Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86804 * 120.00206 * 2 1 4 4 H 1.48503 * 109.46712 * 270.00162 * 3 2 1 5 5 H 1.48498 * 109.46876 * 30.00188 * 3 2 1 6 6 H 1.48499 * 109.47313 * 150.00157 * 3 2 1 7 7 C 1.38635 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00085 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00339 * 359.97438 * 7 2 1 10 10 C 1.35782 * 117.00708 * 174.97459 * 9 7 2 11 11 C 1.38737 * 120.08066 * 5.23007 * 10 9 7 12 12 C 1.38347 * 119.97418 * 180.23420 * 11 10 9 13 13 F 1.35101 * 119.92756 * 179.79322 * 12 11 10 14 14 C 1.38546 * 120.15042 * 359.76281 * 12 11 10 15 15 C 1.38191 * 120.17468 * 0.02562 * 14 12 11 16 16 C 1.38698 * 120.02362 * 359.97438 * 15 14 12 17 17 N 1.40133 * 120.07803 * 180.02562 * 16 15 14 18 18 C 1.34778 * 120.00115 * 24.73948 * 17 16 15 19 19 O 1.21598 * 119.99855 * 5.52420 * 18 17 16 20 20 N 1.34773 * 119.99969 * 185.52783 * 18 17 16 21 21 O 1.41606 * 119.99931 * 180.02562 * 20 18 17 22 22 C 1.42901 * 113.99976 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.47810 * 30.02147 * 22 21 20 24 24 C 1.53088 * 109.48126 * 150.05613 * 22 21 20 25 25 C 1.53175 * 109.16405 * 177.59242 * 24 22 21 26 26 C 1.53178 * 109.03705 * 303.01709 * 25 24 22 27 27 C 1.53093 * 109.15920 * 56.98320 * 26 25 24 28 28 O 1.42901 * 109.48168 * 269.99888 * 22 21 20 29 29 H 0.96999 * 119.99867 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.01622 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.91371 * 180.02562 * 14 12 11 32 32 H 1.08002 * 119.99188 * 179.97438 * 15 14 12 33 33 H 0.97004 * 120.00302 * 204.47054 * 17 16 15 34 34 H 0.96998 * 120.00102 * 359.97438 * 20 18 17 35 35 H 1.09002 * 109.52461 * 297.49688 * 24 22 21 36 36 H 1.08999 * 109.52431 * 57.68555 * 24 22 21 37 37 H 1.09005 * 109.54138 * 183.15612 * 25 24 22 38 38 H 1.08993 * 109.61577 * 62.93193 * 25 24 22 39 39 H 1.09004 * 109.52205 * 297.07971 * 26 25 24 40 40 H 1.08999 * 109.57526 * 176.91769 * 26 25 24 41 41 H 1.09001 * 109.47930 * 182.40970 * 27 26 25 42 42 H 1.08996 * 109.49422 * 62.37717 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1070 11 6 3.4561 -3.4392 -0.1004 12 6 4.2032 -4.5981 -0.2139 13 9 5.5527 -4.5330 -0.2115 14 6 3.5707 -5.8253 -0.3294 15 6 2.1907 -5.8979 -0.3324 16 6 1.4346 -4.7407 -0.2189 17 7 0.0352 -4.8131 -0.2212 18 6 -0.5816 -5.9483 0.1627 19 8 0.0702 -6.8742 0.6060 20 7 -1.9206 -6.0572 0.0553 21 8 -2.5686 -7.2498 0.4592 22 6 -3.9874 -7.2261 0.2903 23 1 -4.2425 -6.5832 -0.5521 24 6 -4.4932 -8.6457 0.0210 25 6 -6.0201 -8.6212 -0.0990 26 6 -6.6124 -8.0264 1.1823 27 6 -6.0248 -6.6307 1.4068 28 8 -4.6004 -6.7209 1.4782 29 1 -0.4850 0.8400 0.0004 30 1 3.9516 -2.4838 -0.0100 31 1 4.1577 -6.7276 -0.4174 32 1 1.7007 -6.8561 -0.4230 33 1 -0.4898 -4.0449 -0.4955 34 1 -2.4405 -5.3185 -0.2981 35 1 -4.0608 -9.0163 -0.9085 36 1 -4.2030 -9.2982 0.8444 37 1 -6.3915 -9.6369 -0.2351 38 1 -6.3102 -8.0094 -0.9531 39 1 -6.3649 -8.6664 2.0292 40 1 -7.6956 -7.9542 1.0846 41 1 -6.4102 -6.2198 2.3399 42 1 -6.3067 -5.9799 0.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775671616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -107.420932 kcal Electronic energy + Delta-G solvation = -29030.199608 eV Core-core repulsion = 24507.452734 eV Total energy + Delta-G solvation = -4522.746874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -48.21226 -40.28545 -39.82955 -38.69266 -36.98966 -36.14444 -34.12257 -34.10377 -32.41827 -32.29586 -30.26008 -29.34148 -27.91608 -25.50320 -25.12760 -23.73924 -22.71046 -21.81534 -21.04746 -20.41842 -18.83075 -18.32316 -18.30150 -17.39074 -16.99188 -16.58693 -16.24860 -15.56502 -15.21716 -15.11436 -14.97003 -14.86177 -14.80660 -14.31360 -14.23911 -13.75129 -13.59751 -13.49483 -13.41937 -13.27523 -13.13991 -12.75929 -12.29069 -12.16783 -11.76976 -11.66168 -11.56138 -11.45804 -11.39983 -10.99982 -10.77204 -10.71326 -10.54445 -9.99511 -9.85937 -9.78270 -9.52201 -8.97689 -8.95460 -7.85033 -7.05430 -6.60228 -4.17654 1.50440 1.88833 2.14271 3.06924 3.08402 3.12783 3.23267 3.39949 3.84299 3.95112 4.24840 4.31281 4.38043 4.38901 4.47837 4.50320 4.74525 4.87378 4.96186 4.97150 5.12904 5.13624 5.26225 5.33073 5.45091 5.57491 5.57898 5.61835 5.76675 5.80785 6.03140 6.15709 6.52014 6.56129 6.65580 6.86550 6.92370 7.01043 7.05401 7.08366 7.25987 7.67396 7.84214 8.13519 8.78211 8.86305 9.46997 10.57027 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011081 B = 0.002805 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.170246 B = 9981.521049 C =12319.453006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.391 4.391 8 H 0.095 0.905 9 O -0.171 6.171 10 C 0.155 3.845 11 C -0.255 4.255 12 C 0.125 3.875 13 F -0.152 7.152 14 C -0.223 4.223 15 C -0.062 4.062 16 C 0.085 3.915 17 N -0.653 5.653 18 C 0.721 3.279 19 O -0.563 6.563 20 N -0.611 5.611 21 O -0.101 6.101 22 C 0.228 3.772 23 H 0.072 0.928 24 C -0.138 4.138 25 C -0.118 4.118 26 C -0.162 4.162 27 C 0.069 3.931 28 O -0.396 6.396 29 H 0.271 0.729 30 H 0.144 0.856 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.415 0.585 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -11.598 -2.757 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.099 3.901 11 C -0.275 4.275 12 C 0.105 3.895 13 F -0.131 7.131 14 C -0.243 4.243 15 C -0.082 4.082 16 C -0.010 4.010 17 N -0.303 5.303 18 C 0.423 3.577 19 O -0.439 6.439 20 N -0.317 5.317 21 O -0.103 6.103 22 C 0.131 3.869 23 H 0.089 0.911 24 C -0.177 4.177 25 C -0.156 4.156 26 C -0.199 4.199 27 C -0.007 4.007 28 O -0.317 6.317 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.168 0.832 33 H 0.251 0.749 34 H 0.247 0.753 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.258 -12.364 -2.091 17.535 hybrid contribution -0.251 1.637 -0.399 1.704 sum -12.509 -10.726 -2.490 16.665 Atomic orbital electron populations 1.70004 1.05928 1.27949 1.45693 1.25269 0.95905 0.98819 0.96202 0.85681 0.79050 0.79783 0.78824 1.19770 1.20210 1.19049 1.21344 0.92005 0.80361 1.52973 0.88788 1.83906 1.33924 1.11270 1.78331 1.18667 0.89495 0.86986 0.94935 1.20819 0.93248 0.98486 1.14988 1.17463 0.75955 0.94337 1.01762 1.91409 1.30133 1.97373 1.94135 1.20497 0.94555 0.95827 1.13426 1.20839 0.92275 0.97737 0.97392 1.16639 0.80391 0.91870 1.12067 1.41957 1.05373 1.14220 1.68773 1.15240 0.79565 0.83789 0.79145 1.90881 1.63200 1.39231 1.50599 1.46208 1.04391 1.10297 1.70821 1.90646 1.16859 1.16938 1.85857 1.23391 0.80001 0.95875 0.87620 0.91099 1.22055 0.96150 0.95148 1.04354 1.21598 0.93684 1.02349 0.97982 1.22272 1.00930 0.97870 0.98860 1.22578 0.79325 0.95959 1.02853 1.87930 1.20208 1.85185 1.38396 0.91875 0.83878 0.85859 0.83207 0.74876 0.75280 0.89478 0.89520 0.90347 0.91355 0.90554 0.90320 0.88193 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.24 13.67 55.48 0.76 -22.48 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.22 9.49 30.88 0.29 -9.92 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.17 -4.42 9.16 0.03 0.00 -4.42 16 10 C 0.16 3.56 6.66 -38.94 -0.26 3.30 16 11 C -0.25 -5.55 9.14 -39.36 -0.36 -5.91 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.22 -4.20 10.02 -39.48 -0.40 -4.59 16 15 C -0.06 -1.22 8.72 -39.43 -0.34 -1.56 16 16 C 0.08 1.78 6.45 -83.44 -0.54 1.24 16 17 N -0.65 -12.22 5.30 -14.07 -0.07 -12.29 16 18 C 0.72 13.38 8.52 -86.92 -0.74 12.64 16 19 O -0.56 -12.24 13.91 -12.87 -0.18 -12.42 16 20 N -0.61 -9.18 6.38 27.64 0.18 -9.00 16 21 O -0.10 -1.52 11.00 -42.00 -0.46 -1.99 16 22 C 0.23 2.49 3.44 37.20 0.13 2.62 16 23 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 24 C -0.14 -1.15 5.79 -26.60 -0.15 -1.30 16 25 C -0.12 -0.70 6.03 -26.55 -0.16 -0.86 16 26 C -0.16 -0.98 6.14 -26.59 -0.16 -1.15 16 27 C 0.07 0.54 6.84 37.21 0.25 0.80 16 28 O -0.40 -4.78 10.66 -59.04 -0.63 -5.41 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.14 3.10 5.63 -52.49 -0.30 2.81 16 31 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.15 2.93 5.78 -52.49 -0.30 2.62 16 33 H 0.42 7.28 8.36 -40.82 -0.34 6.94 16 34 H 0.41 4.78 8.38 -40.82 -0.34 4.44 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -32.31 360.92 -7.68 -39.99 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.90 Total: 12.37 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.82 Total: -1.46 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.86 Total: -43.78 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.27 Total: -24.24 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.31 -7.68 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775671616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.432 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds