Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.34739 * 120.00120 * 13.76144 * 3 2 1 5 5 C 1.50701 * 119.99663 * 359.97438 * 4 3 2 6 6 C 1.53007 * 117.49583 * 188.61989 * 5 4 3 7 7 C 1.52996 * 60.00044 * 252.51629 * 6 5 4 8 8 C 1.47613 * 119.99973 * 194.03268 * 3 2 1 9 9 O 1.21490 * 120.00241 * 179.97438 * 8 3 2 10 10 O 1.34728 * 119.99970 * 0.02562 * 8 3 2 11 11 C 1.45202 * 116.99971 * 179.97438 * 10 8 3 12 12 C 1.50696 * 109.46904 * 179.97438 * 11 10 8 13 13 O 1.21285 * 120.00225 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00203 * 180.02562 * 12 11 10 15 15 C 1.39238 * 120.00242 * 176.70199 * 14 12 11 16 16 C 1.39480 * 119.83074 * 217.47871 * 15 14 12 17 17 C 1.36371 * 120.17007 * 179.75746 * 16 15 14 18 18 C 1.40873 * 119.82720 * 0.51875 * 17 16 15 19 19 C 1.41148 * 120.16587 * 179.71747 * 18 17 16 20 20 H 1.07998 * 119.99967 * 157.97350 * 19 18 17 21 21 C 1.39907 * 120.00253 * 337.97280 * 19 18 17 22 22 N 1.30879 * 119.99624 * 327.61067 * 21 19 18 23 23 Si 1.86793 * 120.00438 * 147.61291 * 21 19 18 24 24 H 1.48502 * 109.47272 * 94.98518 * 23 21 19 25 25 H 1.48500 * 109.47374 * 214.98743 * 23 21 19 26 26 H 1.48504 * 109.46801 * 334.98826 * 23 21 19 27 27 C 1.40875 * 119.67047 * 359.73972 * 18 17 16 28 28 C 1.36371 * 119.82863 * 359.97438 * 27 18 17 29 29 H 1.07997 * 120.00036 * 179.97438 * 4 3 2 30 30 H 1.08991 * 115.55484 * 334.33143 * 5 4 3 31 31 H 1.09004 * 117.49765 * 0.02562 * 6 5 4 32 32 H 1.08999 * 117.49716 * 145.02010 * 6 5 4 33 33 H 1.09004 * 117.49677 * 252.51264 * 7 6 5 34 34 H 1.08997 * 117.50146 * 107.49317 * 7 6 5 35 35 H 1.08999 * 109.47139 * 300.00047 * 11 10 8 36 36 H 1.08998 * 109.46754 * 60.00214 * 11 10 8 37 37 H 0.97002 * 119.99300 * 356.69355 * 14 12 11 38 38 H 1.08003 * 119.91758 * 0.02813 * 16 15 14 39 39 H 1.07996 * 120.09170 * 180.25522 * 17 16 15 40 40 H 0.96998 * 119.99842 * 179.97438 * 22 21 19 41 41 H 1.07993 * 120.08381 * 179.97438 * 27 18 17 42 42 H 1.07998 * 119.92207 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2422 -1.1324 -0.2776 5 6 2.4892 -2.4005 -0.5875 6 6 3.2988 -3.6944 -0.6950 7 6 2.7236 -3.0449 -1.9552 8 6 3.3055 1.2412 0.3100 9 8 4.5204 1.2417 0.3104 10 8 2.6313 2.3727 0.5934 11 6 3.4216 3.5544 0.8892 12 6 2.5031 4.7134 1.1789 13 8 1.3007 4.5587 1.1403 14 7 3.0176 5.9219 1.4808 15 6 2.1707 7.0089 1.6810 16 6 2.5483 8.2745 1.2324 17 6 1.7221 9.3430 1.4204 18 6 0.4893 9.1680 2.0792 19 6 -0.3688 10.2701 2.2829 20 1 -1.4237 10.1096 2.4493 21 6 0.1473 11.5704 2.2693 22 7 1.3638 11.7961 2.6961 23 14 -0.8998 12.9844 1.6420 24 1 -1.5768 13.6449 2.7869 25 1 -0.0349 13.9689 0.9435 26 1 -1.9201 12.4635 0.6971 27 6 0.1173 7.8877 2.5343 28 6 0.9515 6.8277 2.3338 29 1 4.3222 -1.1318 -0.2780 30 1 1.4868 -2.4673 -0.1648 31 1 4.3759 -3.6285 -0.5412 32 1 2.8289 -4.6128 -0.3428 33 1 1.8754 -3.5359 -2.4322 34 1 3.4223 -2.5516 -2.6309 35 1 4.0505 3.3626 1.7586 36 1 4.0503 3.7949 0.0319 37 1 3.9779 6.0344 1.5588 38 1 3.4956 8.4078 0.7310 39 1 2.0139 10.3215 1.0689 40 1 1.7218 12.6975 2.6863 41 1 -0.8260 7.7461 3.0405 42 1 0.6680 5.8456 2.6823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786678797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -21.169133 kcal Electronic energy + Delta-G solvation = -26628.474706 eV Core-core repulsion = 22540.237216 eV Total energy + Delta-G solvation = -4088.237490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92906 -39.58952 -38.60992 -37.37721 -36.75086 -36.58058 -34.50352 -33.41625 -33.11467 -29.98320 -29.53362 -28.39456 -25.99544 -24.68552 -23.05195 -22.28286 -21.93627 -21.55885 -20.80493 -19.86458 -18.83204 -17.69069 -17.39931 -17.01134 -16.91752 -16.56006 -16.03898 -15.22671 -15.10169 -15.00482 -14.87128 -14.19965 -14.02486 -13.89074 -13.45483 -13.37077 -12.90477 -12.87138 -12.77226 -12.65634 -12.32980 -12.18665 -12.12074 -12.02205 -11.80973 -11.49823 -11.25081 -11.17473 -11.00161 -10.99309 -10.96843 -10.56547 -10.20472 -9.81142 -9.78948 -9.50724 -9.11529 -8.74804 -7.58321 -7.19884 -6.92576 -4.30759 0.07918 1.91625 2.00873 2.47819 2.52792 2.89989 3.00724 3.03645 3.06849 3.10059 3.27815 3.30708 3.44193 3.54682 3.87182 3.93371 4.09565 4.24705 4.41181 4.46128 4.51411 4.80498 4.95468 4.98533 5.00814 5.13830 5.21963 5.26924 5.44459 5.47276 5.64207 5.93586 6.15432 6.38936 6.70701 6.89805 6.96676 7.09230 7.14761 7.24347 7.33539 7.52701 7.63250 7.83990 7.98785 8.19072 8.22526 8.50957 8.65657 8.80711 8.94984 9.98555 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.001707 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.664124 B =16396.447212 C =16969.514178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.248 3.752 3 C -0.090 4.090 4 C 0.057 3.943 5 C -0.167 4.167 6 C -0.158 4.158 7 C -0.153 4.153 8 C 0.521 3.479 9 O -0.500 6.500 10 O -0.320 6.320 11 C 0.053 3.947 12 C 0.496 3.504 13 O -0.509 6.509 14 N -0.641 5.641 15 C -0.026 4.026 16 C -0.098 4.098 17 C -0.171 4.171 18 C 0.113 3.887 19 C -0.464 4.464 20 H 0.083 0.917 21 C 0.088 3.912 22 N -0.768 5.768 23 Si 0.897 3.103 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.224 4.224 28 C -0.064 4.064 29 H 0.161 0.839 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.396 0.604 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.095 0.905 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.555 -23.378 -6.448 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.068 4.068 3 C -0.094 4.094 4 C 0.034 3.966 5 C -0.185 4.185 6 C -0.195 4.195 7 C -0.190 4.190 8 C 0.365 3.635 9 O -0.390 6.390 10 O -0.234 6.234 11 C -0.024 4.024 12 C 0.280 3.720 13 O -0.384 6.384 14 N -0.286 5.286 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.191 4.191 18 C 0.111 3.889 19 C -0.491 4.491 20 H 0.101 0.899 21 C -0.134 4.134 22 N -0.390 5.390 23 Si 0.720 3.280 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.244 4.244 28 C -0.084 4.084 29 H 0.178 0.822 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.466 -23.255 -6.406 25.563 hybrid contribution 0.736 1.046 -0.098 1.283 sum 9.202 -22.208 -6.504 24.904 Atomic orbital electron populations 1.81274 1.11628 1.06180 1.07478 1.25171 0.92223 0.94692 0.94710 1.16630 0.85472 0.93053 1.14288 1.23863 1.00951 0.89796 0.81958 1.21506 1.01245 0.91680 1.04073 1.23092 1.00253 0.94979 1.01180 1.23065 1.04016 1.02112 0.89811 1.20621 0.85721 0.83472 0.73735 1.90886 1.13722 1.85437 1.48918 1.86659 1.39853 1.17814 1.79116 1.22824 0.93209 0.82694 1.03719 1.19899 0.89166 0.83763 0.79161 1.90766 1.14810 1.82883 1.49957 1.42701 1.09611 1.07634 1.68680 1.16988 0.95515 0.85638 1.13625 1.20153 0.98859 0.92153 1.00687 1.20614 0.96584 0.97044 1.04880 1.17616 0.91439 0.91983 0.87901 1.19536 0.96246 0.90039 1.43283 0.89922 1.25955 0.94980 1.00733 0.91725 1.69946 1.16613 1.23779 1.28698 0.86494 0.81157 0.80067 0.80290 1.19414 1.19846 1.18055 1.20599 1.01026 0.93478 1.09264 1.20311 0.93578 0.97836 0.96652 0.82169 0.86031 0.87547 0.87611 0.87520 0.87598 0.87951 0.87871 0.76995 0.89138 0.87408 0.90535 0.88658 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.70 18.54 41.84 0.78 -4.93 16 2 C 0.25 2.97 13.41 -22.47 -0.30 2.67 16 3 C -0.09 -0.82 5.83 -105.39 -0.61 -1.43 16 4 C 0.06 0.32 9.31 -35.55 -0.33 -0.01 16 5 C -0.17 -0.78 5.46 -91.77 -0.50 -1.29 16 6 C -0.16 -0.43 10.23 -26.73 -0.27 -0.70 16 7 C -0.15 -0.51 10.23 -26.73 -0.27 -0.79 16 8 C 0.52 5.88 7.89 34.56 0.27 6.15 16 9 O -0.50 -5.75 16.05 -19.26 -0.31 -6.06 16 10 O -0.32 -4.52 9.30 -47.25 -0.44 -4.96 16 11 C 0.05 0.66 5.95 36.00 0.21 0.87 16 12 C 0.50 8.63 7.72 -10.99 -0.08 8.54 16 13 O -0.51 -11.41 14.12 -14.11 -0.20 -11.61 16 14 N -0.64 -11.01 5.30 -9.74 -0.05 -11.06 16 15 C -0.03 -0.58 6.25 -83.57 -0.52 -1.10 16 16 C -0.10 -2.22 9.90 -39.79 -0.39 -2.61 16 17 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 18 C 0.11 3.04 5.57 -106.80 -0.60 2.44 16 19 C -0.46 -12.25 8.94 -37.85 -0.34 -12.59 16 20 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 21 C 0.09 2.16 4.77 -17.33 -0.08 2.08 16 22 N -0.77 -19.21 11.78 55.55 0.65 -18.55 16 23 Si 0.90 18.15 29.66 -169.99 -5.04 13.10 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 27 C -0.22 -5.75 9.74 -39.26 -0.38 -6.14 16 28 C -0.06 -1.56 8.59 -39.79 -0.34 -1.90 16 29 H 0.16 0.59 7.54 -52.49 -0.40 0.20 16 30 H 0.12 0.71 7.25 -51.93 -0.38 0.33 16 31 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 5.11 8.82 -40.82 -0.36 4.75 16 38 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.11 2.76 6.52 -52.49 -0.34 2.42 16 40 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 41 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.10 2.48 6.45 -52.49 -0.34 2.14 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -33.74 382.47 -8.49 -42.23 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.75 Total: 6.56 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -4.89 Total: -10.50 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.38 Total: -34.54 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.95 Total: -22.62 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.04 Total: 13.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -8.49 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786678797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.061 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds