Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86793 * 120.00221 * 2 1 4 4 H 1.48497 * 109.47298 * 274.99620 * 3 2 1 5 5 H 1.48503 * 109.47247 * 34.99905 * 3 2 1 6 6 H 1.48503 * 109.47354 * 154.99645 * 3 2 1 7 7 C 1.39908 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00502 * 137.34915 * 7 2 1 9 9 C 1.41155 * 119.99754 * 317.35189 * 7 2 1 10 10 C 1.40873 * 120.16370 * 167.88399 * 9 7 2 11 11 C 1.36374 * 119.82905 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16594 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83243 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99941 * 36.58214 * 13 12 11 15 15 O 1.21276 * 120.00111 * 355.89174 * 14 13 12 16 16 C 1.50707 * 119.99975 * 175.88375 * 14 13 12 17 17 O 1.42900 * 109.47075 * 180.02562 * 16 14 13 18 18 C 1.34994 * 116.99834 * 180.02562 * 17 16 14 19 19 O 1.21724 * 120.00270 * 359.97438 * 18 17 16 20 20 C 1.41255 * 120.00159 * 180.02562 * 18 17 16 21 21 C 1.35750 * 120.00302 * 188.39765 * 20 18 17 22 22 C 1.41595 * 119.99783 * 32.30650 * 21 20 18 23 23 C 1.38332 * 126.26335 * 187.24930 * 22 21 20 24 24 C 1.39752 * 107.07117 * 179.97438 * 23 22 21 25 25 C 1.35529 * 107.92155 * 359.75856 * 24 23 22 26 26 N 1.35732 * 108.91651 * 0.39620 * 25 24 23 27 27 H 0.96994 * 125.69196 * 179.86844 * 26 25 24 28 28 C 1.39476 * 120.33509 * 0.25583 * 12 11 10 29 29 C 1.36371 * 120.16829 * 359.48611 * 28 12 11 30 30 H 0.96994 * 119.99714 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.08350 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.91860 * 179.97438 * 11 10 9 33 33 H 0.96999 * 120.00296 * 216.59380 * 13 12 11 34 34 H 1.09000 * 109.46906 * 60.00162 * 16 14 13 35 35 H 1.08998 * 109.47205 * 300.00801 * 16 14 13 36 36 H 1.07999 * 119.99885 * 8.40148 * 20 18 17 37 37 H 1.07998 * 120.00202 * 212.30109 * 21 20 18 38 38 H 1.07994 * 126.46284 * 0.02562 * 23 22 21 39 39 H 1.07999 * 126.04566 * 179.97438 * 24 23 22 40 40 H 1.07998 * 125.54701 * 180.23916 * 25 24 23 41 41 H 1.08007 * 119.91861 * 179.74622 * 28 12 11 42 42 H 1.08002 * 120.08719 * 180.26277 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3847 2.1073 -1.3947 5 1 1.4971 2.6198 0.8030 6 1 3.5892 1.4119 0.5918 7 6 2.0083 -1.2117 -0.0005 8 1 2.8740 -1.3352 -0.6342 9 6 1.5824 -2.2728 0.8272 10 6 2.1137 -3.5654 0.6505 11 6 1.6971 -4.5857 1.4538 12 6 0.7477 -4.3518 2.4485 13 7 0.3268 -5.3987 3.2643 14 6 1.2048 -6.3438 3.6546 15 8 2.3427 -6.3244 3.2356 16 6 0.7726 -7.4246 4.6118 17 8 1.8727 -8.2990 4.8712 18 6 1.6511 -9.3290 5.7151 19 8 0.5524 -9.4791 6.2170 20 6 2.6946 -10.2321 6.0167 21 6 2.4325 -11.3600 6.7253 22 6 1.1780 -12.0032 6.5938 23 6 0.7213 -13.0682 7.3494 24 6 -0.5588 -13.3818 6.8847 25 6 -0.8604 -12.5223 5.8812 26 7 0.1889 -11.6827 5.6906 27 1 0.2331 -10.9727 5.0313 28 6 0.2135 -3.0757 2.6263 29 6 0.6243 -2.0443 1.8343 30 1 -0.4849 0.8400 0.0004 31 1 2.8486 -3.7481 -0.1195 32 1 2.1031 -5.5773 1.3193 33 1 -0.5983 -5.4479 3.5517 34 1 -0.0475 -7.9925 4.1723 35 1 0.4410 -6.9714 5.5459 36 1 3.7009 -10.0253 5.6836 37 1 3.1810 -11.7667 7.3892 38 1 1.2533 -13.5632 8.1482 39 1 -1.1967 -14.1677 7.2613 40 1 -1.7843 -12.5093 5.3220 41 1 -0.5242 -2.9029 3.3960 42 1 0.2129 -1.0558 1.9759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782331931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -7.257315 kcal Electronic energy + Delta-G solvation = -27132.847003 eV Core-core repulsion = 23045.212775 eV Total energy + Delta-G solvation = -4087.634229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77896 -40.58505 -39.47775 -37.42542 -36.63884 -34.53270 -34.24245 -33.19545 -31.30562 -30.12357 -29.54642 -29.03294 -27.99366 -25.11895 -24.24507 -21.84652 -21.43516 -20.79248 -20.73090 -20.17954 -19.81734 -18.58584 -17.75431 -17.49634 -16.96195 -16.75112 -16.08296 -15.57535 -15.26248 -14.82452 -14.65958 -14.52146 -14.20224 -14.02192 -13.84573 -13.50491 -13.28533 -12.85283 -12.74232 -12.65023 -12.56183 -12.32449 -12.13776 -12.10931 -11.43760 -11.20435 -11.03091 -10.86712 -10.83909 -10.59231 -10.27181 -10.25372 -9.77016 -9.52041 -9.22190 -9.08529 -8.70452 -7.96363 -7.58847 -7.34298 -7.03846 -4.29544 -0.03512 2.11863 2.39790 2.49189 2.53706 2.86093 2.94554 2.99780 3.05320 3.05639 3.08503 3.31564 3.79918 3.81289 4.33635 4.62162 4.64511 4.81254 4.84362 4.95571 4.98826 5.03014 5.08544 5.16971 5.52336 5.63081 5.64807 5.89356 5.92359 6.14925 6.18195 6.40379 6.54512 6.71843 6.72230 6.87916 6.91288 7.08264 7.19002 7.25821 7.50453 7.53498 7.64160 7.85790 7.98048 8.18229 8.22798 8.47942 8.66844 8.77103 8.95550 9.80394 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038516 B = 0.001704 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.793679 B =16424.392782 C =16742.552384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.098 3.902 3 Si 0.891 3.109 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.464 4.464 8 H 0.085 0.915 9 C 0.110 3.890 10 C -0.233 4.233 11 C -0.059 4.059 12 C -0.039 4.039 13 N -0.640 5.640 14 C 0.496 3.504 15 O -0.512 6.512 16 C 0.051 3.949 17 O -0.322 6.322 18 C 0.495 3.505 19 O -0.527 6.527 20 C -0.275 4.275 21 C 0.070 3.930 22 C -0.012 4.012 23 C -0.130 4.130 24 C -0.218 4.218 25 C 0.034 3.966 26 N -0.515 5.515 27 H 0.417 0.583 28 C -0.093 4.093 29 C -0.189 4.189 30 H 0.286 0.714 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.395 0.605 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -19.949 12.222 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.128 4.128 3 Si 0.713 3.287 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.108 3.892 10 C -0.253 4.253 11 C -0.079 4.079 12 C -0.131 4.131 13 N -0.285 5.285 14 C 0.281 3.719 15 O -0.387 6.387 16 C -0.027 4.027 17 O -0.237 6.237 18 C 0.346 3.654 19 O -0.422 6.422 20 C -0.295 4.295 21 C 0.051 3.949 22 C -0.123 4.123 23 C -0.155 4.155 24 C -0.242 4.242 25 C -0.105 4.105 26 N -0.111 5.111 27 H 0.259 0.741 28 C -0.113 4.113 29 C -0.209 4.209 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.185 0.815 41 H 0.107 0.893 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.898 -19.673 11.897 23.068 hybrid contribution -0.456 1.252 -0.033 1.333 sum -2.354 -18.420 11.864 22.036 Atomic orbital electron populations 1.70039 1.08609 1.30499 1.27428 1.26049 0.94095 1.02018 0.90671 0.86592 0.82085 0.80578 0.79417 1.19233 1.19707 1.17758 1.19537 1.11602 0.96067 1.21754 0.89655 1.17565 0.89499 0.91331 0.90851 1.20485 1.07678 0.93069 1.04034 1.20314 0.96184 0.98379 0.93024 1.16947 1.09454 0.86772 0.99907 1.42698 1.11353 1.24844 1.49570 1.19919 0.86234 0.83230 0.82554 1.90727 1.19101 1.73784 1.55136 1.22323 0.88606 0.91369 1.00387 1.86328 1.40385 1.37708 1.59269 1.20119 0.87923 0.81103 0.76238 1.90924 1.25778 1.74460 1.51032 1.21146 1.00373 0.98291 1.09739 1.20979 0.93455 0.91158 0.89339 1.18307 0.92896 1.01660 0.99403 1.21570 0.96346 0.97558 1.00039 1.20875 0.98107 1.03887 1.01359 1.22214 0.92894 0.94126 1.01269 1.42647 1.12841 1.27085 1.28511 0.74099 1.20116 1.00240 0.91613 0.99309 1.20588 1.03642 0.97575 0.99097 0.90264 0.88778 0.87861 0.77165 0.89133 0.88654 0.82978 0.82560 0.83789 0.84184 0.81523 0.89322 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.20 11.90 55.55 0.66 -17.54 16 2 C 0.10 2.35 4.60 -17.33 -0.08 2.27 16 3 Si 0.89 17.69 29.69 -169.99 -5.05 12.64 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.25 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -12.10 8.91 -37.85 -0.34 -12.44 16 8 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.11 2.94 5.67 -106.80 -0.61 2.33 16 10 C -0.23 -5.95 9.74 -39.26 -0.38 -6.34 16 11 C -0.06 -1.44 8.60 -39.79 -0.34 -1.78 16 12 C -0.04 -0.88 6.28 -83.57 -0.52 -1.41 16 13 N -0.64 -11.26 5.30 -9.74 -0.05 -11.32 16 14 C 0.50 8.80 7.73 -10.98 -0.08 8.71 16 15 O -0.51 -11.39 14.01 -14.35 -0.20 -11.59 16 16 C 0.05 0.68 5.86 36.01 0.21 0.89 16 17 O -0.32 -4.64 9.64 -48.07 -0.46 -5.10 16 18 C 0.49 6.10 6.44 31.88 0.21 6.31 16 19 O -0.53 -6.99 12.51 -19.44 -0.24 -7.23 16 20 C -0.28 -2.64 9.86 -39.33 -0.39 -3.03 16 21 C 0.07 0.54 9.76 -39.19 -0.38 0.16 16 22 C -0.01 -0.11 5.94 -83.91 -0.50 -0.61 16 23 C -0.13 -1.06 10.86 -38.98 -0.42 -1.49 16 24 C -0.22 -1.75 10.81 -39.98 -0.43 -2.19 16 25 C 0.03 0.28 11.90 -16.79 -0.20 0.08 16 26 N -0.52 -5.02 4.51 -10.56 -0.05 -5.06 16 27 H 0.42 4.16 6.14 -40.82 -0.25 3.90 16 28 C -0.09 -2.11 9.90 -39.79 -0.39 -2.51 16 29 C -0.19 -4.81 8.87 -39.26 -0.35 -5.16 16 30 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 31 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.10 2.49 6.33 -52.49 -0.33 2.16 16 33 H 0.39 5.35 8.82 -40.82 -0.36 4.99 16 34 H 0.09 0.97 8.13 -51.93 -0.42 0.54 16 35 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.11 2.75 6.26 -52.49 -0.33 2.42 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -32.88 367.17 -9.50 -42.38 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -4.63 Total: 13.48 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -5.01 Total: -16.20 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.56 Total: -33.91 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.91 Total: -23.92 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.05 Total: 12.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.88 -9.50 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782331931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.123 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds