Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38386 * 120.85882 * 2 1 4 4 C 1.38325 * 119.30537 * 179.97438 * 3 2 1 5 5 N 1.31954 * 121.09222 * 0.03000 * 4 3 2 6 6 C 1.31655 * 121.89255 * 359.97438 * 5 4 3 7 7 C 1.39623 * 120.55298 * 359.73864 * 6 5 4 8 8 C 1.47713 * 120.56356 * 180.28963 * 7 6 5 9 9 O 1.21475 * 119.99920 * 186.43097 * 8 7 6 10 10 O 1.34715 * 120.00156 * 6.42514 * 8 7 6 11 11 C 1.45205 * 116.99960 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46863 * 180.02562 * 11 10 8 13 13 O 1.21275 * 119.99859 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99520 * 179.97438 * 12 11 10 15 15 C 1.37139 * 120.00463 * 4.91053 * 14 12 11 16 16 H 1.08002 * 119.99882 * 329.92017 * 15 14 12 17 17 C 1.38885 * 120.00403 * 149.92569 * 15 14 12 18 18 N 1.31420 * 120.00347 * 164.94833 * 17 15 14 19 19 Si 1.86801 * 119.99752 * 344.94457 * 17 15 14 20 20 H 1.48498 * 109.47124 * 84.89306 * 19 17 15 21 21 H 1.48509 * 109.46951 * 204.88866 * 19 17 15 22 22 H 1.48501 * 109.47299 * 324.88708 * 19 17 15 23 23 C 1.39790 * 120.00037 * 184.90488 * 14 12 11 24 24 C 1.38967 * 120.07619 * 306.01692 * 23 14 12 25 25 C 1.38078 * 119.91726 * 179.78643 * 24 23 14 26 26 C 1.38302 * 120.08393 * 0.46523 * 25 24 23 27 27 C 1.38316 * 120.15232 * 359.78716 * 26 25 24 28 28 C 1.38081 * 120.07777 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.47211 * 96.91229 * 1 2 3 30 30 H 1.09007 * 109.46600 * 336.91000 * 1 2 3 31 31 H 1.09001 * 109.46826 * 216.91621 * 1 2 3 32 32 H 1.07991 * 120.34727 * 359.96252 * 3 2 1 33 33 H 1.08003 * 119.44604 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.72644 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47125 * 300.00353 * 11 10 8 36 36 H 1.08999 * 109.46815 * 60.00246 * 11 10 8 37 37 H 0.96999 * 120.00277 * 180.02562 * 18 17 15 38 38 H 1.07994 * 120.03669 * 359.97438 * 24 23 14 39 39 H 1.08005 * 119.96177 * 180.24974 * 25 24 23 40 40 H 1.08003 * 119.92786 * 179.76605 * 26 25 24 41 41 H 1.08003 * 119.95590 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.03609 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5996 1.1505 0.0005 5 7 4.2502 0.0024 0.0005 6 6 3.6206 -1.1538 0.0004 7 6 2.2252 -1.2022 0.0058 8 6 1.5186 -2.4993 0.0122 9 8 0.3096 -2.5329 -0.1010 10 8 2.2149 -3.6451 0.1433 11 6 1.4549 -4.8824 0.1405 12 6 2.3952 -6.0497 0.2968 13 8 3.5882 -5.8578 0.3997 14 7 1.9101 -7.3069 0.3221 15 6 0.5747 -7.5312 0.1050 16 1 -0.1514 -6.7834 0.3880 17 6 0.1559 -8.7199 -0.4784 18 7 -1.1094 -9.0701 -0.4211 19 14 1.3914 -9.8210 -1.3448 20 1 2.0502 -10.7046 -0.3496 21 1 0.6900 -10.6517 -2.3565 22 1 2.4160 -8.9823 -2.0172 23 6 2.7682 -8.3823 0.5694 24 6 3.9094 -8.5550 -0.2047 25 6 4.7570 -9.6159 0.0453 26 6 4.4665 -10.5116 1.0583 27 6 3.3288 -10.3458 1.8273 28 6 2.4792 -9.2843 1.5861 29 1 -0.3633 -0.1237 -1.0201 30 1 -0.3633 0.9454 0.4031 31 1 -0.3633 -0.8217 0.6173 32 1 1.6967 2.1343 -0.0006 33 1 4.1559 2.0762 0.0001 34 1 4.1882 -2.0727 0.0007 35 1 0.7452 -4.8746 0.9678 36 1 0.9141 -4.9745 -0.8013 37 1 -1.4018 -9.9005 -0.8283 38 1 4.1345 -7.8585 -0.9987 39 1 5.6463 -9.7485 -0.5532 40 1 5.1294 -11.3427 1.2492 41 1 3.1053 -11.0469 2.6178 42 1 1.5909 -9.1557 2.1866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785893145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -30.843603 kcal Electronic energy + Delta-G solvation = -28656.655736 eV Core-core repulsion = 24567.998729 eV Total energy + Delta-G solvation = -4088.657007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96674 -40.08861 -39.46095 -37.76252 -36.29717 -35.04109 -33.96344 -32.22760 -31.92653 -30.37397 -29.97000 -28.40746 -27.49497 -25.20188 -24.70930 -22.74684 -22.12704 -21.88509 -21.02169 -19.36511 -18.26135 -18.06810 -16.91762 -16.51589 -16.46720 -16.10691 -16.04716 -15.90752 -15.39890 -14.88657 -14.59845 -14.42676 -13.94711 -13.86114 -13.60739 -13.06427 -13.03206 -12.93148 -12.89921 -12.82821 -12.70663 -12.49395 -12.25920 -12.10306 -11.97081 -11.19392 -11.04184 -10.70620 -10.57245 -10.46444 -10.37990 -10.04001 -9.79572 -9.64467 -9.51832 -9.46496 -9.02900 -8.66369 -8.24287 -7.64473 -6.64065 -4.31234 0.36394 0.95672 1.80444 1.98617 2.50641 2.54735 3.10772 3.24483 3.29073 3.38146 3.58243 3.99292 4.08312 4.22526 4.36196 4.41706 4.45197 4.65495 4.87181 4.90258 5.11452 5.33029 5.35804 5.43957 5.45578 5.50019 5.53132 5.63177 5.64991 5.66416 5.77220 5.89192 6.00543 6.10967 6.13798 6.27332 6.33462 6.56490 6.58663 6.87258 7.03592 7.06342 7.17410 7.53433 7.63441 7.74525 7.82188 8.04128 8.63123 9.03142 9.28675 10.42835 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.002995 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.579817 B = 9345.233642 C =10474.135521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.023 3.977 3 C -0.192 4.192 4 C 0.130 3.870 5 N -0.497 5.497 6 C 0.167 3.833 7 C -0.179 4.179 8 C 0.510 3.490 9 O -0.498 6.498 10 O -0.331 6.331 11 C 0.073 3.927 12 C 0.484 3.516 13 O -0.557 6.557 14 N -0.412 5.412 15 C -0.367 4.367 16 H 0.116 0.884 17 C 0.080 3.920 18 N -0.852 5.852 19 Si 0.861 3.139 20 H -0.246 1.246 21 H -0.292 1.292 22 H -0.257 1.257 23 C 0.147 3.853 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.114 4.114 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.280 0.720 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.112 12.075 1.170 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.015 3.985 3 C -0.212 4.212 4 C -0.026 4.026 5 N -0.206 5.206 6 C 0.009 3.991 7 C -0.182 4.182 8 C 0.354 3.646 9 O -0.387 6.387 10 O -0.246 6.246 11 C -0.003 4.003 12 C 0.274 3.726 13 O -0.438 6.438 14 N -0.129 5.129 15 C -0.492 4.492 16 H 0.133 0.867 17 C -0.130 4.130 18 N -0.486 5.486 19 Si 0.686 3.314 20 H -0.170 1.170 21 H -0.220 1.220 22 H -0.181 1.181 23 C 0.055 3.945 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.160 4.160 27 C -0.133 4.133 28 C -0.133 4.133 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.194 0.806 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.045 12.051 1.146 13.531 hybrid contribution -0.861 -0.752 -0.573 1.279 sum 5.184 11.299 0.573 12.445 Atomic orbital electron populations 1.21155 0.88897 1.03798 1.04422 1.20520 0.97637 0.91120 0.89201 1.22029 0.95548 0.98438 1.05143 1.23079 0.91770 0.96669 0.91065 1.67837 1.40716 0.98249 1.13822 1.23414 0.90438 0.97001 0.88201 1.20081 0.95387 0.91105 1.11642 1.20834 0.85669 0.84530 0.73544 1.90814 1.14706 1.87685 1.45524 1.86503 1.41023 1.14390 1.82678 1.22651 0.92973 0.79267 1.05417 1.19792 0.88143 0.83862 0.80789 1.90635 1.15658 1.85077 1.52445 1.41341 1.08244 1.02388 1.60880 1.19239 0.79501 1.07226 1.43209 0.86658 1.25209 0.96090 0.96763 0.94903 1.69689 1.15440 1.23262 1.40199 0.87184 0.81222 0.81817 0.81160 1.17034 1.21981 1.18091 1.17716 0.91455 0.90620 0.94738 1.21135 0.95138 0.98106 0.99172 1.20868 0.99262 0.95189 0.98530 1.20960 0.97941 0.99753 0.97368 1.20875 0.94835 0.97691 0.99873 1.21111 1.00367 0.95499 0.96334 0.89623 0.91439 0.88309 0.83916 0.82142 0.80626 0.88376 0.87590 0.91005 0.86011 0.86440 0.86723 0.86362 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.83 36.01 0.32 -0.98 16 2 C 0.02 0.26 5.95 -103.89 -0.62 -0.36 16 3 C -0.19 -1.68 9.78 -39.49 -0.39 -2.07 16 4 C 0.13 1.21 11.17 -17.47 -0.20 1.01 16 5 N -0.50 -6.15 10.34 -12.89 -0.13 -6.29 16 6 C 0.17 2.22 10.79 -17.11 -0.18 2.03 16 7 C -0.18 -2.44 5.89 -104.84 -0.62 -3.05 16 8 C 0.51 8.27 7.85 34.60 0.27 8.54 16 9 O -0.50 -8.61 13.31 -19.25 -0.26 -8.87 16 10 O -0.33 -6.01 9.06 -47.21 -0.43 -6.44 16 11 C 0.07 1.42 4.50 36.01 0.16 1.58 16 12 C 0.48 10.94 7.54 -10.99 -0.08 10.86 16 13 O -0.56 -13.50 15.29 -14.10 -0.22 -13.71 16 14 N -0.41 -9.69 2.53 -58.98 -0.15 -9.84 16 15 C -0.37 -9.12 9.01 -14.94 -0.13 -9.25 16 16 H 0.12 2.92 7.02 -52.49 -0.37 2.55 16 17 C 0.08 2.05 5.19 -17.49 -0.09 1.96 16 18 N -0.85 -22.76 13.96 55.49 0.77 -21.99 16 19 Si 0.86 20.13 23.45 -169.99 -3.99 16.14 16 20 H -0.25 -5.55 5.14 56.52 0.29 -5.26 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.26 -6.06 6.02 56.52 0.34 -5.72 16 23 C 0.15 3.33 2.60 -83.69 -0.22 3.11 16 24 C -0.12 -2.46 5.81 -39.37 -0.23 -2.69 16 25 C -0.12 -2.17 9.94 -39.62 -0.39 -2.56 16 26 C -0.14 -2.38 9.85 -39.53 -0.39 -2.77 16 27 C -0.11 -2.03 9.18 -39.61 -0.36 -2.40 16 28 C -0.11 -2.36 7.50 -39.37 -0.30 -2.65 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.51 8.06 -51.92 -0.42 0.09 16 31 H 0.10 1.22 5.99 -51.93 -0.31 0.91 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.18 2.33 7.64 -52.49 -0.40 1.93 16 35 H 0.10 1.83 7.79 -51.93 -0.40 1.43 16 36 H 0.11 2.03 8.03 -51.93 -0.42 1.62 16 37 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.12 2.66 7.63 -52.49 -0.40 2.26 16 39 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 41 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.13 2.71 8.01 -52.49 -0.42 2.29 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -30.46 354.47 -7.48 -37.94 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.99 Total: 7.39 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.45 Total: 0.33 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.49 Total: -38.12 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.90 Total: -29.02 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -3.99 Total: 16.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.46 -7.48 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785893145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds