Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86803 * 120.00367 * 2 1 4 4 H 1.48497 * 109.46913 * 269.99748 * 3 2 1 5 5 H 1.48503 * 109.46690 * 29.99473 * 3 2 1 6 6 H 1.48496 * 109.47416 * 149.99372 * 3 2 1 7 7 C 1.38640 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99739 * 0.02562 * 7 2 1 9 9 O 1.34812 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.35775 * 116.99850 * 174.98407 * 9 7 2 11 11 C 1.38737 * 120.08894 * 5.19839 * 10 9 7 12 12 C 1.38342 * 119.97799 * 180.27630 * 11 10 9 13 13 F 1.35104 * 119.92632 * 179.74219 * 12 11 10 14 14 C 1.38546 * 120.15134 * 359.72267 * 12 11 10 15 15 C 1.38195 * 120.17280 * 359.97438 * 14 12 11 16 16 C 1.38696 * 120.02463 * 0.04235 * 15 14 12 17 17 N 1.40132 * 120.08059 * 179.97438 * 16 15 14 18 18 C 1.34783 * 120.00088 * 335.23780 * 17 16 15 19 19 O 1.21594 * 119.99443 * 354.32495 * 18 17 16 20 20 N 1.34773 * 120.00162 * 174.32457 * 18 17 16 21 21 C 1.46494 * 119.99893 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47246 * 179.72661 * 21 20 18 23 23 H 1.09000 * 109.52883 * 59.86643 * 22 21 20 24 24 C 1.53137 * 109.52752 * 180.02562 * 22 21 20 25 25 O 1.43077 * 109.15196 * 175.21298 * 24 22 21 26 26 C 1.43069 * 113.59345 * 302.04351 * 25 24 22 27 27 C 1.53147 * 109.14876 * 57.95719 * 26 25 24 28 28 O 1.43076 * 109.14830 * 304.68110 * 27 26 25 29 29 H 0.96998 * 119.99616 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.01215 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.91575 * 179.97438 * 14 12 11 32 32 H 1.08003 * 119.99437 * 180.02562 * 15 14 12 33 33 H 0.96998 * 119.99840 * 155.22707 * 17 16 15 34 34 H 0.97005 * 119.99790 * 359.72456 * 20 18 17 35 35 H 1.09000 * 109.47122 * 299.72659 * 21 20 18 36 36 H 1.08997 * 109.47483 * 59.72713 * 21 20 18 37 37 H 1.09002 * 109.52603 * 295.11234 * 24 22 21 38 38 H 1.08998 * 109.52539 * 55.30760 * 24 22 21 39 39 H 1.09003 * 109.52371 * 177.85110 * 26 25 24 40 40 H 1.08995 * 109.52609 * 298.05239 * 26 25 24 41 41 H 1.08993 * 109.52868 * 64.58519 * 27 26 25 42 42 H 1.08998 * 109.52267 * 184.78735 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3570 -1.2007 0.0011 10 6 3.9733 -2.4059 0.1073 11 6 3.2238 -3.5734 0.1006 12 6 3.8537 -4.7998 0.2148 13 9 3.1224 -5.9358 0.2133 14 6 5.2327 -4.8658 0.3302 15 6 5.9859 -3.7071 0.3313 16 6 5.3619 -2.4737 0.2176 17 7 6.1244 -1.2980 0.2191 18 6 7.3369 -1.2819 0.8077 19 8 7.7255 -2.2541 1.4259 20 7 8.1185 -0.1882 0.7109 21 6 9.4360 -0.1705 1.3510 22 6 10.1145 1.1747 1.0846 23 1 9.5009 1.9790 1.4905 24 6 11.4923 1.1943 1.7527 25 8 12.1647 2.4088 1.4063 26 6 12.3242 2.5929 -0.0035 27 6 10.9464 2.5734 -0.6717 28 8 10.2740 1.3589 -0.3254 29 1 -0.4849 0.8401 -0.0004 30 1 2.1486 -3.5246 0.0112 31 1 5.7205 -5.8252 0.4195 32 1 7.0608 -3.7619 0.4210 33 1 5.7798 -0.4958 -0.2035 34 1 7.8101 0.5859 0.2142 35 1 9.3199 -0.3124 2.4255 36 1 10.0492 -0.9738 0.9427 37 1 11.3732 1.1398 2.8349 38 1 12.0773 0.3424 1.4063 39 1 12.8075 3.5513 -0.1933 40 1 12.9372 1.7881 -0.4090 41 1 10.3613 3.4253 -0.3253 42 1 11.0655 2.6279 -1.7538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761656205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -151.134360 kcal Electronic energy + Delta-G solvation = -29186.856974 eV Core-core repulsion = 24662.214544 eV Total energy + Delta-G solvation = -4524.642430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.25069 -40.64170 -40.18941 -38.92119 -36.79262 -36.43139 -34.98175 -34.20885 -32.50186 -32.09945 -29.59024 -29.20420 -28.25415 -26.08997 -25.40408 -23.69920 -22.46151 -21.62502 -21.59839 -20.60920 -18.47843 -18.28809 -17.88645 -17.40107 -17.01203 -16.92635 -16.48965 -15.77106 -15.68337 -15.51986 -15.34407 -15.00385 -14.91630 -14.71012 -14.13710 -14.05558 -13.89985 -13.79252 -13.48883 -13.30148 -13.16168 -12.75074 -12.44841 -12.29160 -12.27033 -11.88076 -11.85463 -11.49661 -11.14768 -10.99614 -10.83103 -10.80647 -10.47370 -10.01730 -9.78687 -9.65583 -9.53383 -9.14638 -9.00268 -7.94638 -7.16598 -6.53782 -4.20888 1.77947 2.03679 2.65943 3.09975 3.11776 3.12981 3.22349 3.25944 3.31327 4.04003 4.08650 4.28889 4.32798 4.36560 4.49843 4.53954 4.59116 4.63726 4.78599 4.95656 5.00635 5.01615 5.09375 5.21592 5.27991 5.41873 5.48914 5.56619 5.70915 5.91775 6.07081 6.30838 6.45629 6.48594 6.57152 6.62608 6.83132 6.89961 6.99605 7.12663 7.47476 7.66260 7.88247 8.08771 8.67170 8.79362 9.34517 10.53581 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010637 B = 0.003068 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.574798 B = 9124.373319 C =11401.859345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.160 3.840 11 C -0.243 4.243 12 C 0.123 3.877 13 F -0.149 7.149 14 C -0.216 4.216 15 C -0.063 4.063 16 C 0.085 3.915 17 N -0.666 5.666 18 C 0.705 3.295 19 O -0.581 6.581 20 N -0.741 5.741 21 C 0.152 3.848 22 C 0.041 3.959 23 H 0.078 0.922 24 C 0.034 3.966 25 O -0.377 6.377 26 C 0.022 3.978 27 C 0.024 3.976 28 O -0.370 6.370 29 H 0.281 0.719 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.409 0.591 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.888 5.342 -0.369 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.106 3.894 11 C -0.263 4.263 12 C 0.103 3.897 13 F -0.128 7.128 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.010 4.010 17 N -0.312 5.312 18 C 0.406 3.594 19 O -0.459 6.459 20 N -0.397 5.397 21 C 0.027 3.973 22 C -0.018 4.018 23 H 0.096 0.904 24 C -0.044 4.044 25 O -0.296 6.296 26 C -0.055 4.055 27 C -0.053 4.053 28 O -0.290 6.290 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.244 0.756 34 H 0.235 0.765 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 22.127 4.834 0.178 22.649 hybrid contribution -0.464 1.339 -0.496 1.502 sum 21.663 6.174 -0.317 22.528 Atomic orbital electron populations 1.69646 1.05561 1.28660 1.47155 1.24466 0.95035 0.98774 0.95600 0.86193 0.80293 0.81559 0.78866 1.19746 1.20666 1.18498 1.20756 0.76382 0.96852 1.52517 0.87365 1.83488 1.23100 1.24719 1.80376 1.18395 0.89177 0.85913 0.95906 1.20951 1.02067 0.90035 1.13296 1.17465 0.89085 0.81329 1.01779 1.91424 1.77862 1.49454 1.94084 1.20561 0.91528 0.99041 1.12538 1.20809 1.00876 0.88877 0.97809 1.16703 0.86611 0.85788 1.11916 1.42225 1.16727 1.13623 1.58618 1.15808 0.80617 0.83286 0.79706 1.90863 1.74162 1.34312 1.46602 1.44872 1.18069 1.17660 1.59141 1.21081 0.82659 0.95110 0.98428 1.23071 0.96882 0.98702 0.83095 0.90445 1.23158 0.91867 0.87911 1.01415 1.88119 1.78016 1.40764 1.22669 1.23288 0.97069 1.03194 0.81944 1.23273 0.92938 0.87710 1.01359 1.88168 1.78290 1.40689 1.21811 0.90849 0.83343 0.85750 0.83183 0.75566 0.76487 0.89638 0.90496 0.87176 0.91469 0.87688 0.91928 0.91945 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 13.96 55.48 0.77 -23.53 16 2 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 3 Si 0.91 20.07 28.62 -169.99 -4.86 15.21 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.40 9.95 30.88 0.31 -10.10 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 9 O -0.21 -5.12 8.00 0.02 0.00 -5.12 16 10 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 11 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 12 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 13 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 14 C -0.22 -3.92 10.02 -39.48 -0.40 -4.32 16 15 C -0.06 -1.17 8.71 -39.43 -0.34 -1.52 16 16 C 0.08 1.67 6.45 -83.44 -0.54 1.14 16 17 N -0.67 -11.44 5.29 -14.07 -0.07 -11.52 16 18 C 0.71 11.34 8.37 -86.92 -0.73 10.61 16 19 O -0.58 -10.81 13.51 5.28 0.07 -10.74 16 20 N -0.74 -8.91 5.46 -65.23 -0.36 -9.27 16 21 C 0.15 1.48 5.37 -4.05 -0.02 1.46 16 22 C 0.04 0.33 2.93 -26.66 -0.08 0.25 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 C 0.03 0.24 6.34 37.23 0.24 0.48 16 25 O -0.38 -3.19 10.85 -48.80 -0.53 -3.72 16 26 C 0.02 0.14 7.05 37.23 0.26 0.40 16 27 C 0.02 0.16 7.05 37.23 0.26 0.42 16 28 O -0.37 -3.37 10.25 -48.80 -0.50 -3.87 16 29 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.15 3.38 5.63 -52.48 -0.30 3.08 16 31 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.15 2.73 5.78 -52.48 -0.30 2.42 16 33 H 0.41 6.50 8.37 -40.82 -0.34 6.16 16 34 H 0.40 4.19 8.38 -40.82 -0.34 3.85 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -31.29 358.60 -7.01 -38.30 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.93 Total: 11.42 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.04 Total: 0.28 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.34 Total: -44.31 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.96 Total: -23.45 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.86 Total: 15.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.29 -7.01 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761656205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.834 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds