Wall clock time and date at job start Sat Apr 11 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86793 * 120.00221 * 2 1 4 4 H 1.48497 * 109.47298 * 274.99620 * 3 2 1 5 5 H 1.48503 * 109.47247 * 34.99905 * 3 2 1 6 6 H 1.48503 * 109.47354 * 154.99645 * 3 2 1 7 7 C 1.39908 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00502 * 137.34915 * 7 2 1 9 9 C 1.41155 * 119.99754 * 317.35189 * 7 2 1 10 10 C 1.40873 * 120.16370 * 167.88399 * 9 7 2 11 11 C 1.36374 * 119.82905 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16594 * 359.97438 * 11 10 9 13 13 N 1.39239 * 119.83243 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99941 * 36.58214 * 13 12 11 15 15 O 1.21276 * 120.00111 * 355.89174 * 14 13 12 16 16 C 1.50707 * 119.99975 * 175.88375 * 14 13 12 17 17 O 1.42900 * 109.47075 * 180.02562 * 16 14 13 18 18 C 1.34994 * 116.99834 * 180.02562 * 17 16 14 19 19 O 1.21724 * 120.00270 * 359.97438 * 18 17 16 20 20 C 1.41255 * 120.00159 * 180.02562 * 18 17 16 21 21 C 1.35750 * 120.00302 * 188.39765 * 20 18 17 22 22 C 1.41595 * 119.99783 * 32.30650 * 21 20 18 23 23 C 1.38332 * 126.26335 * 187.24930 * 22 21 20 24 24 C 1.39752 * 107.07117 * 179.97438 * 23 22 21 25 25 C 1.35529 * 107.92155 * 359.75856 * 24 23 22 26 26 N 1.35732 * 108.91651 * 0.39620 * 25 24 23 27 27 H 0.96994 * 125.69196 * 179.86844 * 26 25 24 28 28 C 1.39476 * 120.33509 * 0.25583 * 12 11 10 29 29 C 1.36371 * 120.16829 * 359.48611 * 28 12 11 30 30 H 0.96994 * 119.99714 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.08350 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.91860 * 179.97438 * 11 10 9 33 33 H 0.96999 * 120.00296 * 216.59380 * 13 12 11 34 34 H 1.09000 * 109.46906 * 60.00162 * 16 14 13 35 35 H 1.08998 * 109.47205 * 300.00801 * 16 14 13 36 36 H 1.07999 * 119.99885 * 8.40148 * 20 18 17 37 37 H 1.07998 * 120.00202 * 212.30109 * 21 20 18 38 38 H 1.07994 * 126.46284 * 0.02562 * 23 22 21 39 39 H 1.07999 * 126.04566 * 179.97438 * 24 23 22 40 40 H 1.07998 * 125.54701 * 180.23916 * 25 24 23 41 41 H 1.08007 * 119.91861 * 179.74622 * 28 12 11 42 42 H 1.08002 * 120.08719 * 180.26277 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3847 2.1073 -1.3947 5 1 1.4971 2.6198 0.8030 6 1 3.5892 1.4119 0.5918 7 6 2.0083 -1.2117 -0.0005 8 1 2.8740 -1.3352 -0.6342 9 6 1.5824 -2.2728 0.8272 10 6 2.1137 -3.5654 0.6505 11 6 1.6971 -4.5857 1.4538 12 6 0.7477 -4.3518 2.4485 13 7 0.3268 -5.3987 3.2643 14 6 1.2048 -6.3438 3.6546 15 8 2.3427 -6.3244 3.2356 16 6 0.7726 -7.4246 4.6118 17 8 1.8727 -8.2990 4.8712 18 6 1.6511 -9.3290 5.7151 19 8 0.5524 -9.4791 6.2170 20 6 2.6946 -10.2321 6.0167 21 6 2.4325 -11.3600 6.7253 22 6 1.1780 -12.0032 6.5938 23 6 0.7213 -13.0682 7.3494 24 6 -0.5588 -13.3818 6.8847 25 6 -0.8604 -12.5223 5.8812 26 7 0.1889 -11.6827 5.6906 27 1 0.2331 -10.9727 5.0313 28 6 0.2135 -3.0757 2.6263 29 6 0.6243 -2.0443 1.8343 30 1 -0.4849 0.8400 0.0004 31 1 2.8486 -3.7481 -0.1195 32 1 2.1031 -5.5773 1.3193 33 1 -0.5983 -5.4479 3.5517 34 1 -0.0475 -7.9925 4.1723 35 1 0.4410 -6.9714 5.5459 36 1 3.7009 -10.0253 5.6836 37 1 3.1810 -11.7667 7.3892 38 1 1.2533 -13.5632 8.1482 39 1 -1.1967 -14.1677 7.2613 40 1 -1.7843 -12.5093 5.3220 41 1 -0.5242 -2.9029 3.3960 42 1 0.2129 -1.0558 1.9759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782331931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:30 Heat of formation + Delta-G solvation = -25.604741 kcal Electronic energy + Delta-G solvation = -27133.642608 eV Core-core repulsion = 23045.212775 eV Total energy + Delta-G solvation = -4088.429833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49932 -41.57742 -40.87126 -39.09315 -37.74143 -36.25923 -34.95416 -34.90111 -31.92902 -31.65430 -31.37756 -30.21343 -29.04628 -26.69596 -25.22129 -23.53689 -22.65518 -22.16770 -21.43611 -21.32972 -20.85593 -19.48508 -19.31048 -18.90613 -18.11629 -17.78153 -17.65535 -17.02615 -16.49647 -16.13018 -15.84535 -15.42639 -15.22705 -15.17262 -15.03959 -14.56053 -14.46929 -14.27950 -14.03339 -13.93279 -13.84268 -13.58394 -13.27973 -13.18039 -12.95288 -12.92613 -12.70984 -12.34307 -11.96880 -11.85162 -11.75716 -11.60458 -11.21247 -10.89929 -10.78034 -10.49658 -9.84812 -9.50903 -9.18706 -8.85605 -8.61318 -6.23079 -0.70737 0.78359 1.12576 1.31556 1.36627 1.38932 1.40342 1.52044 1.71616 1.85508 2.15196 2.28556 2.41127 2.50257 2.62054 3.57059 3.69147 3.89988 3.99812 4.02237 4.06650 4.28407 4.36907 4.39564 4.46310 4.47479 4.59767 4.87646 4.92299 5.03323 5.05561 5.12478 5.22697 5.25095 5.31609 5.37432 5.41485 5.60166 5.83066 5.95778 5.99545 6.06315 6.11908 6.29543 6.53122 6.55609 6.60709 6.71085 6.83661 6.95807 7.29747 8.03492 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038516 B = 0.001704 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.793679 B =16424.392782 C =16742.552384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.064 3.936 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.257 4.257 11 C -0.071 4.071 12 C -0.029 4.029 13 N -0.631 5.631 14 C 0.497 3.503 15 O -0.561 6.561 16 C 0.062 3.938 17 O -0.347 6.347 18 C 0.494 3.506 19 O -0.544 6.544 20 C -0.310 4.310 21 C 0.099 3.901 22 C -0.047 4.047 23 C -0.124 4.124 24 C -0.232 4.232 25 C 0.029 3.971 26 N -0.528 5.528 27 H 0.413 0.587 28 C -0.090 4.090 29 C -0.209 4.209 30 H 0.300 0.700 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.418 0.582 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.160 0.840 37 H 0.196 0.804 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.190 0.810 41 H 0.124 0.876 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 -21.011 14.321 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.161 4.161 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.079 3.921 10 C -0.277 4.277 11 C -0.090 4.090 12 C -0.122 4.122 13 N -0.278 5.278 14 C 0.284 3.716 15 O -0.440 6.440 16 C -0.015 4.015 17 O -0.263 6.263 18 C 0.348 3.652 19 O -0.440 6.440 20 C -0.330 4.330 21 C 0.080 3.920 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.255 4.255 25 C -0.110 4.110 26 N -0.123 5.123 27 H 0.254 0.746 28 C -0.110 4.110 29 C -0.229 4.229 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.256 0.744 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.177 0.823 37 H 0.212 0.788 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.207 0.793 41 H 0.142 0.858 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.997 -20.762 14.017 25.229 hybrid contribution -0.247 1.319 -0.604 1.472 sum -3.244 -19.443 13.413 23.842 Atomic orbital electron populations 1.69996 1.09815 1.32260 1.27128 1.26817 0.94780 1.04723 0.89756 0.85449 0.79931 0.75980 0.80027 1.17922 1.18117 1.18696 1.19734 1.12244 0.97799 1.23023 0.90484 1.17884 0.90498 0.91807 0.91910 1.20599 1.08582 0.93574 1.04927 1.20424 0.97000 0.97899 0.93722 1.17005 1.07895 0.88028 0.99241 1.42562 1.12768 1.23673 1.48758 1.20695 0.85337 0.83403 0.82147 1.90710 1.21324 1.74986 1.56950 1.22232 0.88889 0.90439 0.99987 1.86319 1.41085 1.38594 1.60307 1.20474 0.88367 0.80731 0.75640 1.90902 1.26406 1.74776 1.51923 1.21193 1.00021 0.99411 1.12389 1.21472 0.93525 0.89563 0.87425 1.18780 0.93752 1.02784 1.00359 1.22023 0.96436 0.96616 0.99842 1.21260 0.98523 1.04383 1.01353 1.22784 0.93330 0.93543 1.01306 1.42806 1.13480 1.27293 1.28735 0.74596 1.20402 1.00323 0.90951 0.99284 1.20639 1.04264 0.98170 0.99835 0.88873 0.89162 0.88149 0.74419 0.86115 0.86630 0.82286 0.78753 0.81271 0.82284 0.79308 0.85777 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -37.90 11.90 21.82 0.26 -37.64 16 2 C 0.06 3.09 4.60 85.24 0.39 3.48 16 3 Si 0.97 36.39 29.69 68.60 2.04 38.42 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -27.28 8.91 23.39 0.21 -27.07 16 8 H 0.08 4.13 8.06 -2.91 -0.02 4.11 16 9 C 0.08 4.53 5.67 -21.27 -0.12 4.41 16 10 C -0.26 -13.81 9.74 22.48 0.22 -13.59 16 11 C -0.07 -3.54 8.60 22.14 0.19 -3.35 16 12 C -0.03 -1.30 6.28 38.56 0.24 -1.05 16 13 N -0.63 -21.34 5.30 -303.11 -1.61 -22.95 16 14 C 0.50 17.28 7.73 87.66 0.68 17.96 16 15 O -0.56 -25.37 14.01 16.02 0.22 -25.15 16 16 C 0.06 1.55 5.86 71.24 0.42 1.97 16 17 O -0.35 -9.85 9.64 -52.65 -0.51 -10.36 16 18 C 0.49 11.85 6.44 68.56 0.44 12.29 16 19 O -0.54 -13.79 12.51 19.10 0.24 -13.56 16 20 C -0.31 -5.69 9.86 22.43 0.22 -5.46 16 21 C 0.10 1.33 9.76 22.52 0.22 1.55 16 22 C -0.05 -0.79 5.94 39.07 0.23 -0.56 16 23 C -0.12 -1.69 10.86 22.66 0.25 -1.44 16 24 C -0.23 -3.14 10.81 22.01 0.24 -2.90 16 25 C 0.03 0.42 11.90 83.46 0.99 1.42 16 26 N -0.53 -9.55 4.51 -187.34 -0.84 -10.39 16 27 H 0.41 7.92 6.14 -92.71 -0.57 7.35 16 28 C -0.09 -4.04 9.90 22.13 0.22 -3.82 16 29 C -0.21 -10.83 8.87 22.48 0.20 -10.63 16 30 H 0.30 12.86 8.30 -92.71 -0.77 12.09 16 31 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.10 5.03 6.33 -2.92 -0.02 5.01 16 33 H 0.42 10.25 8.82 -92.71 -0.82 9.44 16 34 H 0.12 2.29 8.13 -2.39 -0.02 2.27 16 35 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 36 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.10 5.27 6.26 -2.91 -0.02 5.25 16 Total: -1.00 -74.31 367.17 4.74 -69.58 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.30 Total: 38.85 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.24 Total: -26.80 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -2.19 Total: -70.98 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.04 Total: -49.07 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.04 Total: 38.42 kcal Total: -74.31 4.74 -69.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782331931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds