Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39443 * 120.14334 * 2 1 4 4 C 1.47738 * 120.09089 * 359.97438 * 3 2 1 5 5 O 1.21473 * 120.00212 * 6.71905 * 4 3 2 6 6 O 1.34707 * 120.00467 * 186.72213 * 4 3 2 7 7 C 1.45197 * 117.00626 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47559 * 179.97438 * 7 6 4 9 9 O 1.21290 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00128 * 180.02562 * 8 7 6 11 11 C 1.37099 * 120.00053 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99757 * 359.97438 * 11 10 8 13 13 C 1.38949 * 119.99966 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99949 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47337 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46778 * 120.00358 * 15 13 11 18 18 H 1.48499 * 109.46905 * 240.00173 * 15 13 11 19 19 C 1.39671 * 119.82152 * 180.27756 * 3 2 1 20 20 C 1.38050 * 120.09654 * 359.69284 * 19 3 2 21 21 C 1.38123 * 120.28205 * 0.05366 * 20 19 3 22 22 C 1.39073 * 120.13633 * 179.72106 * 2 1 3 23 23 C 1.48370 * 120.04937 * 359.97438 * 22 2 1 24 24 C 1.39322 * 119.72733 * 172.96309 * 23 22 2 25 25 C 1.38405 * 119.06981 * 179.97438 * 24 23 22 26 26 C 1.38783 * 118.50578 * 0.02562 * 25 24 23 27 27 C 1.38247 * 119.37163 * 0.25697 * 26 25 24 28 28 N 1.31765 * 120.88659 * 359.46550 * 27 26 25 29 29 H 1.09002 * 109.47338 * 268.75025 * 1 2 3 30 30 H 1.08999 * 109.46883 * 28.74221 * 1 2 3 31 31 H 1.08991 * 109.47547 * 148.74565 * 1 2 3 32 32 H 1.08997 * 109.47451 * 300.00171 * 7 6 4 33 33 H 1.09003 * 109.47024 * 59.99891 * 7 6 4 34 34 H 0.96991 * 119.99903 * 0.02562 * 10 8 7 35 35 H 0.96997 * 119.99860 * 179.97438 * 14 13 11 36 36 H 1.08007 * 119.95362 * 179.72233 * 19 3 2 37 37 H 1.08004 * 119.86522 * 180.02562 * 20 19 3 38 38 H 1.07997 * 119.91320 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.46752 * 359.95839 * 24 23 22 40 40 H 1.08000 * 120.74428 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.31193 * 179.97438 * 26 25 24 42 42 H 1.07996 * 119.55975 * 179.72653 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.2059 0.0000 4 6 1.4738 2.4883 -0.0006 5 8 0.2653 2.4970 0.1220 6 8 2.1451 3.6482 -0.1371 7 6 1.3597 4.8694 -0.1294 8 6 2.2743 6.0560 -0.2916 9 8 3.4705 5.8890 -0.4032 10 7 1.7632 7.3030 -0.3126 11 6 2.5953 8.3825 -0.4607 12 1 3.6603 8.2337 -0.5601 13 6 2.0683 9.6680 -0.4828 14 7 0.7724 9.8490 -0.3614 15 14 3.2019 11.1388 -0.6853 16 1 4.6060 10.6693 -0.8014 17 1 2.8276 11.8870 -1.9122 18 1 3.0733 12.0292 0.4961 19 6 3.6039 1.1980 -0.0059 20 6 4.2895 -0.0002 -0.0053 21 6 3.6001 -1.1971 0.0000 22 6 2.2052 -1.2027 0.0059 23 6 1.4676 -2.4900 0.0127 24 6 2.1658 -3.6872 -0.1297 25 6 1.4641 -4.8802 -0.1209 26 6 0.0852 -4.8364 0.0298 27 6 -0.5441 -3.6124 0.1602 28 7 0.1486 -2.4915 0.1538 29 1 -0.3634 -0.0224 1.0274 30 1 -0.3633 0.9011 -0.4942 31 1 -0.3634 -0.8784 -0.5331 32 1 0.6444 4.8466 -0.9514 33 1 0.8238 4.9508 0.8163 34 1 0.8067 7.4366 -0.2229 35 1 0.4045 10.7464 -0.3765 36 1 4.1484 2.1308 -0.0104 37 1 5.3695 -0.0019 -0.0094 38 1 4.1424 -2.1310 0.0001 39 1 3.2396 -3.6844 -0.2456 40 1 1.9781 -5.8238 -0.2288 41 1 -0.4913 -5.7497 0.0403 42 1 -1.6175 -3.5745 0.2732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755015614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -40.649047 kcal Electronic energy + Delta-G solvation = -27460.799462 eV Core-core repulsion = 23371.717259 eV Total energy + Delta-G solvation = -4089.082203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01527 -40.27040 -38.81702 -37.98641 -36.11733 -33.99462 -33.69990 -33.02068 -32.16128 -31.36633 -30.09056 -28.36955 -27.13989 -24.92784 -24.49639 -23.79449 -23.14314 -21.31177 -20.60511 -19.54431 -18.11312 -18.04473 -17.19255 -16.60742 -16.51239 -16.29193 -16.05959 -15.80776 -15.35037 -15.00052 -14.68418 -14.58241 -14.17503 -14.07221 -13.92433 -13.66082 -13.33910 -13.19144 -12.91041 -12.34243 -12.28393 -12.08797 -12.04951 -11.96217 -11.86014 -11.60705 -11.27287 -11.14042 -10.38004 -10.37384 -10.34013 -10.29902 -10.13613 -10.03188 -9.60302 -9.17065 -9.00951 -8.50446 -8.48128 -8.06839 -6.48643 -3.90565 0.19321 0.73011 0.88612 1.44802 2.57144 2.71628 3.12831 3.24814 3.32354 3.38740 3.74568 3.76070 3.77684 4.11878 4.26046 4.46285 4.53716 4.62324 4.70495 4.72474 4.80541 4.94291 5.04441 5.11446 5.16765 5.25228 5.28438 5.49476 5.57040 5.63638 5.70463 5.73098 5.80439 5.90389 6.01376 6.07359 6.10719 6.15392 6.26888 6.41424 6.51123 6.65405 6.89589 7.49334 7.60255 7.89187 7.99534 8.50135 9.08602 9.41078 9.90900 10.68695 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032414 B = 0.001913 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.604631 B =14633.820040 C =15460.471893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.133 4.133 4 C 0.504 3.496 5 O -0.501 6.501 6 O -0.322 6.322 7 C 0.062 3.938 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.107 0.893 13 C 0.024 3.976 14 N -0.897 5.897 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.038 4.038 20 C -0.145 4.145 21 C -0.062 4.062 22 C -0.081 4.081 23 C 0.177 3.823 24 C -0.166 4.166 25 C -0.072 4.072 26 C -0.180 4.180 27 C 0.101 3.899 28 N -0.467 5.467 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -29.341 0.900 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 C -0.134 4.134 4 C 0.349 3.651 5 O -0.391 6.391 6 O -0.237 6.237 7 C -0.016 4.016 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.431 4.431 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.057 4.057 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.082 4.082 23 C 0.042 3.958 24 C -0.186 4.186 25 C -0.097 4.097 26 C -0.200 4.200 27 C -0.056 4.056 28 N -0.176 5.176 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.390 -28.451 0.954 28.470 hybrid contribution 0.196 0.060 -0.068 0.216 sum -0.194 -28.391 0.886 28.405 Atomic orbital electron populations 1.21724 0.88795 1.05224 1.03793 1.20202 0.97749 0.89744 0.89798 1.18970 0.93663 0.90130 1.10626 1.21148 0.85891 0.84731 0.73317 1.90743 1.14923 1.87505 1.45979 1.86580 1.40617 1.13988 1.82480 1.22754 0.93635 0.81654 1.03538 1.19318 0.88774 0.83585 0.85907 1.90553 1.15322 1.85097 1.55065 1.41709 1.10421 1.03795 1.63123 1.19776 0.92625 0.83490 1.47174 0.87556 1.25315 0.96422 0.99098 0.96984 1.69622 1.11003 1.23622 1.49506 0.85741 0.80084 0.80336 0.77835 1.19100 1.20642 1.20637 1.21789 0.92873 0.99769 0.91241 1.21047 1.00582 0.91523 1.03180 1.21417 0.92640 0.98801 0.95274 1.18226 0.92414 0.90490 1.07078 1.19713 0.89473 0.91941 0.94678 1.22061 1.01480 0.92539 1.02498 1.21535 0.94330 0.98385 0.95483 1.22191 0.95516 0.99761 1.02517 1.22915 1.00621 0.87654 0.94390 1.68144 1.07185 1.29663 1.12648 0.90547 0.89191 0.88199 0.89444 0.89440 0.77145 0.91692 0.83429 0.84594 0.85114 0.84506 0.84679 0.84795 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.82 36.01 0.28 -1.62 16 2 C 0.03 0.36 5.94 -103.86 -0.62 -0.26 16 3 C -0.13 -1.95 5.87 -105.03 -0.62 -2.56 16 4 C 0.50 8.68 7.83 34.61 0.27 8.95 16 5 O -0.50 -9.07 13.00 -19.25 -0.25 -9.32 16 6 O -0.32 -6.20 9.02 -47.19 -0.43 -6.62 16 7 C 0.06 1.20 5.95 36.00 0.21 1.42 16 8 C 0.44 10.68 7.86 -10.99 -0.09 10.59 16 9 O -0.58 -16.02 16.08 -14.11 -0.23 -16.25 16 10 N -0.55 -14.08 5.29 -10.96 -0.06 -14.14 16 11 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 12 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 14 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 15 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 C -0.04 -0.49 9.61 -39.12 -0.38 -0.86 16 20 C -0.15 -1.42 10.02 -39.69 -0.40 -1.81 16 21 C -0.06 -0.57 9.41 -39.16 -0.37 -0.94 16 22 C -0.08 -0.92 5.87 -104.95 -0.62 -1.54 16 23 C 0.18 1.83 6.65 -82.94 -0.55 1.28 16 24 C -0.17 -1.25 9.45 -39.12 -0.37 -1.62 16 25 C -0.07 -0.43 10.17 -39.32 -0.40 -0.83 16 26 C -0.18 -1.09 10.11 -39.38 -0.40 -1.49 16 27 C 0.10 0.79 11.17 -17.58 -0.20 0.60 16 28 N -0.47 -4.97 6.14 -9.78 -0.06 -5.03 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.38 5.28 -51.93 -0.27 1.10 16 31 H 0.10 1.28 5.23 -51.93 -0.27 1.00 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.15 1.94 7.62 -52.48 -0.40 1.54 16 37 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.13 0.76 6.22 -52.49 -0.33 0.43 16 39 H 0.14 0.71 6.24 -52.49 -0.33 0.38 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -33.69 362.94 -8.71 -42.40 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -4.39 Total: 9.86 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -4.47 Total: 1.34 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.61 Total: -42.64 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.90 Total: -32.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.69 -8.71 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755015614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.748 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds