Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47142 * 89.99647 * 3 2 1 5 5 H 1.48508 * 109.47152 * 329.99970 * 3 2 1 6 6 H 1.48500 * 109.47518 * 209.99911 * 3 2 1 7 7 C 1.38636 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00572 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99666 * 174.98099 * 9 7 2 11 11 C 1.38738 * 120.09150 * 5.19381 * 10 9 7 12 12 C 1.38341 * 119.97746 * 179.72635 * 11 10 9 13 13 F 1.35105 * 119.92414 * 180.27528 * 12 11 10 14 14 C 1.38547 * 120.15324 * 0.54866 * 12 11 10 15 15 C 1.38199 * 120.17012 * 359.72289 * 14 12 11 16 16 C 1.38694 * 120.02624 * 0.02562 * 15 14 12 17 17 N 1.40131 * 120.07553 * 179.97438 * 16 15 14 18 18 C 1.34778 * 120.00128 * 335.22832 * 17 16 15 19 19 O 1.21588 * 119.99649 * 354.32658 * 18 17 16 20 20 N 1.34776 * 119.99737 * 174.32562 * 18 17 16 21 21 C 1.47418 * 125.64995 * 359.69386 * 20 18 17 22 22 C 1.54694 * 104.94187 * 204.07154 * 21 20 18 23 23 H 1.09001 * 111.13690 * 205.09126 * 22 21 20 24 24 O 1.42904 * 110.81475 * 81.32308 * 22 21 20 25 25 C 1.55151 * 101.67695 * 323.27779 * 22 21 20 26 26 C 1.47020 * 125.64707 * 179.97438 * 20 18 17 27 27 H 1.08999 * 109.88223 * 59.48742 * 26 20 18 28 28 C 1.53003 * 109.88171 * 298.32555 * 26 20 18 29 29 O 1.42897 * 109.47426 * 66.45307 * 28 26 20 30 30 H 0.97005 * 119.99903 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00949 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.91363 * 179.74952 * 14 12 11 33 33 H 1.08001 * 119.98733 * 180.02562 * 15 14 12 34 34 H 0.97006 * 119.99918 * 155.23030 * 17 16 15 35 35 H 1.09001 * 110.37018 * 323.00184 * 21 20 18 36 36 H 1.08999 * 110.37121 * 85.32553 * 21 20 18 37 37 H 0.96693 * 114.00240 * 67.79323 * 24 22 21 38 38 H 1.09004 * 110.72119 * 276.97255 * 25 22 21 39 39 H 1.09001 * 110.87245 * 153.76997 * 25 22 21 40 40 H 1.09004 * 109.47088 * 186.45744 * 28 26 20 41 41 H 1.09004 * 109.47202 * 306.44897 * 28 26 20 42 42 H 0.96698 * 113.99905 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 1.4001 5 1 1.4472 2.6527 -0.7001 6 1 3.5473 1.4402 -0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1048 11 6 3.4562 -3.4392 -0.0977 12 6 4.2034 -4.5991 -0.1994 13 9 5.5528 -4.5348 -0.1868 14 6 3.5710 -5.8259 -0.3199 15 6 2.1910 -5.8976 -0.3333 16 6 1.4348 -4.7399 -0.2265 17 7 0.0354 -4.8114 -0.2405 18 6 -0.5803 -5.8528 -0.8345 19 8 0.0722 -6.6760 -1.4469 20 7 -1.9192 -5.9817 -0.7495 21 6 -2.8272 -5.0647 -0.0369 22 6 -4.0742 -5.9173 0.2964 23 1 -4.9586 -5.2910 0.4136 24 8 -3.8512 -6.7077 1.4658 25 6 -4.1895 -6.8119 -0.9660 26 6 -2.7155 -7.0634 -1.3474 27 1 -2.3895 -8.0256 -0.9523 28 6 -2.5608 -7.0433 -2.8694 29 8 -1.2147 -7.3749 -3.2159 30 1 -0.4850 -0.8401 -0.0004 31 1 3.9516 -2.4836 -0.0088 32 1 4.1581 -6.7286 -0.4031 33 1 1.7011 -6.8556 -0.4269 34 1 -0.4902 -4.1112 0.1773 35 1 -2.3591 -4.7025 0.8784 36 1 -3.1030 -4.2285 -0.6794 37 1 -3.7724 -6.1921 2.2800 38 1 -4.7100 -6.2850 -1.7658 39 1 -4.6932 -7.7499 -0.7325 40 1 -3.2401 -7.7710 -3.3134 41 1 -2.7982 -6.0481 -3.2457 42 1 -1.0439 -7.3818 -4.1676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775671208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -153.965410 kcal Electronic energy + Delta-G solvation = -30462.214119 eV Core-core repulsion = 25937.448925 eV Total energy + Delta-G solvation = -4524.765194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.22288 -40.61690 -39.39616 -38.11108 -36.72351 -36.25800 -35.09465 -33.98545 -32.37714 -31.40054 -29.64477 -29.34761 -27.99982 -25.42337 -25.09885 -23.17484 -22.15963 -21.71358 -20.95059 -19.39473 -18.68682 -18.29497 -17.95524 -17.37013 -17.02972 -16.46094 -16.05307 -15.57534 -15.29070 -14.98357 -14.88203 -14.61987 -14.32213 -14.15132 -13.90631 -13.87855 -13.81231 -13.69398 -13.30451 -13.01818 -12.60772 -12.35619 -12.25605 -12.13910 -11.82800 -11.44074 -11.28548 -11.15318 -10.90675 -10.79873 -10.68908 -10.48378 -10.37206 -9.87606 -9.76485 -9.70100 -9.30461 -8.87131 -8.48362 -7.85722 -7.03158 -6.89530 -4.17982 1.87502 2.12410 2.71938 3.18944 3.24377 3.38039 3.53820 3.78836 3.97110 3.99979 4.15492 4.32394 4.39567 4.48142 4.79775 4.90713 4.95095 5.03079 5.11107 5.15807 5.21424 5.31854 5.35376 5.43150 5.47636 5.56362 5.59869 5.74933 5.97399 6.01811 6.13513 6.35980 6.60161 6.73677 6.90227 6.96159 7.13543 7.28733 7.33597 7.43351 7.66172 7.82048 8.24539 8.26753 8.76815 8.96901 9.41425 10.53835 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009894 B = 0.004018 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.299066 B = 6966.704385 C = 8838.846879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.013 3.987 3 Si 1.097 2.903 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.468 4.468 8 H 0.086 0.914 9 O -0.199 6.199 10 C 0.154 3.846 11 C -0.251 4.251 12 C 0.120 3.880 13 F -0.152 7.152 14 C -0.219 4.219 15 C -0.063 4.063 16 C 0.089 3.911 17 N -0.668 5.668 18 C 0.715 3.285 19 O -0.537 6.537 20 N -0.625 5.625 21 C 0.063 3.937 22 C 0.094 3.906 23 H 0.083 0.917 24 O -0.556 6.556 25 C -0.118 4.118 26 C 0.163 3.837 27 H 0.082 0.918 28 C 0.063 3.937 29 O -0.530 6.530 30 H 0.279 0.721 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.383 0.617 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 -10.293 -0.989 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.192 4.192 3 Si 0.921 3.079 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.544 4.544 8 H 0.104 0.896 9 O -0.103 6.103 10 C 0.099 3.901 11 C -0.272 4.272 12 C 0.100 3.900 13 F -0.131 7.131 14 C -0.240 4.240 15 C -0.084 4.084 16 C -0.006 4.006 17 N -0.315 5.315 18 C 0.418 3.582 19 O -0.411 6.411 20 N -0.365 5.365 21 C -0.061 4.061 22 C 0.034 3.966 23 H 0.101 0.899 24 O -0.362 6.362 25 C -0.156 4.156 26 C 0.059 3.941 27 H 0.100 0.900 28 C -0.017 4.017 29 O -0.332 6.332 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.834 -9.697 -1.211 13.864 hybrid contribution 0.232 -0.577 -0.043 0.623 sum -9.602 -10.274 -1.254 14.118 Atomic orbital electron populations 1.70594 1.06513 1.31291 1.42775 1.26532 0.96796 1.01048 0.94810 0.83062 0.74318 0.72978 0.77512 1.20604 1.20029 1.20685 1.22249 0.93286 0.81807 1.57068 0.89646 1.83586 1.35075 1.12008 1.79653 1.18526 0.89467 0.86199 0.95864 1.20827 0.93285 0.98454 1.14629 1.17444 0.75973 0.94331 1.02212 1.91408 1.30103 1.97377 1.94179 1.20528 0.94650 0.95837 1.12958 1.20827 0.92153 0.97632 0.97802 1.16720 0.81317 0.91278 1.11318 1.42291 1.05044 1.25140 1.59051 1.15359 0.80258 0.82637 0.79967 1.90938 1.62041 1.43388 1.44725 1.47423 1.04131 1.27918 1.57041 1.23030 0.91678 0.93588 0.97780 1.22841 0.95583 0.91924 0.86267 0.89907 1.86509 1.95333 1.37216 1.17142 1.22685 0.95082 1.01774 0.96081 1.21314 0.89544 0.91633 0.91624 0.89967 1.22568 0.85551 0.98472 0.95106 1.87024 1.26276 1.92806 1.27136 0.91123 0.83931 0.85906 0.83222 0.75961 0.90290 0.90448 0.76944 0.88924 0.88679 0.93474 0.93995 0.79089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 13.70 55.48 0.76 -23.83 16 2 C 0.01 0.35 5.49 -17.52 -0.10 0.26 16 3 Si 1.10 22.98 29.91 -169.99 -5.09 17.90 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.47 -12.61 9.49 30.88 0.29 -12.32 16 8 H 0.09 2.21 5.20 -52.49 -0.27 1.94 16 9 O -0.20 -5.21 8.57 0.02 0.00 -5.21 16 10 C 0.15 3.67 6.66 -38.94 -0.26 3.41 16 11 C -0.25 -5.71 9.14 -39.36 -0.36 -6.07 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -3.02 17.26 2.25 0.04 -2.98 16 14 C -0.22 -4.29 10.02 -39.48 -0.40 -4.69 16 15 C -0.06 -1.29 8.71 -39.43 -0.34 -1.64 16 16 C 0.09 1.93 6.45 -83.44 -0.54 1.39 16 17 N -0.67 -12.98 5.23 -14.07 -0.07 -13.05 16 18 C 0.72 13.34 8.03 -86.92 -0.70 12.64 16 19 O -0.54 -11.31 10.79 -18.82 -0.20 -11.51 16 20 N -0.63 -9.07 3.07 -168.83 -0.52 -9.59 16 21 C 0.06 0.70 6.24 -2.65 -0.02 0.68 16 22 C 0.09 0.79 4.43 -24.70 -0.11 0.68 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 O -0.56 -5.27 13.46 -35.23 -0.47 -5.74 16 25 C -0.12 -0.97 6.22 -24.90 -0.15 -1.13 16 26 C 0.16 1.99 3.30 -66.95 -0.22 1.77 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 C 0.06 0.73 6.47 37.16 0.24 0.97 16 29 O -0.53 -7.90 10.33 -59.34 -0.61 -8.51 16 30 H 0.28 7.82 7.97 -40.82 -0.33 7.49 16 31 H 0.14 3.27 5.63 -52.48 -0.30 2.97 16 32 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.15 3.06 5.79 -52.49 -0.30 2.75 16 34 H 0.41 7.50 6.90 -40.82 -0.28 7.22 16 35 H 0.08 0.87 7.40 -51.93 -0.38 0.49 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.38 2.24 9.12 45.56 0.42 2.65 16 38 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.36 3.94 9.12 45.56 0.42 4.35 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -34.48 353.50 -6.98 -41.47 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -3.20 Total: 17.55 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.95 Total: -1.82 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.17 Total: -46.47 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.29 Total: -30.98 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.09 Total: 17.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.48 -6.98 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.499 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds