Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38382 * 120.86113 * 2 1 4 4 C 1.38313 * 119.31158 * 179.97438 * 3 2 1 5 5 N 1.31955 * 121.09650 * 0.02775 * 4 3 2 6 6 C 1.31659 * 121.88457 * 359.97438 * 5 4 3 7 7 C 1.39617 * 120.55679 * 359.73302 * 6 5 4 8 8 C 1.47722 * 120.56811 * 180.28980 * 7 6 5 9 9 O 1.21473 * 119.99883 * 186.98592 * 8 7 6 10 10 O 1.34711 * 119.99642 * 6.98298 * 8 7 6 11 11 C 1.45206 * 116.99734 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46819 * 180.02562 * 11 10 8 13 13 O 1.21281 * 120.00407 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99734 * 180.02562 * 12 11 10 15 15 C 1.39235 * 120.00230 * 184.94749 * 14 12 11 16 16 C 1.39474 * 119.83594 * 215.21011 * 15 14 12 17 17 C 1.36375 * 120.17141 * 179.75827 * 16 15 14 18 18 C 1.40869 * 119.82646 * 0.50976 * 17 16 15 19 19 C 1.41156 * 120.16677 * 179.71791 * 18 17 16 20 20 H 1.08000 * 119.99819 * 210.28592 * 19 18 17 21 21 C 1.39905 * 119.99703 * 30.28061 * 19 18 17 22 22 N 1.30878 * 119.99765 * 8.95851 * 21 19 18 23 23 Si 1.86797 * 119.99995 * 188.95204 * 21 19 18 24 24 H 1.48500 * 109.46836 * 60.00552 * 23 21 19 25 25 H 1.48500 * 109.47186 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47160 * 300.00318 * 23 21 19 27 27 C 1.40871 * 119.67075 * 359.74455 * 18 17 16 28 28 C 1.36374 * 119.83050 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47734 * 96.21815 * 1 2 3 30 30 H 1.08998 * 109.46946 * 336.21025 * 1 2 3 31 31 H 1.09007 * 109.46893 * 216.21667 * 1 2 3 32 32 H 1.07999 * 120.34296 * 359.96471 * 3 2 1 33 33 H 1.08008 * 119.45112 * 180.02562 * 4 3 2 34 34 H 1.07996 * 119.72599 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47405 * 300.00852 * 11 10 8 36 36 H 1.09003 * 109.46722 * 60.00645 * 11 10 8 37 37 H 0.97004 * 120.00001 * 4.94507 * 14 12 11 38 38 H 1.08009 * 119.91439 * 0.02562 * 16 15 14 39 39 H 1.07996 * 120.08816 * 180.25129 * 17 16 15 40 40 H 0.97000 * 119.99543 * 179.97438 * 22 21 19 41 41 H 1.07996 * 120.08316 * 179.97438 * 27 18 17 42 42 H 1.08003 * 119.91558 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1879 0.0000 4 6 3.5995 1.1505 0.0005 5 7 4.2502 0.0025 0.0005 6 6 3.6206 -1.1537 0.0005 7 6 2.2252 -1.2022 0.0061 8 6 1.5186 -2.4994 0.0124 9 8 0.3106 -2.5336 -0.1107 10 8 2.2139 -3.6444 0.1548 11 6 1.4539 -4.8817 0.1525 12 6 2.3929 -6.0482 0.3220 13 8 3.5851 -5.8558 0.4341 14 7 1.9077 -7.3053 0.3489 15 6 2.7603 -8.3752 0.6082 16 6 2.5523 -9.5984 -0.0289 17 6 3.3861 -10.6493 0.2162 18 6 4.4531 -10.5003 1.1237 19 6 5.3169 -11.5851 1.3872 20 1 5.7868 -11.6784 2.3552 21 6 5.5642 -12.5395 0.3946 22 7 5.1401 -12.3380 -0.8270 23 14 6.4999 -14.1012 0.8128 24 1 5.7629 -14.8546 1.8591 25 1 6.6292 -14.9418 -0.4045 26 1 7.8517 -13.7486 1.3163 27 6 4.6536 -9.2634 1.7673 28 6 3.8149 -8.2198 1.5077 29 1 -0.3634 -0.1113 -1.0216 30 1 -0.3633 0.9403 0.4145 31 1 -0.3633 -0.8292 0.6072 32 1 1.6966 2.1343 -0.0006 33 1 4.1557 2.0763 0.0010 34 1 4.1881 -2.0725 0.0000 35 1 0.7378 -4.8698 0.9741 36 1 0.9204 -4.9786 -0.7931 37 1 0.9645 -7.4648 0.1877 38 1 1.7314 -9.7123 -0.7215 39 1 3.2262 -11.5947 -0.2810 40 1 5.3119 -12.9996 -1.5153 41 1 5.4693 -9.1418 2.4646 42 1 3.9671 -7.2710 2.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785893372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -56.803843 kcal Electronic energy + Delta-G solvation = -27202.709738 eV Core-core repulsion = 23112.927011 eV Total energy + Delta-G solvation = -4089.782727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28262 -40.12958 -39.41873 -37.41520 -36.62608 -34.51167 -34.19814 -33.03454 -32.15873 -29.90832 -29.53260 -28.62021 -27.95620 -25.22374 -24.60787 -22.85354 -21.84151 -21.41390 -20.85016 -19.80890 -18.47876 -17.65197 -17.34537 -16.94699 -16.75516 -16.61725 -16.37190 -16.00755 -15.22989 -15.10605 -14.79196 -14.38070 -14.00697 -13.95165 -13.41168 -13.22699 -13.14754 -13.03260 -12.87373 -12.69145 -12.63222 -12.46005 -12.14470 -11.82739 -11.41261 -11.15419 -11.10976 -10.95221 -10.77824 -10.74871 -10.03999 -10.01874 -9.85808 -9.67219 -9.58785 -9.49221 -9.24124 -8.97723 -7.60131 -6.98665 -6.72361 -4.36222 0.12283 0.76345 2.06149 2.16753 2.44978 2.95009 3.04601 3.06623 3.09339 3.27479 3.36759 3.58463 3.92979 4.00273 4.20647 4.23160 4.40014 4.56944 4.62634 4.78038 4.90831 4.95371 4.96154 5.11780 5.25367 5.29671 5.41209 5.63363 5.67061 5.78734 6.06814 6.14305 6.19683 6.35064 6.67741 6.85001 7.00748 7.13263 7.22418 7.35065 7.49274 7.55141 7.64776 7.80375 7.99361 8.16728 8.23973 8.53803 8.63160 8.85937 8.93722 10.20763 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.001843 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.624240 B =15185.853705 C =15883.353755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.024 3.976 3 C -0.192 4.192 4 C 0.135 3.865 5 N -0.495 5.495 6 C 0.170 3.830 7 C -0.185 4.185 8 C 0.516 3.484 9 O -0.501 6.501 10 O -0.323 6.323 11 C 0.054 3.946 12 C 0.497 3.503 13 O -0.507 6.507 14 N -0.644 5.644 15 C -0.005 4.005 16 C -0.113 4.113 17 C -0.146 4.146 18 C 0.106 3.894 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.071 3.929 22 N -0.802 5.802 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.210 4.210 28 C -0.077 4.077 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.397 0.603 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.281 0.719 41 H 0.097 0.903 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.234 21.139 -0.243 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.017 3.983 3 C -0.211 4.211 4 C -0.021 4.021 5 N -0.204 5.204 6 C 0.012 3.988 7 C -0.188 4.188 8 C 0.360 3.640 9 O -0.391 6.391 10 O -0.238 6.238 11 C -0.024 4.024 12 C 0.282 3.718 13 O -0.382 6.382 14 N -0.289 5.289 15 C -0.097 4.097 16 C -0.133 4.133 17 C -0.166 4.166 18 C 0.103 3.897 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.146 4.146 22 N -0.428 5.428 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.230 4.230 28 C -0.097 4.097 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.194 0.806 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.231 0.769 38 H 0.110 0.890 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.805 21.163 -0.423 22.925 hybrid contribution -1.062 -0.795 -0.155 1.335 sum -9.867 20.368 -0.577 22.640 Atomic orbital electron populations 1.21153 0.88915 1.03923 1.04277 1.20502 0.97580 0.91101 0.89160 1.22052 0.95577 0.98494 1.05019 1.23141 0.91780 0.96755 0.90394 1.67869 1.40667 0.98240 1.13635 1.23443 0.90320 0.97158 0.87861 1.20006 0.95418 0.90761 1.12632 1.20909 0.85583 0.84407 0.73068 1.90800 1.14762 1.87598 1.45925 1.86592 1.40402 1.13950 1.82870 1.22770 0.93666 0.81074 1.04850 1.19896 0.89037 0.83723 0.79157 1.90762 1.15486 1.84503 1.47446 1.42784 1.11435 1.04722 1.69994 1.17117 0.99418 0.87343 1.05773 1.20246 1.00396 0.93228 0.99442 1.20960 0.94759 0.98241 1.02603 1.17700 0.90447 0.91343 0.90168 1.19524 1.23982 1.05828 0.99440 0.90431 1.25917 0.95085 0.99177 0.94374 1.69793 1.37362 1.34097 1.01513 0.86279 0.80418 0.80715 0.78760 1.18903 1.20367 1.19021 1.20716 1.01708 0.93270 1.07312 1.20231 0.95184 0.97909 0.96376 0.89641 0.91267 0.88476 0.83763 0.81938 0.80573 0.88093 0.88141 0.76916 0.88999 0.85801 0.90856 0.88511 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 8.85 36.00 0.32 -0.62 16 2 C 0.02 0.21 5.95 -103.89 -0.62 -0.41 16 3 C -0.19 -1.30 9.78 -39.50 -0.39 -1.68 16 4 C 0.13 1.03 11.17 -17.47 -0.20 0.84 16 5 N -0.50 -5.32 10.35 -12.89 -0.13 -5.46 16 6 C 0.17 1.89 10.79 -17.11 -0.18 1.71 16 7 C -0.18 -2.00 5.89 -104.83 -0.62 -2.62 16 8 C 0.52 6.27 7.84 34.61 0.27 6.54 16 9 O -0.50 -6.31 13.31 -19.25 -0.26 -6.57 16 10 O -0.32 -4.39 9.06 -47.20 -0.43 -4.82 16 11 C 0.05 0.66 5.96 36.00 0.21 0.88 16 12 C 0.50 8.37 7.62 -10.98 -0.08 8.29 16 13 O -0.51 -10.90 14.29 -14.10 -0.20 -11.10 16 14 N -0.64 -10.73 5.30 -9.74 -0.05 -10.79 16 15 C 0.00 -0.10 6.25 -83.57 -0.52 -0.62 16 16 C -0.11 -2.51 9.90 -39.79 -0.39 -2.91 16 17 C -0.15 -3.67 8.59 -39.26 -0.34 -4.01 16 18 C 0.11 2.81 5.54 -106.80 -0.59 2.21 16 19 C -0.46 -12.03 9.04 -37.85 -0.34 -12.37 16 20 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 21 C 0.07 1.77 5.27 -17.33 -0.09 1.68 16 22 N -0.80 -20.59 10.84 55.55 0.60 -19.98 16 23 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.21 -5.26 9.74 -39.26 -0.38 -5.64 16 28 C -0.08 -1.81 8.57 -39.79 -0.34 -2.16 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.10 0.88 5.95 -51.93 -0.31 0.57 16 32 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.18 1.97 7.64 -52.49 -0.40 1.57 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.93 8.82 -40.82 -0.36 4.57 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.12 3.20 6.26 -52.49 -0.33 2.88 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.10 2.32 6.54 -52.48 -0.34 1.97 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -32.29 366.88 -8.92 -41.21 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.67 Total: 9.29 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -4.28 Total: -10.88 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.42 Total: -36.22 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.89 Total: -22.48 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.29 -8.92 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785893372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.598 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds