Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46709 * 269.99664 * 3 2 1 5 5 H 1.48502 * 109.47131 * 29.99788 * 3 2 1 6 6 H 1.48496 * 109.47029 * 150.00142 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00459 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99763 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99889 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.50711 * 119.99604 * 179.97438 * 11 10 9 14 14 O 1.45205 * 109.46513 * 180.02562 * 13 11 10 15 15 C 1.34703 * 116.99488 * 180.02562 * 14 13 11 16 16 O 1.21476 * 120.00474 * 359.97438 * 15 14 13 17 17 C 1.47738 * 119.99771 * 179.97438 * 15 14 13 18 18 C 1.39670 * 120.50645 * 359.72208 * 17 15 14 19 19 N 1.31692 * 120.82227 * 180.27761 * 18 17 15 20 20 C 1.31818 * 122.01904 * 359.97438 * 19 18 17 21 21 C 1.39404 * 120.92646 * 0.02562 * 20 19 18 22 22 C 1.48415 * 120.46403 * 179.97438 * 21 20 19 23 23 C 1.39326 * 120.11925 * 179.74233 * 22 21 20 24 24 C 1.38026 * 119.87680 * 179.77195 * 23 22 21 25 25 C 1.38323 * 120.11737 * 0.52644 * 24 23 22 26 26 C 1.38320 * 120.24469 * 359.70554 * 25 24 23 27 27 C 1.38020 * 120.11769 * 0.04045 * 26 25 24 28 28 C 1.39491 * 119.07194 * 359.97438 * 21 20 19 29 29 H 0.96999 * 119.99828 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46857 * 60.00238 * 9 7 2 31 31 H 1.08998 * 109.46691 * 300.00334 * 9 7 2 32 32 H 0.97002 * 120.00027 * 0.02562 * 10 9 7 33 33 H 1.08994 * 109.46892 * 60.00580 * 13 11 10 34 34 H 1.08995 * 109.47118 * 299.99899 * 13 11 10 35 35 H 1.07992 * 119.59372 * 0.24511 * 18 17 15 36 36 H 1.08007 * 119.53427 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.05969 * 359.97438 * 23 22 21 38 38 H 1.07999 * 119.93596 * 180.27514 * 24 23 22 39 39 H 1.07996 * 119.87197 * 179.72750 * 25 24 23 40 40 H 1.07996 * 119.93690 * 180.02562 * 26 25 24 41 41 H 1.08004 * 120.05975 * 180.02562 * 27 26 25 42 42 H 1.08001 * 120.91866 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3249 -2.8215 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8272 -4.2424 -0.0002 14 8 7.2793 -4.2423 -0.0009 15 6 7.8908 -5.4426 -0.0009 16 8 7.2292 -6.4614 0.0001 17 6 9.3661 -5.5199 -0.0022 18 6 10.1372 -4.3553 -0.0092 19 7 11.4526 -4.4170 -0.0158 20 6 12.0984 -5.5662 -0.0156 21 6 11.4069 -6.7766 -0.0089 22 6 12.1444 -8.0645 -0.0094 23 6 11.4461 -9.2701 0.0028 24 6 12.1370 -10.4650 -0.0025 25 6 13.5202 -10.4669 -0.0088 26 6 14.2185 -9.2729 -0.0161 27 6 13.5377 -8.0724 -0.0161 28 6 10.0121 -6.7603 -0.0017 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 3.3695 -3.3125 0.0001 33 1 5.4632 -4.7569 -0.8895 34 1 5.4647 -4.7555 0.8905 35 1 9.6486 -3.3922 -0.0097 36 1 13.1784 -5.5699 -0.0216 37 1 10.3661 -9.2696 0.0130 38 1 11.5966 -11.4000 0.0024 39 1 14.0568 -11.4041 -0.0085 40 1 15.2985 -9.2802 -0.0214 41 1 14.0839 -7.1407 -0.0222 42 1 9.4464 -7.6803 0.0032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758105178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -56.767520 kcal Electronic energy + Delta-G solvation = -26600.639060 eV Core-core repulsion = 22510.857907 eV Total energy + Delta-G solvation = -4089.781152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27674 -40.31860 -39.21531 -38.81407 -36.57108 -34.41975 -33.98197 -32.94413 -32.45637 -31.44293 -29.89469 -29.40299 -27.32399 -25.40787 -24.65276 -23.05889 -22.14039 -22.06976 -20.99367 -20.18113 -18.70669 -17.91510 -17.67810 -17.01026 -16.81868 -16.77361 -16.46819 -15.98713 -15.49902 -15.14187 -14.98767 -14.90607 -14.39200 -14.30157 -14.22103 -14.05035 -13.44689 -13.35053 -13.27581 -13.13687 -12.77610 -12.67822 -12.40442 -12.13436 -11.88794 -11.51443 -11.11692 -11.04965 -10.92547 -10.79437 -10.78490 -10.11534 -10.02125 -9.95705 -9.57017 -9.47002 -9.40644 -8.84109 -8.70062 -8.31012 -6.26156 -4.29495 -0.09132 0.27998 0.88760 1.28944 2.11733 2.19101 2.97124 3.16815 3.24058 3.31018 3.38685 3.53430 3.67570 3.87073 3.98883 4.21793 4.29171 4.30162 4.31155 4.44471 4.50987 4.65147 4.74836 4.86308 4.94232 5.03399 5.07189 5.08759 5.10675 5.16201 5.39765 5.45105 5.49491 5.56537 5.88884 5.99998 6.01091 6.05626 6.08790 6.43293 6.69888 6.98095 7.04646 7.28854 7.33745 7.43897 8.01043 8.37819 8.63943 8.76235 9.32767 10.85564 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.001668 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.704094 B =16781.826740 C =17593.072862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.535 6.535 13 C 0.051 3.949 14 O -0.323 6.323 15 C 0.515 3.485 16 O -0.503 6.503 17 C -0.170 4.170 18 C 0.164 3.836 19 N -0.483 5.483 20 C 0.141 3.859 21 C -0.110 4.110 22 C -0.042 4.042 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.109 4.109 28 C -0.004 4.004 29 H 0.268 0.732 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.399 0.601 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.762 -21.083 0.011 34.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.237 6.237 15 C 0.359 3.641 16 O -0.392 6.392 17 C -0.173 4.173 18 C 0.007 3.993 19 N -0.190 5.190 20 C -0.016 4.016 21 C -0.112 4.112 22 C -0.043 4.043 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.030 4.030 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.233 0.767 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 28.378 -19.756 0.009 34.578 hybrid contribution -0.746 -0.425 -0.019 0.859 sum 27.633 -20.181 -0.010 34.218 Atomic orbital electron populations 1.69875 1.06223 1.27531 1.49086 1.24785 0.94797 0.99183 0.93754 0.86820 0.80583 0.83197 0.79119 1.19782 1.20819 1.18451 1.21063 0.88326 0.95353 1.53762 0.90118 1.19565 0.95380 0.77881 0.97121 1.46063 1.04803 1.11599 1.72414 1.19881 0.83770 0.89308 0.78526 1.90706 1.55296 1.45607 1.49690 1.22894 0.77027 0.97611 1.05143 1.86569 1.22360 1.31385 1.83436 1.20848 0.88495 0.81759 0.73028 1.90853 1.66470 1.36032 1.45812 1.20068 0.90802 0.95763 1.10663 1.23512 0.88957 0.98661 0.88179 1.67854 1.09756 1.28539 1.12872 1.23260 1.00912 0.86627 0.90805 1.19679 0.92999 0.94352 1.04167 1.18534 0.93066 0.91206 1.01475 1.21293 1.00257 0.91707 0.99405 1.21141 0.94463 0.97988 0.99699 1.21288 0.94407 0.98324 0.99414 1.21118 1.00164 0.92220 0.99899 1.21215 0.92957 0.98658 0.99838 1.21787 0.93378 0.97638 0.90169 0.92167 0.95361 0.95830 0.76671 0.88004 0.88006 0.80265 0.81756 0.85481 0.85554 0.85803 0.85564 0.85452 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.64 9.83 -34.44 -0.34 -14.98 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.29 4.50 -5.19 -0.02 5.26 16 10 N -0.70 -13.44 5.55 -61.47 -0.34 -13.79 16 11 C 0.50 9.19 7.91 -10.98 -0.09 9.10 16 12 O -0.54 -11.90 16.50 -14.10 -0.23 -12.13 16 13 C 0.05 0.70 5.95 36.01 0.21 0.91 16 14 O -0.32 -4.63 9.03 -47.18 -0.43 -5.06 16 15 C 0.52 6.66 7.90 34.61 0.27 6.93 16 16 O -0.50 -7.11 16.20 -19.25 -0.31 -7.43 16 17 C -0.17 -1.86 5.89 -104.88 -0.62 -2.48 16 18 C 0.16 1.79 10.78 -17.08 -0.18 1.61 16 19 N -0.48 -5.09 10.33 -12.63 -0.13 -5.22 16 20 C 0.14 1.17 10.59 -17.12 -0.18 0.99 16 21 C -0.11 -0.91 5.89 -104.80 -0.62 -1.53 16 22 C -0.04 -0.31 5.88 -104.89 -0.62 -0.92 16 23 C -0.11 -0.75 9.44 -39.25 -0.37 -1.12 16 24 C -0.11 -0.67 10.03 -39.63 -0.40 -1.07 16 25 C -0.12 -0.61 10.04 -39.52 -0.40 -1.01 16 26 C -0.12 -0.61 10.03 -39.63 -0.40 -1.01 16 27 C -0.11 -0.65 9.44 -39.26 -0.37 -1.02 16 28 C 0.00 -0.04 9.07 -38.51 -0.35 -0.39 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 31 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 32 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.18 1.93 7.61 -52.49 -0.40 1.53 16 36 H 0.17 0.86 6.21 -52.48 -0.33 0.54 16 37 H 0.13 0.75 6.27 -52.49 -0.33 0.43 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.12 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.50 6.23 -52.48 -0.33 0.17 16 42 H 0.15 1.25 5.99 -52.49 -0.31 0.94 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -34.05 370.43 -8.81 -42.86 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.49 Total: 2.69 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.56 Total: 1.37 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.30 Total: -44.26 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.97 Total: -24.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.05 -8.81 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758105178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds