Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48494 * 109.47493 * 270.00501 * 3 2 1 5 5 H 1.48500 * 109.46898 * 30.00477 * 3 2 1 6 6 H 1.48505 * 109.47169 * 150.00238 * 3 2 1 7 7 C 1.38635 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99762 * 359.97438 * 7 2 1 9 9 O 1.34808 * 120.00004 * 179.97438 * 7 2 1 10 10 C 1.35783 * 116.99771 * 174.97560 * 9 7 2 11 11 C 1.38741 * 120.08715 * 5.20572 * 10 9 7 12 12 C 1.38343 * 119.97488 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.92027 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.15214 * 359.97438 * 12 11 10 15 15 C 1.38203 * 120.17789 * 359.72250 * 14 12 11 16 16 C 1.38694 * 120.01409 * 0.55532 * 15 14 12 17 17 N 1.40138 * 120.07209 * 179.71932 * 16 15 14 18 18 C 1.34771 * 120.00166 * 335.23100 * 17 16 15 19 19 O 1.21600 * 119.99847 * 354.33270 * 18 17 16 20 20 N 1.34777 * 120.00035 * 174.05264 * 18 17 16 21 21 O 1.41605 * 119.99778 * 180.27514 * 20 18 17 22 22 C 1.42900 * 113.99815 * 179.97438 * 21 20 18 23 23 C 1.53179 * 109.54573 * 274.55982 * 22 21 20 24 24 C 1.53090 * 109.16348 * 183.15400 * 23 22 21 25 25 O 1.42909 * 109.41708 * 57.60392 * 24 23 22 26 26 C 1.42896 * 114.09789 * 298.84575 * 25 24 23 27 27 C 1.53094 * 109.41932 * 61.15660 * 26 25 24 28 28 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01150 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.91178 * 180.02562 * 14 12 11 31 31 H 1.07999 * 119.99282 * 180.29787 * 15 14 12 32 32 H 0.97002 * 120.00130 * 155.22790 * 17 16 15 33 33 H 0.96998 * 120.00090 * 0.27569 * 20 18 17 34 34 H 1.09001 * 109.54148 * 34.82886 * 22 21 20 35 35 H 1.09007 * 109.51855 * 303.05587 * 23 22 21 36 36 H 1.08991 * 109.52627 * 63.24318 * 23 22 21 37 37 H 1.09004 * 109.48230 * 297.62457 * 24 23 22 38 38 H 1.09004 * 109.48440 * 177.58887 * 24 23 22 39 39 H 1.09003 * 109.47838 * 301.17296 * 26 25 24 40 40 H 1.09003 * 109.49215 * 181.14549 * 26 25 24 41 41 H 1.08997 * 109.52503 * 182.48853 * 27 26 25 42 42 H 1.09001 * 109.52005 * 62.29769 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0466 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5473 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3570 -1.2005 -0.0011 10 6 3.9735 -2.4057 0.1044 11 6 3.2240 -3.5733 0.0977 12 6 3.8545 -4.7999 0.2058 13 9 3.1236 -5.9362 0.1997 14 6 5.2336 -4.8658 0.3203 15 6 5.9868 -3.7071 0.3213 16 6 5.3617 -2.4732 0.2192 17 7 6.1238 -1.2972 0.2260 18 6 7.3385 -1.2848 0.8096 19 8 7.7302 -2.2614 1.4192 20 7 8.1215 -0.1921 0.7128 21 8 9.4003 -0.1813 1.3210 22 6 10.1205 1.0393 1.1381 23 6 10.8706 0.9967 -0.1968 24 6 11.7010 2.2739 -0.3476 25 8 12.5998 2.3894 0.7575 26 6 11.9531 2.4811 2.0284 27 6 11.1327 1.2122 2.2748 28 1 -0.4850 0.8400 0.0004 29 1 2.1488 -3.5245 0.0090 30 1 5.7218 -5.8256 0.4041 31 1 7.0620 -3.7622 0.4059 32 1 5.7771 -0.4921 -0.1893 33 1 7.8092 0.5868 0.2265 34 1 9.4237 1.8776 1.1398 35 1 11.5300 0.1290 -0.2164 36 1 10.1540 0.9294 -1.0152 37 1 11.0376 3.1386 -0.3684 38 1 12.2703 2.2299 -1.2761 39 1 11.2929 3.3484 2.0386 40 1 12.7037 2.5864 2.8117 41 1 10.6035 1.2990 3.2237 42 1 11.7975 0.3489 2.3050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775670350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -123.017605 kcal Electronic energy + Delta-G solvation = -29130.423912 eV Core-core repulsion = 24607.000715 eV Total energy + Delta-G solvation = -4523.423196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83594 -41.85484 -40.74076 -40.29425 -38.52102 -37.88406 -35.73737 -34.46931 -34.36061 -32.34390 -32.16352 -31.19425 -29.65746 -27.32045 -25.53296 -24.69385 -24.29083 -23.34366 -22.37536 -21.50219 -20.21329 -19.88642 -19.67070 -19.11718 -17.94757 -17.40751 -17.21192 -17.11083 -16.96933 -16.62328 -16.53120 -15.97738 -15.90399 -15.80690 -15.70342 -15.46709 -15.26588 -14.97574 -14.70185 -14.60916 -14.26097 -13.94002 -13.71815 -13.60574 -13.32094 -13.14115 -12.64597 -12.43373 -12.37611 -12.33703 -12.15870 -11.73539 -11.64929 -11.52295 -11.41043 -11.14737 -10.91662 -10.72237 -10.08427 -9.61600 -8.79344 -8.50034 -6.24578 0.13244 0.39784 0.41827 1.34607 1.40456 1.52688 1.89673 2.27781 2.50807 2.64171 2.76833 2.89999 3.03838 3.34469 3.38631 3.58748 3.61847 3.88167 3.89489 3.89825 4.13946 4.21259 4.26412 4.41160 4.44271 4.46492 4.60712 4.69889 4.76302 4.86058 4.97944 5.00556 5.03431 5.08970 5.17383 5.28465 5.40565 5.49327 5.60379 5.81398 5.89120 6.07501 6.18777 6.74240 6.81423 7.34518 7.44549 8.60909 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.003007 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.544629 B = 9309.629914 C =11525.871361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.220 6.220 10 C 0.140 3.860 11 C -0.252 4.252 12 C 0.116 3.884 13 F -0.146 7.146 14 C -0.189 4.189 15 C -0.062 4.062 16 C 0.098 3.902 17 N -0.654 5.654 18 C 0.722 3.278 19 O -0.596 6.596 20 N -0.597 5.597 21 O -0.139 6.139 22 C 0.052 3.948 23 C -0.176 4.176 24 C 0.063 3.937 25 O -0.402 6.402 26 C 0.067 3.933 27 C -0.146 4.146 28 H 0.286 0.714 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.420 0.580 33 H 0.422 0.578 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.614 7.725 -0.530 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.170 1.170 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.126 6.126 10 C 0.088 3.912 11 C -0.273 4.273 12 C 0.096 3.904 13 F -0.125 7.125 14 C -0.209 4.209 15 C -0.083 4.083 16 C 0.003 3.997 17 N -0.304 5.304 18 C 0.423 3.577 19 O -0.474 6.474 20 N -0.302 5.302 21 O -0.142 6.142 22 C -0.006 4.006 23 C -0.214 4.214 24 C -0.014 4.014 25 O -0.321 6.321 26 C -0.010 4.010 27 C -0.185 4.185 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.257 0.743 33 H 0.265 0.735 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.201 7.071 0.080 24.254 hybrid contribution -1.394 0.863 -0.396 1.687 sum 21.807 7.934 -0.316 23.207 Atomic orbital electron populations 1.69744 1.07322 1.29860 1.49154 1.25366 0.95859 1.02538 0.95071 0.85197 0.79291 0.76574 0.79618 1.18274 1.20271 1.17042 1.20643 0.77604 0.96256 1.53193 0.90268 1.83428 1.21457 1.25388 1.82376 1.18604 0.89943 0.85549 0.97124 1.20959 1.01374 0.91213 1.13720 1.17500 0.89805 0.80772 1.02307 1.91435 1.77981 1.48997 1.94073 1.20938 0.90538 1.00486 1.08890 1.21038 1.01425 0.88634 0.97207 1.16715 0.85719 0.86740 1.10576 1.41875 1.15680 1.13416 1.59465 1.15247 0.80121 0.82689 0.79662 1.90866 1.74111 1.35042 1.47418 1.45827 1.08722 1.17349 1.58328 1.90638 1.14356 1.37177 1.72035 1.22991 0.93637 0.87090 0.96883 1.22760 1.00585 1.00541 0.97559 1.22693 0.92894 0.95594 0.90186 1.87944 1.34592 1.94115 1.15446 1.22714 0.97270 0.95073 0.85916 1.22289 0.97387 1.00818 0.97975 0.90474 0.85323 0.82272 0.82130 0.74292 0.73460 0.88210 0.91407 0.89390 0.91143 0.87313 0.91081 0.86567 0.88977 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.96 21.61 0.30 -51.93 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 39.76 28.62 68.60 1.96 41.73 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.40 -21.71 9.94 67.91 0.68 -21.04 16 8 H 0.08 4.62 5.44 -2.91 -0.02 4.61 16 9 O -0.22 -10.40 8.00 -22.88 -0.18 -10.58 16 10 C 0.14 6.05 6.66 22.68 0.15 6.20 16 11 C -0.25 -10.94 9.14 22.42 0.20 -10.73 16 12 C 0.12 4.43 7.29 22.37 0.16 4.59 16 13 F -0.15 -5.43 17.26 44.97 0.78 -4.65 16 14 C -0.19 -6.27 10.02 22.33 0.22 -6.04 16 15 C -0.06 -2.16 8.71 22.37 0.19 -1.97 16 16 C 0.10 3.64 6.45 38.22 0.25 3.88 16 17 N -0.65 -20.37 5.30 -316.70 -1.68 -22.05 16 18 C 0.72 22.31 8.51 179.06 1.52 23.83 16 19 O -0.60 -22.81 13.92 13.32 0.19 -22.63 16 20 N -0.60 -13.52 6.38 -184.74 -1.18 -14.69 16 21 O -0.14 -3.26 10.76 -21.44 -0.23 -3.49 16 22 C 0.05 0.76 2.83 30.71 0.09 0.85 16 23 C -0.18 -2.27 5.79 30.68 0.18 -2.09 16 24 C 0.06 0.65 6.84 72.01 0.49 1.14 16 25 O -0.40 -5.76 10.77 -148.98 -1.60 -7.37 16 26 C 0.07 0.67 6.84 72.01 0.49 1.16 16 27 C -0.15 -1.90 5.79 30.69 0.18 -1.72 16 28 H 0.29 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.13 6.11 5.63 -2.91 -0.02 6.09 16 30 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.16 5.43 5.78 -2.91 -0.02 5.42 16 32 H 0.42 11.33 8.36 -92.71 -0.78 10.55 16 33 H 0.42 6.25 8.45 -92.71 -0.78 5.46 16 34 H 0.10 1.05 7.94 -2.39 -0.02 1.03 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.56 359.72 3.18 -66.38 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.45 Total: 30.19 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.28 Total: -0.90 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.55 Total: -88.67 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.83 Total: -44.07 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.96 Total: 41.73 kcal Total: -69.56 3.18 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775670350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.639 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds