Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46855 * 2 1 4 4 H 1.08998 * 109.47040 * 55.00984 * 3 2 1 5 5 C 1.53004 * 109.46815 * 175.00229 * 3 2 1 6 6 O 1.42907 * 109.47015 * 55.00072 * 5 3 2 7 7 N 1.46497 * 109.47536 * 294.99988 * 3 2 1 8 8 C 1.34777 * 120.00281 * 154.99917 * 7 3 2 9 9 O 1.21370 * 119.99576 * 0.02562 * 8 7 3 10 10 C 1.49303 * 120.00131 * 180.02562 * 8 7 3 11 11 O 1.21399 * 119.99968 * 0.02562 * 10 8 7 12 12 N 1.34776 * 119.99768 * 180.02562 * 10 8 7 13 13 C 1.39819 * 119.99682 * 185.61401 * 12 10 8 14 14 C 1.38796 * 120.08682 * 34.09704 * 13 12 10 15 15 C 1.38144 * 120.01480 * 179.97438 * 14 13 12 16 16 C 1.38579 * 120.18728 * 0.02562 * 15 14 13 17 17 F 1.35099 * 119.91699 * 180.02562 * 16 15 14 18 18 C 1.38345 * 120.17380 * 0.02562 * 16 15 14 19 19 C 1.38744 * 119.97992 * 359.97438 * 18 16 15 20 20 O 1.35750 * 120.09177 * 180.29604 * 19 18 16 21 21 C 1.34790 * 117.00324 * 354.20437 * 20 19 18 22 22 H 1.08000 * 119.99743 * 354.52959 * 21 20 19 23 23 C 1.38650 * 120.00131 * 174.52284 * 21 20 19 24 24 N 1.31562 * 120.00098 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00169 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46888 * 60.00232 * 25 23 21 27 27 H 1.48498 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46721 * 300.00497 * 25 23 21 29 29 H 1.08997 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46761 * 299.99440 * 1 2 3 31 31 H 1.08993 * 109.47386 * 59.99684 * 1 2 3 32 32 H 1.08999 * 109.46361 * 240.00455 * 2 1 3 33 33 H 1.08993 * 109.47386 * 120.00315 * 2 1 3 34 34 H 1.08994 * 109.47451 * 175.00149 * 5 3 2 35 35 H 1.09003 * 109.47137 * 295.00628 * 5 3 2 36 36 H 0.96703 * 113.99802 * 179.97438 * 6 5 3 37 37 H 0.97007 * 119.99904 * 335.00443 * 7 3 2 38 38 H 0.96993 * 120.00513 * 5.60347 * 12 10 8 39 39 H 1.08000 * 119.99222 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.90589 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.01382 * 180.02562 * 18 16 15 42 42 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 4.1293 0.6404 -0.9123 7 7 1.6524 2.0975 -1.2517 8 6 1.5255 3.4385 -1.2995 9 8 1.7328 4.1034 -0.3055 10 6 1.1300 4.1060 -2.5751 11 8 0.9222 3.4409 -3.5692 12 7 1.0037 5.4470 -2.6229 13 6 0.5206 6.0627 -3.7815 14 6 -0.4392 5.4286 -4.5580 15 6 -0.9158 6.0385 -5.7022 16 6 -0.4379 7.2836 -6.0789 17 9 -0.9082 7.8753 -7.1986 18 6 0.5196 7.9222 -5.3113 19 6 1.0032 7.3161 -4.1607 20 8 1.9384 7.9433 -3.4026 21 6 2.4436 9.0965 -3.8840 22 1 2.1682 9.4360 -4.8715 23 6 3.3166 9.8470 -3.1113 24 7 3.6523 9.4332 -1.9084 25 14 4.0161 11.4456 -3.7781 26 1 2.9055 12.3845 -4.0789 27 1 4.9171 12.0521 -2.7655 28 1 4.7820 11.1706 -5.0203 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9355 2.4654 0.0366 35 1 3.8499 1.0376 1.0959 36 1 5.0951 0.5963 -0.8943 37 1 1.4870 1.5661 -2.0463 38 1 1.2476 5.9849 -1.8536 39 1 -0.8136 4.4581 -4.2677 40 1 -1.6630 5.5437 -6.3049 41 1 0.8900 8.8926 -5.6070 42 1 4.2634 9.9581 -1.3679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761008106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -190.111879 kcal Electronic energy + Delta-G solvation = -29374.776434 eV Core-core repulsion = 24848.443811 eV Total energy + Delta-G solvation = -4526.332622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86559 -42.18004 -41.01597 -39.87152 -38.40930 -38.08099 -36.39928 -35.65269 -34.35777 -33.28854 -31.22404 -30.34532 -29.69469 -27.48325 -26.26086 -24.52055 -23.97153 -23.12704 -21.77907 -21.45177 -20.20947 -20.03126 -19.18720 -18.62113 -18.28656 -17.48682 -17.40683 -17.03733 -16.81745 -16.72173 -16.52374 -16.01534 -15.74253 -15.59991 -15.47331 -15.28597 -15.10024 -14.90823 -14.74716 -14.55985 -14.04231 -13.85424 -13.58227 -13.46602 -13.25906 -13.10066 -12.83738 -12.59832 -12.37291 -12.35597 -12.17896 -12.00182 -11.79087 -11.71528 -11.32082 -11.00225 -10.86103 -10.71524 -10.32312 -9.63595 -8.88686 -8.53254 -6.21156 -0.13095 0.39974 0.48807 1.20928 1.35608 1.44796 1.50575 2.01665 2.11947 2.51545 2.60595 3.01951 3.10913 3.30805 3.35912 3.39570 3.70986 3.88241 3.98006 4.13465 4.22663 4.27503 4.43441 4.48373 4.49989 4.61712 4.74046 4.82181 4.89063 4.95036 5.03956 5.15591 5.16768 5.20707 5.27818 5.30422 5.36319 5.42178 5.83951 5.88893 6.00089 6.24998 6.61527 6.81700 6.85444 6.90026 7.57471 8.66874 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003253 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.155147 B = 8605.434997 C =10712.125473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C 0.138 3.862 4 H 0.101 0.899 5 C 0.063 3.937 6 O -0.580 6.580 7 N -0.671 5.671 8 C 0.515 3.485 9 O -0.541 6.541 10 C 0.503 3.497 11 O -0.523 6.523 12 N -0.623 5.623 13 C 0.046 3.954 14 C -0.042 4.042 15 C -0.201 4.201 16 C 0.133 3.867 17 F -0.141 7.141 18 C -0.264 4.264 19 C 0.136 3.864 20 O -0.203 6.203 21 C -0.419 4.419 22 H 0.103 0.897 23 C -0.010 4.010 24 N -0.905 5.905 25 Si 1.014 2.986 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.260 1.260 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.028 0.972 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.419 0.581 38 H 0.421 0.579 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.138 0.862 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 -16.891 2.983 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.119 0.881 5 C -0.016 4.016 6 O -0.388 6.388 7 N -0.324 5.324 8 C 0.295 3.705 9 O -0.419 6.419 10 C 0.285 3.715 11 O -0.400 6.400 12 N -0.268 5.268 13 C -0.048 4.048 14 C -0.062 4.062 15 C -0.221 4.221 16 C 0.113 3.887 17 F -0.120 7.120 18 C -0.285 4.285 19 C 0.082 3.918 20 O -0.108 6.108 21 C -0.494 4.494 22 H 0.120 0.880 23 C -0.210 4.210 24 N -0.541 5.541 25 Si 0.834 3.166 26 H -0.181 1.181 27 H -0.195 1.195 28 H -0.184 1.184 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.103 0.897 36 H 0.245 0.755 37 H 0.257 0.743 38 H 0.258 0.742 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.156 0.844 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.241 -16.985 3.263 17.808 hybrid contribution 1.128 1.424 -0.214 1.829 sum -3.112 -15.561 3.049 16.159 Atomic orbital electron populations 1.21827 0.95110 1.02634 1.01788 1.21666 0.96239 0.92705 1.04663 1.21554 0.93500 0.95387 0.86135 0.88119 1.22598 0.93242 0.93947 0.91796 1.86406 1.27156 1.71687 1.53566 1.45733 1.66424 1.04716 1.15510 1.19758 0.78834 0.84264 0.87626 1.90797 1.50103 1.64690 1.36282 1.20373 0.78885 0.82710 0.89493 1.90721 1.49510 1.63965 1.35792 1.42901 1.61359 1.06661 1.15866 1.17142 1.01913 0.92668 0.93069 1.20732 0.92374 0.99707 0.93344 1.20871 1.06217 0.94740 1.00255 1.17478 0.95097 0.92565 0.83568 1.91444 1.87134 1.83974 1.49449 1.20948 1.04621 1.03946 0.98945 1.19205 0.89480 0.92168 0.90940 1.83922 1.47194 1.36139 1.43577 1.21752 1.27122 0.98123 1.02415 0.87991 1.26486 0.96433 1.02690 0.95402 1.70145 1.33397 1.40101 1.10472 0.84704 0.78514 0.75262 0.78167 1.18142 1.19535 1.18414 0.90979 0.92594 0.93522 0.90470 0.88305 0.95329 0.89665 0.75459 0.74342 0.74177 0.82710 0.81730 0.84392 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.80 71.98 0.71 -1.35 16 2 C -0.12 -1.52 5.19 30.59 0.16 -1.36 16 3 C 0.14 2.58 2.37 44.99 0.11 2.69 16 4 H 0.10 2.00 7.58 -2.39 -0.02 1.99 16 5 C 0.06 1.13 6.85 71.98 0.49 1.62 16 6 O -0.58 -9.99 12.83 -148.98 -1.91 -11.90 16 7 N -0.67 -15.90 4.47 -444.01 -1.98 -17.88 16 8 C 0.52 16.19 7.85 87.22 0.68 16.88 16 9 O -0.54 -19.70 16.15 -3.31 -0.05 -19.75 16 10 C 0.50 17.77 7.61 87.22 0.66 18.43 16 11 O -0.52 -18.66 14.23 -3.40 -0.05 -18.71 16 12 N -0.62 -24.81 5.18 -304.42 -1.58 -26.39 16 13 C 0.05 1.93 6.28 38.32 0.24 2.17 16 14 C -0.04 -1.46 8.65 22.38 0.19 -1.26 16 15 C -0.20 -6.54 10.02 22.33 0.22 -6.32 16 16 C 0.13 4.92 7.29 22.38 0.16 5.09 16 17 F -0.14 -4.92 17.26 44.97 0.78 -4.15 16 18 C -0.26 -11.41 9.11 22.42 0.20 -11.20 16 19 C 0.14 6.44 6.67 22.71 0.15 6.59 16 20 O -0.20 -11.32 9.30 -22.34 -0.21 -11.53 16 21 C -0.42 -23.09 9.44 67.92 0.64 -22.45 16 22 H 0.10 5.21 5.30 -2.91 -0.02 5.19 16 23 C -0.01 -0.55 5.49 84.83 0.47 -0.08 16 24 N -0.91 -52.61 13.67 21.61 0.30 -52.32 16 25 Si 1.01 41.22 29.55 68.60 2.03 43.25 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 27 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 28 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.72 7.75 -2.39 -0.02 0.70 16 32 H 0.08 1.10 7.73 -2.39 -0.02 1.08 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.40 3.84 9.12 -74.06 -0.68 3.17 16 37 H 0.42 9.22 8.07 -92.70 -0.75 8.47 16 38 H 0.42 17.81 8.03 -92.71 -0.74 17.07 16 39 H 0.16 4.87 6.48 -2.91 -0.02 4.85 16 40 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 41 H 0.14 6.05 5.71 -2.91 -0.02 6.03 16 42 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -68.98 369.41 1.37 -67.61 By element: Atomic # 1 Polarization: 43.36 SS G_CDS: -1.04 Total: 42.32 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.10 Total: 9.44 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -3.27 Total: -96.58 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.22 Total: -61.89 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -68.98 1.37 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761008106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.502 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds