Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46709 * 269.99664 * 3 2 1 5 5 H 1.48502 * 109.47131 * 29.99788 * 3 2 1 6 6 H 1.48496 * 109.47029 * 150.00142 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00459 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99763 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99889 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.50711 * 119.99604 * 179.97438 * 11 10 9 14 14 O 1.45205 * 109.46513 * 180.02562 * 13 11 10 15 15 C 1.34703 * 116.99488 * 180.02562 * 14 13 11 16 16 O 1.21476 * 120.00474 * 359.97438 * 15 14 13 17 17 C 1.47738 * 119.99771 * 179.97438 * 15 14 13 18 18 C 1.39670 * 120.50645 * 359.72208 * 17 15 14 19 19 N 1.31692 * 120.82227 * 180.27761 * 18 17 15 20 20 C 1.31818 * 122.01904 * 359.97438 * 19 18 17 21 21 C 1.39404 * 120.92646 * 0.02562 * 20 19 18 22 22 C 1.48415 * 120.46403 * 179.97438 * 21 20 19 23 23 C 1.39326 * 120.11925 * 179.74233 * 22 21 20 24 24 C 1.38026 * 119.87680 * 179.77195 * 23 22 21 25 25 C 1.38323 * 120.11737 * 0.52644 * 24 23 22 26 26 C 1.38320 * 120.24469 * 359.70554 * 25 24 23 27 27 C 1.38020 * 120.11769 * 0.04045 * 26 25 24 28 28 C 1.39491 * 119.07194 * 359.97438 * 21 20 19 29 29 H 0.96999 * 119.99828 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46857 * 60.00238 * 9 7 2 31 31 H 1.08998 * 109.46691 * 300.00334 * 9 7 2 32 32 H 0.97002 * 120.00027 * 0.02562 * 10 9 7 33 33 H 1.08994 * 109.46892 * 60.00580 * 13 11 10 34 34 H 1.08995 * 109.47118 * 299.99899 * 13 11 10 35 35 H 1.07992 * 119.59372 * 0.24511 * 18 17 15 36 36 H 1.08007 * 119.53427 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.05969 * 359.97438 * 23 22 21 38 38 H 1.07999 * 119.93596 * 180.27514 * 24 23 22 39 39 H 1.07996 * 119.87197 * 179.72750 * 25 24 23 40 40 H 1.07996 * 119.93690 * 180.02562 * 26 25 24 41 41 H 1.08004 * 120.05975 * 180.02562 * 27 26 25 42 42 H 1.08001 * 120.91866 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3249 -2.8215 -0.0009 12 8 6.1131 -1.8997 -0.0014 13 6 5.8272 -4.2424 -0.0002 14 8 7.2793 -4.2423 -0.0009 15 6 7.8908 -5.4426 -0.0009 16 8 7.2292 -6.4614 0.0001 17 6 9.3661 -5.5199 -0.0022 18 6 10.1372 -4.3553 -0.0092 19 7 11.4526 -4.4170 -0.0158 20 6 12.0984 -5.5662 -0.0156 21 6 11.4069 -6.7766 -0.0089 22 6 12.1444 -8.0645 -0.0094 23 6 11.4461 -9.2701 0.0028 24 6 12.1370 -10.4650 -0.0025 25 6 13.5202 -10.4669 -0.0088 26 6 14.2185 -9.2729 -0.0161 27 6 13.5377 -8.0724 -0.0161 28 6 10.0121 -6.7603 -0.0017 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 3.3695 -3.3125 0.0001 33 1 5.4632 -4.7569 -0.8895 34 1 5.4647 -4.7555 0.8905 35 1 9.6486 -3.3922 -0.0097 36 1 13.1784 -5.5699 -0.0216 37 1 10.3661 -9.2696 0.0130 38 1 11.5966 -11.4000 0.0024 39 1 14.0568 -11.4041 -0.0085 40 1 15.2985 -9.2802 -0.0214 41 1 14.0839 -7.1407 -0.0222 42 1 9.4464 -7.6803 0.0032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758105178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -77.459211 kcal Electronic energy + Delta-G solvation = -26601.536319 eV Core-core repulsion = 22510.857907 eV Total energy + Delta-G solvation = -4090.678411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14399 -41.22582 -40.37164 -39.63221 -37.68095 -36.20934 -34.58635 -34.46775 -33.69480 -31.87840 -31.15739 -30.23117 -28.90352 -26.25658 -25.29166 -24.20303 -23.47325 -22.61685 -21.83496 -21.72935 -19.63777 -19.20193 -18.71730 -18.16178 -17.91678 -17.57499 -17.33216 -17.22025 -16.80322 -16.32660 -16.20719 -15.85298 -15.39313 -15.27550 -14.93921 -14.72026 -14.66271 -14.58880 -14.35770 -14.00163 -13.89584 -13.82381 -13.70349 -13.42469 -13.08781 -12.71253 -12.35140 -12.03321 -11.99492 -11.93504 -11.91898 -11.66964 -11.42549 -10.99262 -10.92394 -10.84195 -10.70315 -10.04475 -9.87817 -9.23318 -8.40098 -6.47703 -0.80074 -0.40548 0.48078 0.72047 1.04874 1.28651 1.33794 1.36858 1.47969 1.51099 2.28120 2.39676 2.52246 2.95495 3.00278 3.13139 3.31335 3.53832 3.58316 3.61987 3.64919 3.81583 4.02319 4.03254 4.07228 4.16105 4.31602 4.35109 4.53276 4.56923 4.74405 4.80904 4.84583 4.97419 5.00734 5.05436 5.13248 5.23703 5.31351 5.39359 5.54426 5.56893 5.60918 6.04256 6.05145 6.36575 6.52411 6.65946 6.71025 7.11234 7.26723 8.74410 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.001668 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.704094 B =16781.826740 C =17593.072862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.232 3.768 10 N -0.696 5.696 11 C 0.505 3.495 12 O -0.576 6.576 13 C 0.059 3.941 14 O -0.337 6.337 15 C 0.521 3.479 16 O -0.517 6.517 17 C -0.181 4.181 18 C 0.155 3.845 19 N -0.500 5.500 20 C 0.143 3.857 21 C -0.101 4.101 22 C -0.062 4.062 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.008 4.008 29 H 0.272 0.728 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.173 0.827 36 H 0.196 0.804 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.352 -22.464 -0.024 37.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.291 3.709 12 O -0.456 6.456 13 C -0.018 4.018 14 O -0.252 6.252 15 C 0.366 3.634 16 O -0.407 6.407 17 C -0.184 4.184 18 C -0.002 4.002 19 N -0.207 5.207 20 C -0.013 4.013 21 C -0.103 4.103 22 C -0.062 4.062 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.033 4.033 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.190 0.810 36 H 0.213 0.787 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 30.965 -21.175 -0.027 37.513 hybrid contribution -1.449 -0.168 -0.008 1.458 sum 29.517 -21.343 -0.034 36.425 Atomic orbital electron populations 1.69979 1.07718 1.28641 1.50551 1.25582 0.95514 1.02655 0.93542 0.85874 0.79328 0.79335 0.79472 1.19002 1.19935 1.18254 1.21283 0.89847 0.94718 1.52834 0.92013 1.19176 0.93420 0.80323 0.96204 1.45845 1.05848 1.10365 1.72719 1.20525 0.82748 0.90917 0.76721 1.90687 1.56143 1.47477 1.51304 1.22817 0.77216 0.94178 1.07575 1.86561 1.22488 1.32432 1.83759 1.21077 0.89066 0.80991 0.72289 1.90838 1.66880 1.36205 1.46807 1.19989 0.89633 0.96495 1.12320 1.23420 0.89369 0.98458 0.88912 1.67875 1.09501 1.29743 1.13610 1.23762 1.02278 0.85913 0.89371 1.19818 0.92557 0.95071 1.02827 1.18589 0.93794 0.90654 1.03205 1.21460 1.00624 0.92173 0.99766 1.21397 0.95082 0.98248 0.99636 1.21639 0.94355 0.99425 0.98199 1.21456 1.01434 0.91897 0.99185 1.21501 0.92480 0.99960 0.99062 1.21927 0.94066 0.97267 0.89996 0.91833 0.96421 0.96545 0.75042 0.85482 0.85502 0.80950 0.78709 0.85353 0.84140 0.83778 0.83332 0.83558 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 7 C -0.55 -29.62 9.83 25.60 0.25 -29.36 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.03 4.50 85.64 0.39 11.41 16 10 N -0.70 -26.44 5.55 -466.79 -2.59 -29.03 16 11 C 0.51 18.16 7.91 87.66 0.69 18.85 16 12 O -0.58 -25.62 16.50 15.78 0.26 -25.35 16 13 C 0.06 1.53 5.95 71.24 0.42 1.96 16 14 O -0.34 -9.48 9.03 -49.75 -0.45 -9.93 16 15 C 0.52 13.19 7.90 70.33 0.56 13.75 16 16 O -0.52 -14.15 16.20 19.91 0.32 -13.82 16 17 C -0.18 -3.94 5.89 -20.03 -0.12 -4.06 16 18 C 0.16 3.41 10.78 85.06 0.92 4.32 16 19 N -0.50 -10.20 10.33 -193.87 -2.00 -12.20 16 20 C 0.14 2.15 10.59 84.98 0.90 3.05 16 21 C -0.10 -1.55 5.89 -19.98 -0.12 -1.66 16 22 C -0.06 -0.80 5.88 -20.04 -0.12 -0.92 16 23 C -0.12 -1.53 9.44 22.48 0.21 -1.32 16 24 C -0.13 -1.25 10.03 22.24 0.22 -1.03 16 25 C -0.12 -0.95 10.04 22.31 0.22 -0.73 16 26 C -0.12 -0.94 10.03 22.24 0.22 -0.72 16 27 C -0.11 -1.06 9.44 22.48 0.21 -0.85 16 28 C -0.01 -0.14 9.07 22.96 0.21 0.07 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 31 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 32 H 0.41 13.33 8.32 -92.71 -0.77 12.56 16 33 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.17 3.87 7.61 -2.91 -0.02 3.85 16 36 H 0.20 1.52 6.21 -2.91 -0.02 1.50 16 37 H 0.13 1.45 6.27 -2.91 -0.02 1.43 16 38 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.14 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.15 0.43 8.06 -2.91 -0.02 0.40 16 41 H 0.15 0.68 6.23 -2.91 -0.02 0.67 16 42 H 0.16 2.55 5.99 -2.91 -0.02 2.53 16 Total: -1.00 -73.29 370.43 3.53 -69.77 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.26 Total: 15.19 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.54 Total: 14.77 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -4.29 Total: -95.85 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: 0.13 Total: -49.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -73.29 3.53 -69.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758105178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.693 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds