Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08998 * 109.47040 * 55.00984 * 3 2 1 5 5 C 1.53004 * 109.46815 * 175.00229 * 3 2 1 6 6 O 1.42907 * 109.47015 * 55.00072 * 5 3 2 7 7 N 1.46497 * 109.47536 * 294.99988 * 3 2 1 8 8 C 1.34777 * 120.00281 * 154.99917 * 7 3 2 9 9 O 1.21370 * 119.99576 * 0.02562 * 8 7 3 10 10 C 1.49303 * 120.00131 * 180.02562 * 8 7 3 11 11 O 1.21399 * 119.99968 * 0.02562 * 10 8 7 12 12 N 1.34776 * 119.99768 * 180.02562 * 10 8 7 13 13 C 1.39819 * 119.99682 * 185.61401 * 12 10 8 14 14 C 1.38796 * 120.08682 * 34.09704 * 13 12 10 15 15 C 1.38144 * 120.01480 * 179.97438 * 14 13 12 16 16 C 1.38579 * 120.18728 * 0.02562 * 15 14 13 17 17 F 1.35099 * 119.91699 * 180.02562 * 16 15 14 18 18 C 1.38345 * 120.17380 * 0.02562 * 16 15 14 19 19 C 1.38744 * 119.97992 * 359.97438 * 18 16 15 20 20 O 1.35750 * 120.09177 * 180.29604 * 19 18 16 21 21 C 1.34790 * 117.00324 * 354.20437 * 20 19 18 22 22 H 1.08000 * 119.99743 * 354.52959 * 21 20 19 23 23 C 1.38650 * 120.00131 * 174.52284 * 21 20 19 24 24 N 1.31562 * 120.00098 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00169 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46888 * 60.00232 * 25 23 21 27 27 H 1.48498 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46721 * 300.00497 * 25 23 21 29 29 H 1.08997 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46761 * 299.99440 * 1 2 3 31 31 H 1.08993 * 109.47386 * 59.99684 * 1 2 3 32 32 H 1.08999 * 109.46361 * 240.00455 * 2 1 3 33 33 H 1.08993 * 109.47386 * 120.00315 * 2 1 3 34 34 H 1.08994 * 109.47451 * 175.00149 * 5 3 2 35 35 H 1.09003 * 109.47137 * 295.00628 * 5 3 2 36 36 H 0.96703 * 113.99802 * 179.97438 * 6 5 3 37 37 H 0.97007 * 119.99904 * 335.00443 * 7 3 2 38 38 H 0.96993 * 120.00513 * 5.60347 * 12 10 8 39 39 H 1.08000 * 119.99222 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.90589 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.01382 * 180.02562 * 18 16 15 42 42 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 4.1293 0.6404 -0.9123 7 7 1.6524 2.0975 -1.2517 8 6 1.5255 3.4385 -1.2995 9 8 1.7328 4.1034 -0.3055 10 6 1.1300 4.1060 -2.5751 11 8 0.9222 3.4409 -3.5692 12 7 1.0037 5.4470 -2.6229 13 6 0.5206 6.0627 -3.7815 14 6 -0.4392 5.4286 -4.5580 15 6 -0.9158 6.0385 -5.7022 16 6 -0.4379 7.2836 -6.0789 17 9 -0.9082 7.8753 -7.1986 18 6 0.5196 7.9222 -5.3113 19 6 1.0032 7.3161 -4.1607 20 8 1.9384 7.9433 -3.4026 21 6 2.4436 9.0965 -3.8840 22 1 2.1682 9.4360 -4.8715 23 6 3.3166 9.8470 -3.1113 24 7 3.6523 9.4332 -1.9084 25 14 4.0161 11.4456 -3.7781 26 1 2.9055 12.3845 -4.0789 27 1 4.9171 12.0521 -2.7655 28 1 4.7820 11.1706 -5.0203 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9355 2.4654 0.0366 35 1 3.8499 1.0376 1.0959 36 1 5.0951 0.5963 -0.8943 37 1 1.4870 1.5661 -2.0463 38 1 1.2476 5.9849 -1.8536 39 1 -0.8136 4.4581 -4.2677 40 1 -1.6630 5.5437 -6.3049 41 1 0.8900 8.8926 -5.6070 42 1 4.2634 9.9581 -1.3679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761008106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -166.223760 kcal Electronic energy + Delta-G solvation = -29373.740567 eV Core-core repulsion = 24848.443811 eV Total energy + Delta-G solvation = -4525.296756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.32007 -40.77547 -39.54912 -38.42066 -37.41368 -36.40877 -35.46481 -34.22355 -32.47104 -32.34523 -29.59003 -29.07918 -28.53799 -25.61071 -24.94870 -23.69099 -22.41722 -21.64034 -20.81901 -20.12432 -18.61930 -18.40878 -17.72200 -17.57500 -16.91724 -16.20161 -16.04778 -15.61461 -15.35878 -15.28791 -15.00835 -14.68132 -14.51118 -14.32934 -14.12773 -13.84549 -13.76676 -13.58060 -13.51305 -13.20442 -12.80595 -12.56451 -12.39967 -12.23595 -11.71159 -11.67398 -11.49103 -11.41878 -11.28613 -11.10157 -10.99498 -10.77371 -10.57846 -10.23662 -9.87641 -9.76550 -9.33853 -9.26965 -8.99316 -7.98189 -7.22158 -6.62544 -4.21346 1.35658 1.96721 2.04988 2.49419 3.06201 3.06967 3.09900 3.39041 3.78304 3.84211 4.04786 4.25755 4.41754 4.66349 4.71881 4.78628 4.87210 4.92537 5.03411 5.11925 5.22638 5.36268 5.42600 5.48319 5.58066 5.67714 5.68817 5.85282 5.93079 6.02659 6.08673 6.24354 6.40512 6.64397 6.82507 6.83376 6.86616 7.06677 7.19077 7.38284 7.51733 7.65630 7.79468 7.93087 8.25015 8.81462 9.40794 10.53490 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003253 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.155147 B = 8605.434997 C =10712.125473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.146 3.854 4 H 0.104 0.896 5 C 0.060 3.940 6 O -0.568 6.568 7 N -0.690 5.690 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.500 3.500 11 O -0.518 6.518 12 N -0.614 5.614 13 C 0.049 3.951 14 C -0.043 4.043 15 C -0.231 4.231 16 C 0.137 3.863 17 F -0.150 7.150 18 C -0.258 4.258 19 C 0.163 3.837 20 O -0.162 6.162 21 C -0.395 4.395 22 H 0.095 0.905 23 C 0.044 3.956 24 N -0.852 5.852 25 Si 0.944 3.056 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.268 1.268 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.380 0.620 37 H 0.414 0.586 38 H 0.426 0.574 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -15.049 3.936 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.163 4.163 3 C 0.042 3.958 4 H 0.122 0.878 5 C -0.019 4.019 6 O -0.374 6.374 7 N -0.344 5.344 8 C 0.292 3.708 9 O -0.390 6.390 10 C 0.282 3.718 11 O -0.395 6.395 12 N -0.259 5.259 13 C -0.045 4.045 14 C -0.064 4.064 15 C -0.251 4.251 16 C 0.117 3.883 17 F -0.128 7.128 18 C -0.279 4.279 19 C 0.106 3.894 20 O -0.064 6.064 21 C -0.471 4.471 22 H 0.113 0.887 23 C -0.162 4.162 24 N -0.485 5.485 25 Si 0.768 3.232 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.193 1.193 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.251 0.749 38 H 0.265 0.735 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.246 -15.067 4.257 15.990 hybrid contribution 1.015 1.133 -0.393 1.571 sum -2.231 -13.934 3.864 14.631 Atomic orbital electron populations 1.21822 0.95269 1.01884 1.02389 1.21708 0.96232 0.94601 1.03797 1.21244 0.92809 0.94192 0.87581 0.87790 1.22660 0.93844 0.95067 0.90307 1.86453 1.25469 1.72031 1.53438 1.45694 1.68318 1.06058 1.14346 1.20109 0.78490 0.83299 0.88871 1.90799 1.48423 1.63969 1.35858 1.20003 0.79743 0.83390 0.88707 1.90745 1.49368 1.64028 1.35337 1.42806 1.60805 1.05965 1.16346 1.16801 1.01902 0.93179 0.92649 1.20448 0.93254 0.99126 0.93535 1.20419 1.07439 0.96084 1.01182 1.17470 0.95354 0.92018 0.83451 1.91420 1.87393 1.83983 1.50032 1.20868 1.04091 1.03913 0.99053 1.18796 0.89018 0.91178 0.90372 1.83940 1.45006 1.35346 1.42155 1.21323 1.26348 0.97714 1.01697 0.88725 1.25332 0.96341 0.99269 0.95234 1.70014 1.31607 1.38158 1.08749 0.85733 0.79066 0.79792 0.78658 1.19264 1.20117 1.19308 0.92384 0.92581 0.92317 0.90241 0.90395 0.92628 0.92566 0.77346 0.74894 0.73507 0.84685 0.85724 0.83762 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.80 37.16 0.36 -0.82 16 2 C -0.13 -0.98 5.19 -26.73 -0.14 -1.11 16 3 C 0.15 1.46 2.37 -67.93 -0.16 1.30 16 4 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 5 C 0.06 0.58 6.85 37.16 0.25 0.83 16 6 O -0.57 -5.37 12.83 -35.23 -0.45 -5.82 16 7 N -0.69 -8.44 4.47 -54.28 -0.24 -8.68 16 8 C 0.51 8.00 7.85 -11.65 -0.09 7.91 16 9 O -0.52 -9.14 16.15 5.48 0.09 -9.05 16 10 C 0.50 8.84 7.61 -11.65 -0.09 8.75 16 11 O -0.52 -9.54 14.23 5.45 0.08 -9.46 16 12 N -0.61 -11.93 5.18 -10.17 -0.05 -11.98 16 13 C 0.05 1.01 6.28 -83.52 -0.52 0.49 16 14 C -0.04 -0.81 8.65 -39.41 -0.34 -1.15 16 15 C -0.23 -4.14 10.02 -39.49 -0.40 -4.54 16 16 C 0.14 2.67 7.29 -39.42 -0.29 2.38 16 17 F -0.15 -2.79 17.26 2.25 0.04 -2.75 16 18 C -0.26 -5.56 9.11 -39.35 -0.36 -5.92 16 19 C 0.16 3.76 6.67 -38.90 -0.26 3.50 16 20 O -0.16 -4.29 9.30 0.16 0.00 -4.29 16 21 C -0.40 -10.44 9.44 30.88 0.29 -10.15 16 22 H 0.10 2.33 5.30 -52.49 -0.28 2.05 16 23 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 24 N -0.85 -23.60 13.67 55.48 0.76 -22.84 16 25 Si 0.94 19.68 29.55 -169.99 -5.02 14.66 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.38 2.15 9.12 45.56 0.42 2.56 16 37 H 0.41 4.82 8.07 -40.82 -0.33 4.49 16 38 H 0.43 8.54 8.03 -40.82 -0.33 8.21 16 39 H 0.14 2.33 6.48 -52.49 -0.34 1.99 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.14 3.09 5.71 -52.49 -0.30 2.79 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -30.82 369.41 -5.10 -35.92 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -4.03 Total: 16.20 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.83 Total: 2.53 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.46 Total: -43.51 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.28 Total: -28.62 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.82 -5.10 -35.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761008106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.306 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds