2.146 -0.415 2.320 sum -7.421 -12.480 -0.797 14.542 Atomic orbital electron populations 1.70099 1.07401 1.28920 1.47504 1.26313 0.96827 1.01944 0.95566 0.84709 0.77871 0.75313 0.79206 1.18867 1.19596 1.18374 1.21721 0.92493 0.81177 1.53781 0.88470 1.83905 1.34598 1.11749 1.80302 1.19165 0.90107 0.87468 0.95504 1.20926 0.93402 0.99057 1.15191 1.17475 0.76219 0.94284 1.01856 1.91428 1.29556 1.97358 1.94061 1.20886 0.94603 0.96427 1.10472 1.20876 0.92436 0.97295 0.96447 1.16871 0.82565 0.91180 1.11118 1.42168 1.04556 1.24851 1.59520 1.15904 0.82586 0.82368 0.78450 1.90856 1.65428 1.37903 1.54719 1.44854 1.03782 1.25057 1.65102 1.21942 0.90082 0.88857 0.99023 1.22876 0.91745 0.87500 0.92506 1.86610 1.71421 1.17453 1.61287 1.22987 0.99929 0.95161 0.99821 1.23668 1.01682 0.89046 0.89130 1.89143 1.31838 1.42185 1.68103 1.24247 0.86025 0.99895 0.95614 0.91639 0.84713 0.82498 0.82762 0.74917 0.75664 0.91335 0.89296 0.76271 0.87167 0.89373 0.90148 0.87393 0.87980 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.38 13.67 21.61 0.30 -49.08 16 2 C -0.01 -0.34 5.49 84.83 0.47 0.13 16 3 Si 1.01 40.05 29.55 68.60 2.03 42.08 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.42 -22.12 9.49 67.91 0.64 -21.47 16 8 H 0.10 4.88 5.20 -2.91 -0.02 4.87 16 9 O -0.20 -10.53 9.32 -22.87 -0.21 -10.75 16 10 C 0.13 6.00 6.66 22.68 0.15 6.15 16 11 C -0.26 -11.41 9.14 22.41 0.20 -11.20 16 12 C 0.12 4.60 7.29 22.37 0.16 4.77 16 13 F -0.15 -5.22 17.26 44.97 0.78 -4.44 16 14 C -0.20 -6.88 10.02 22.34 0.22 -6.66 16 15 C -0.05 -1.79 8.70 22.37 0.19 -1.59 16 16 C 0.08 3.12 6.33 38.22 0.24 3.36 16 17 N -0.66 -22.92 5.20 -316.70 -1.65 -24.56 16 18 C 0.71 22.15 8.41 179.05 1.51 23.65 16 19 O -0.61 -22.31 13.76 -3.99 -0.05 -22.37 16 20 N -0.73 -16.01 5.14 -478.52 -2.46 -18.48 16 21 C 0.13 2.35 4.55 86.38 0.39 2.74 16 22 C 0.10 1.57 1.14 -9.78 -0.01 1.56 16 23 O -0.56 -11.17 13.00 -148.98 -1.94 -13.11 16 24 C -0.14 -1.93 6.54 31.61 0.21 -1.73 16 25 C 0.04 0.54 7.63 72.49 0.55 1.09 16 26 O -0.39 -7.78 11.65 -148.98 -1.74 -9.51 16 27 C 0.02 0.31 6.46 72.48 0.47 0.78 16 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.14 5.92 5.64 -2.91 -0.02 5.90 16 30 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.15 5.23 6.19 -2.91 -0.02 5.21 16 32 H 0.41 13.68 8.59 -92.70 -0.80 12.88 16 33 H 0.41 7.08 7.30 -92.71 -0.68 6.40 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.55 8.13 -2.38 -0.02 1.53 16 36 H 0.39 6.08 7.88 -74.06 -0.58 5.50 16 37 H 0.11 1.10 7.73 -2.39 -0.02 1.08 16 38 H 0.09 1.35 8.00 -2.39 -0.02 1.33 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 42 H 0.08 1.17 7.86 -2.38 -0.02 1.15 16 Total: -1.00 -68.31 359.13 -0.48 -68.78 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.93 Total: 39.85 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.41 Total: 1.58 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -3.81 Total: -92.12 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -3.94 Total: -55.73 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -68.31 -0.48 -68.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754988283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.826 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds