Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.34739 * 120.00120 * 13.76144 * 3 2 1 5 5 C 1.50701 * 119.99663 * 359.97438 * 4 3 2 6 6 C 1.53007 * 117.49583 * 188.61989 * 5 4 3 7 7 C 1.52996 * 60.00044 * 252.51629 * 6 5 4 8 8 C 1.47613 * 119.99973 * 194.03268 * 3 2 1 9 9 O 1.21490 * 120.00241 * 179.97438 * 8 3 2 10 10 O 1.34728 * 119.99970 * 0.02562 * 8 3 2 11 11 C 1.45202 * 116.99971 * 179.97438 * 10 8 3 12 12 C 1.50696 * 109.46904 * 179.97438 * 11 10 8 13 13 O 1.21285 * 120.00225 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00203 * 180.02562 * 12 11 10 15 15 C 1.39238 * 120.00242 * 176.70199 * 14 12 11 16 16 C 1.39480 * 119.83074 * 217.47871 * 15 14 12 17 17 C 1.36371 * 120.17007 * 179.75746 * 16 15 14 18 18 C 1.40873 * 119.82720 * 0.51875 * 17 16 15 19 19 C 1.41148 * 120.16587 * 179.71747 * 18 17 16 20 20 H 1.07998 * 119.99967 * 157.97350 * 19 18 17 21 21 C 1.39907 * 120.00253 * 337.97280 * 19 18 17 22 22 N 1.30879 * 119.99624 * 327.61067 * 21 19 18 23 23 Si 1.86793 * 120.00438 * 147.61291 * 21 19 18 24 24 H 1.48502 * 109.47272 * 94.98518 * 23 21 19 25 25 H 1.48500 * 109.47374 * 214.98743 * 23 21 19 26 26 H 1.48504 * 109.46801 * 334.98826 * 23 21 19 27 27 C 1.40875 * 119.67047 * 359.73972 * 18 17 16 28 28 C 1.36371 * 119.82863 * 359.97438 * 27 18 17 29 29 H 1.07997 * 120.00036 * 179.97438 * 4 3 2 30 30 H 1.08991 * 115.55484 * 334.33143 * 5 4 3 31 31 H 1.09004 * 117.49765 * 0.02562 * 6 5 4 32 32 H 1.08999 * 117.49716 * 145.02010 * 6 5 4 33 33 H 1.09004 * 117.49677 * 252.51264 * 7 6 5 34 34 H 1.08997 * 117.50146 * 107.49317 * 7 6 5 35 35 H 1.08999 * 109.47139 * 300.00047 * 11 10 8 36 36 H 1.08998 * 109.46754 * 60.00214 * 11 10 8 37 37 H 0.97002 * 119.99300 * 356.69355 * 14 12 11 38 38 H 1.08003 * 119.91758 * 0.02813 * 16 15 14 39 39 H 1.07996 * 120.09170 * 180.25522 * 17 16 15 40 40 H 0.96998 * 119.99842 * 179.97438 * 22 21 19 41 41 H 1.07993 * 120.08381 * 179.97438 * 27 18 17 42 42 H 1.07998 * 119.92207 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2422 -1.1324 -0.2776 5 6 2.4892 -2.4005 -0.5875 6 6 3.2988 -3.6944 -0.6950 7 6 2.7236 -3.0449 -1.9552 8 6 3.3055 1.2412 0.3100 9 8 4.5204 1.2417 0.3104 10 8 2.6313 2.3727 0.5934 11 6 3.4216 3.5544 0.8892 12 6 2.5031 4.7134 1.1789 13 8 1.3007 4.5587 1.1403 14 7 3.0176 5.9219 1.4808 15 6 2.1707 7.0089 1.6810 16 6 2.5483 8.2745 1.2324 17 6 1.7221 9.3430 1.4204 18 6 0.4893 9.1680 2.0792 19 6 -0.3688 10.2701 2.2829 20 1 -1.4237 10.1096 2.4493 21 6 0.1473 11.5704 2.2693 22 7 1.3638 11.7961 2.6961 23 14 -0.8998 12.9844 1.6420 24 1 -1.5768 13.6449 2.7869 25 1 -0.0349 13.9689 0.9435 26 1 -1.9201 12.4635 0.6971 27 6 0.1173 7.8877 2.5343 28 6 0.9515 6.8277 2.3338 29 1 4.3222 -1.1318 -0.2780 30 1 1.4868 -2.4673 -0.1648 31 1 4.3759 -3.6285 -0.5412 32 1 2.8289 -4.6128 -0.3428 33 1 1.8754 -3.5359 -2.4322 34 1 3.4223 -2.5516 -2.6309 35 1 4.0505 3.3626 1.7586 36 1 4.0503 3.7949 0.0319 37 1 3.9779 6.0344 1.5588 38 1 3.4956 8.4078 0.7310 39 1 2.0139 10.3215 1.0689 40 1 1.7218 12.6975 2.6863 41 1 -0.8260 7.7461 3.0405 42 1 0.6680 5.8456 2.6823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786678797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -40.187750 kcal Electronic energy + Delta-G solvation = -26629.299415 eV Core-core repulsion = 22540.237216 eV Total energy + Delta-G solvation = -4089.062200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87239 -41.03072 -39.27327 -38.95043 -37.63433 -37.52333 -36.22563 -34.87889 -34.07285 -31.60973 -31.36210 -29.79916 -26.99382 -26.14957 -23.62498 -23.29065 -23.00108 -22.65005 -22.21927 -21.41507 -19.63701 -19.31511 -18.86607 -17.87871 -17.83539 -17.70418 -17.35397 -17.00676 -16.25188 -15.83137 -15.62753 -15.58821 -15.19225 -15.09433 -14.79180 -14.50982 -14.36515 -14.08051 -13.95896 -13.84255 -13.77576 -13.72576 -13.34543 -12.86242 -12.80175 -12.70627 -12.40478 -12.35825 -12.20603 -11.98185 -11.95126 -11.93019 -11.62285 -11.39877 -11.19787 -10.83624 -10.52501 -10.37512 -9.51121 -9.05893 -8.76272 -6.26679 -0.51237 0.75724 1.04907 1.10956 1.16116 1.35034 1.40111 1.52648 1.57937 1.69836 2.18759 2.27171 2.38727 2.61428 2.71555 2.91432 3.30448 3.57785 3.68906 3.73291 3.84196 3.98465 4.06203 4.08027 4.08428 4.37437 4.44920 4.56216 4.80630 4.83628 4.87109 4.98389 5.06146 5.09477 5.12427 5.14871 5.23772 5.26559 5.39467 5.61033 5.83026 5.98368 6.04869 6.28070 6.32549 6.47687 6.58246 6.65290 6.86043 6.95163 7.31023 8.17930 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.001707 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.664124 B =16396.447212 C =16969.514178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.272 3.728 3 C -0.130 4.130 4 C 0.114 3.886 5 C -0.195 4.195 6 C -0.139 4.139 7 C -0.149 4.149 8 C 0.529 3.471 9 O -0.503 6.503 10 O -0.353 6.353 11 C 0.062 3.938 12 C 0.495 3.505 13 O -0.565 6.565 14 N -0.631 5.631 15 C -0.011 4.011 16 C -0.094 4.094 17 C -0.189 4.189 18 C 0.084 3.916 19 C -0.505 4.505 20 H 0.073 0.927 21 C 0.054 3.946 22 N -0.795 5.795 23 Si 0.972 3.028 24 H -0.259 1.259 25 H -0.258 1.258 26 H -0.264 1.264 27 C -0.248 4.248 28 C -0.077 4.077 29 H 0.191 0.809 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.296 0.704 41 H 0.089 0.911 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.927 -24.804 -7.735 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.042 4.042 3 C -0.135 4.135 4 C 0.092 3.908 5 C -0.214 4.214 6 C -0.175 4.175 7 C -0.186 4.186 8 C 0.373 3.627 9 O -0.393 6.393 10 O -0.268 6.268 11 C -0.014 4.014 12 C 0.283 3.717 13 O -0.444 6.444 14 N -0.278 5.278 15 C -0.104 4.104 16 C -0.114 4.114 17 C -0.209 4.209 18 C 0.081 3.919 19 C -0.532 4.532 20 H 0.091 0.909 21 C -0.166 4.166 22 N -0.418 5.418 23 Si 0.792 3.208 24 H -0.184 1.184 25 H -0.182 1.182 26 H -0.188 1.188 27 C -0.268 4.268 28 C -0.097 4.097 29 H 0.208 0.792 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.260 0.740 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.902 -24.704 -7.685 28.478 hybrid contribution -0.172 1.204 0.282 1.248 sum 11.731 -23.500 -7.402 27.289 Atomic orbital electron populations 1.81275 1.13466 1.08125 1.10366 1.25660 0.92826 0.92958 0.92800 1.16572 0.83826 0.93701 1.19409 1.24297 1.02099 0.88417 0.76017 1.21582 1.01227 0.92549 1.06001 1.23256 1.01052 0.93589 0.99619 1.23205 1.04391 1.01542 0.89492 1.20705 0.85728 0.82989 0.73241 1.90876 1.13463 1.85378 1.49564 1.86642 1.41402 1.18937 1.79852 1.22822 0.91571 0.80537 1.06495 1.20799 0.89133 0.84624 0.77183 1.90755 1.17688 1.83828 1.52099 1.42562 1.10390 1.06514 1.68354 1.17043 0.95057 0.87166 1.11151 1.20457 0.99802 0.91314 0.99816 1.20660 0.96857 0.97723 1.05628 1.17932 0.92610 0.92419 0.88923 1.19723 0.95992 0.91561 1.45958 0.90858 1.26710 0.96324 1.02555 0.91055 1.69931 1.17948 1.25190 1.28729 0.85369 0.79215 0.76617 0.79635 1.18388 1.18211 1.18760 1.20704 1.01528 0.94129 1.10413 1.20413 0.94730 0.97130 0.97446 0.79165 0.87677 0.85520 0.86962 0.87454 0.86371 0.84633 0.84621 0.73998 0.85226 0.88092 0.89327 0.89302 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.12 18.54 19.00 0.35 -13.77 16 2 C 0.27 6.68 13.41 88.33 1.18 7.87 16 3 C -0.13 -2.20 5.83 -20.36 -0.12 -2.32 16 4 C 0.11 0.94 9.31 24.88 0.23 1.17 16 5 C -0.20 -1.40 5.46 -11.54 -0.06 -1.46 16 6 C -0.14 -0.26 10.23 30.60 0.31 0.06 16 7 C -0.15 -0.58 10.23 30.59 0.31 -0.26 16 8 C 0.53 10.89 7.89 70.30 0.55 11.44 16 9 O -0.50 -9.87 16.05 19.87 0.32 -9.55 16 10 O -0.35 -9.55 9.30 -49.99 -0.47 -10.02 16 11 C 0.06 1.38 5.95 71.23 0.42 1.81 16 12 C 0.50 16.68 7.72 87.66 0.68 17.35 16 13 O -0.57 -25.81 14.12 15.75 0.22 -25.59 16 14 N -0.63 -20.45 5.30 -303.11 -1.61 -22.06 16 15 C -0.01 -0.49 6.25 38.56 0.24 -0.25 16 16 C -0.09 -4.16 9.90 22.13 0.22 -3.94 16 17 C -0.19 -9.75 8.74 22.48 0.20 -9.55 16 18 C 0.08 4.69 5.57 -21.27 -0.12 4.57 16 19 C -0.51 -27.93 8.94 23.39 0.21 -27.72 16 20 H 0.07 4.01 8.02 -2.91 -0.02 3.99 16 21 C 0.05 2.67 4.77 85.24 0.41 3.08 16 22 N -0.79 -40.18 11.78 21.82 0.26 -39.93 16 23 Si 0.97 37.57 29.66 68.60 2.03 39.60 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 25 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 C -0.25 -13.47 9.74 22.48 0.22 -13.25 16 28 C -0.08 -3.89 8.59 22.13 0.19 -3.70 16 29 H 0.19 0.48 7.54 -2.91 -0.02 0.46 16 30 H 0.11 1.18 7.25 -2.39 -0.02 1.16 16 31 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.42 9.42 8.82 -92.71 -0.82 8.60 16 38 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 39 H 0.10 5.26 6.52 -2.91 -0.02 5.24 16 40 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 41 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 4.95 6.45 -2.91 -0.02 4.93 16 Total: -1.00 -79.08 382.47 6.46 -72.61 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.27 Total: 23.79 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.08 Total: -15.10 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.00 Total: -75.75 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: 0.08 Total: -45.15 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -79.08 6.46 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786678797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.424 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds