Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.34729 * 119.99937 * 167.01268 * 3 2 1 5 5 C 1.50703 * 120.00010 * 187.10494 * 4 3 2 6 6 C 1.53005 * 117.49775 * 178.58081 * 5 4 3 7 7 C 1.53001 * 117.50146 * 247.24207 * 5 4 3 8 8 C 1.47620 * 120.00118 * 347.01107 * 3 2 1 9 9 O 1.21484 * 120.00408 * 186.27024 * 8 3 2 10 10 O 1.34733 * 119.99892 * 6.27319 * 8 3 2 11 11 C 1.45191 * 116.99867 * 179.97438 * 10 8 3 12 12 C 1.50704 * 109.47403 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99565 * 359.97438 * 12 11 10 14 14 N 1.34768 * 120.00403 * 179.97438 * 12 11 10 15 15 C 1.39240 * 120.00062 * 175.00318 * 14 12 11 16 16 C 1.39476 * 119.83225 * 215.98539 * 15 14 12 17 17 C 1.36379 * 120.16668 * 179.76418 * 16 15 14 18 18 C 1.40874 * 119.82880 * 0.51002 * 17 16 15 19 19 C 1.41144 * 120.16462 * 179.72252 * 18 17 16 20 20 H 1.07996 * 120.00248 * 169.58467 * 19 18 17 21 21 C 1.39905 * 120.00242 * 349.58217 * 19 18 17 22 22 N 1.30872 * 119.99989 * 321.47425 * 21 19 18 23 23 Si 1.86804 * 120.00204 * 141.47003 * 21 19 18 24 24 H 1.48497 * 109.47164 * 94.99643 * 23 21 19 25 25 H 1.48497 * 109.47241 * 215.00041 * 23 21 19 26 26 H 1.48503 * 109.47020 * 334.99563 * 23 21 19 27 27 C 1.40870 * 119.66570 * 359.74349 * 18 17 16 28 28 C 1.36365 * 119.83399 * 0.02562 * 27 18 17 29 29 H 1.08001 * 120.00080 * 7.11248 * 4 3 2 30 30 H 1.08998 * 115.54915 * 32.91450 * 5 4 3 31 31 H 1.09003 * 117.50111 * 215.00366 * 6 5 4 32 32 H 1.09003 * 117.50241 * 0.02640 * 6 5 4 33 33 H 1.08998 * 117.49662 * 359.97323 * 7 5 4 34 34 H 1.08993 * 117.49919 * 145.00173 * 7 5 4 35 35 H 1.08998 * 109.47723 * 300.00055 * 11 10 8 36 36 H 1.09004 * 109.47300 * 59.99943 * 11 10 8 37 37 H 0.97000 * 120.00053 * 355.01068 * 14 12 11 38 38 H 1.07997 * 119.92135 * 0.02562 * 16 15 14 39 39 H 1.08004 * 120.08439 * 180.25885 * 17 16 15 40 40 H 0.97000 * 119.99945 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.07874 * 179.97438 * 27 18 17 42 42 H 1.07997 * 119.91870 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2411 1.1379 -0.2622 5 6 4.7394 1.1072 -0.4206 6 6 5.4421 2.4257 -0.7505 7 6 5.5773 1.8144 0.6464 8 6 3.3066 -1.2447 0.2873 9 8 4.5160 -1.2215 0.4000 10 8 2.6395 -2.4073 0.4246 11 6 3.4305 -3.5919 0.7058 12 6 2.5204 -4.7871 0.8247 13 8 1.3229 -4.6535 0.6865 14 7 3.0371 -6.0044 1.0846 15 6 2.1904 -7.0891 1.2976 16 6 2.5357 -8.0660 2.2313 17 6 1.7092 -9.1288 2.4488 18 6 0.5093 -9.2440 1.7198 19 6 -0.3485 -10.3440 1.9350 20 1 -1.3393 -10.3483 1.5054 21 6 0.0848 -11.4288 2.7049 22 7 1.3214 -11.8464 2.6097 23 14 -1.1018 -12.2813 3.8688 24 1 -1.7017 -13.4580 3.1900 25 1 -0.3704 -12.7289 5.0812 26 1 -2.1768 -11.3347 4.2607 27 6 0.1701 -8.2560 0.7747 28 6 1.0043 -7.1966 0.5716 29 1 2.7069 2.0716 -0.3588 30 1 5.1472 0.1963 -0.8588 31 1 6.3123 2.3822 -1.4055 32 1 4.8207 3.3155 -0.8524 33 1 5.0448 2.3023 1.4628 34 1 6.5364 1.3688 0.9103 35 1 4.1406 -3.7556 -0.1047 36 1 3.9727 -3.4531 1.6412 37 1 3.9988 -6.1249 1.1234 38 1 3.4579 -7.9784 2.7866 39 1 1.9759 -9.8822 3.1752 40 1 1.6219 -12.5983 3.1437 41 1 -0.7480 -8.3379 0.2118 42 1 0.7458 -6.4386 -0.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786678798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -13.872582 kcal Electronic energy + Delta-G solvation = -26903.747769 eV Core-core repulsion = 22815.826680 eV Total energy + Delta-G solvation = -4087.921088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98119 -39.59538 -38.32311 -37.27041 -36.92676 -36.42549 -34.52559 -33.38424 -33.16065 -29.97870 -29.48291 -28.37780 -25.89363 -24.72268 -22.91494 -22.84446 -21.69609 -20.79349 -20.70210 -19.82432 -19.38115 -17.56171 -17.41553 -17.04777 -16.80802 -16.38901 -16.00341 -15.24354 -15.11340 -14.82061 -14.71763 -14.14869 -14.00051 -13.88993 -13.43907 -13.33788 -13.23207 -12.84070 -12.70751 -12.61813 -12.30439 -12.10834 -12.05884 -12.05206 -11.69177 -11.41261 -11.20084 -11.15304 -11.01607 -10.95897 -10.58096 -10.44020 -10.24198 -9.74885 -9.73187 -9.53141 -9.09955 -8.67099 -7.56284 -7.27162 -7.01066 -4.28568 0.11306 1.97096 2.01990 2.48087 2.53449 2.87988 3.01181 3.06726 3.08395 3.11148 3.28958 3.31476 3.45451 3.66108 3.82691 4.18678 4.25672 4.34896 4.39265 4.48348 4.67471 4.82664 4.96876 5.00994 5.12407 5.14990 5.31396 5.41928 5.61031 5.66670 5.69684 6.04143 6.18037 6.43997 6.74556 6.91116 6.92975 7.12016 7.15886 7.27848 7.36679 7.55014 7.66193 7.87774 8.00342 8.21173 8.24610 8.50930 8.67798 8.80107 8.97304 9.86440 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.001816 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.096406 B =15413.087926 C =16091.542958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.246 3.754 3 C -0.090 4.090 4 C 0.056 3.944 5 C -0.149 4.149 6 C -0.174 4.174 7 C -0.146 4.146 8 C 0.516 3.484 9 O -0.490 6.490 10 O -0.322 6.322 11 C 0.054 3.946 12 C 0.494 3.506 13 O -0.510 6.510 14 N -0.640 5.640 15 C -0.036 4.036 16 C -0.095 4.095 17 C -0.186 4.186 18 C 0.108 3.892 19 C -0.459 4.459 20 H 0.084 0.916 21 C 0.092 3.908 22 N -0.753 5.753 23 Si 0.895 3.105 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.255 1.255 27 C -0.232 4.232 28 C -0.061 4.061 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.285 0.715 41 H 0.094 0.906 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.482 22.174 -3.371 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.070 4.070 3 C -0.095 4.095 4 C 0.034 3.966 5 C -0.167 4.167 6 C -0.211 4.211 7 C -0.183 4.183 8 C 0.360 3.640 9 O -0.379 6.379 10 O -0.237 6.237 11 C -0.024 4.024 12 C 0.279 3.721 13 O -0.386 6.386 14 N -0.284 5.284 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.206 4.206 18 C 0.106 3.894 19 C -0.485 4.485 20 H 0.102 0.898 21 C -0.133 4.133 22 N -0.375 5.375 23 Si 0.718 3.282 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.179 1.179 27 C -0.252 4.252 28 C -0.081 4.081 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.397 22.044 -3.359 24.603 hybrid contribution 0.609 -0.718 0.645 1.141 sum 11.006 21.326 -2.714 24.152 Atomic orbital electron populations 1.81285 1.11639 1.05813 1.07672 1.25175 0.92115 0.95032 0.94661 1.16592 0.85249 0.93040 1.14607 1.23845 0.95180 0.95718 0.81887 1.21655 0.89317 0.99040 1.06696 1.23162 1.03113 0.95551 0.99284 1.22944 1.01215 1.01818 0.92352 1.20703 0.85705 0.83541 0.74070 1.90852 1.13956 1.86452 1.46680 1.86668 1.40338 1.15718 1.80947 1.22798 0.93240 0.82410 1.03915 1.19898 0.89006 0.83584 0.79622 1.90753 1.15141 1.84623 1.48033 1.42676 1.09307 1.06627 1.69828 1.16972 0.96724 0.91910 1.07183 1.20133 0.99009 0.95524 0.96885 1.20743 0.96908 0.98973 1.03944 1.17598 0.91211 0.91756 0.88876 1.19571 1.01215 1.00284 1.27441 0.89802 1.26046 0.95349 0.96059 0.95800 1.70000 1.18269 1.19261 1.29932 0.86517 0.81899 0.79633 0.80160 1.19286 1.19733 1.17874 1.20498 1.01585 0.98566 1.04556 1.20342 0.93723 0.96658 0.97404 0.83199 0.84041 0.87841 0.88266 0.88317 0.87659 0.88117 0.87974 0.77085 0.89277 0.86742 0.90370 0.88808 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.70 18.54 41.83 0.78 -4.93 16 2 C 0.25 2.90 14.98 -22.48 -0.34 2.57 16 3 C -0.09 -0.80 5.82 -105.39 -0.61 -1.42 16 4 C 0.06 0.30 9.42 -35.55 -0.33 -0.03 16 5 C -0.15 -0.80 4.37 -91.77 -0.40 -1.20 16 6 C -0.17 -0.60 10.24 -26.69 -0.27 -0.87 16 7 C -0.15 -0.66 10.24 -26.69 -0.27 -0.93 16 8 C 0.52 5.69 7.80 34.56 0.27 5.96 16 9 O -0.49 -5.25 13.19 -19.25 -0.25 -5.50 16 10 O -0.32 -4.52 9.31 -47.26 -0.44 -4.96 16 11 C 0.05 0.67 5.96 36.01 0.21 0.88 16 12 C 0.49 8.66 7.74 -10.99 -0.09 8.57 16 13 O -0.51 -11.49 13.97 -14.11 -0.20 -11.69 16 14 N -0.64 -11.08 5.30 -9.74 -0.05 -11.13 16 15 C -0.04 -0.82 6.29 -83.57 -0.53 -1.34 16 16 C -0.10 -2.17 9.90 -39.79 -0.39 -2.57 16 17 C -0.19 -4.75 8.85 -39.26 -0.35 -5.10 16 18 C 0.11 2.91 5.68 -106.80 -0.61 2.30 16 19 C -0.46 -12.07 8.93 -37.86 -0.34 -12.41 16 20 H 0.08 2.15 8.05 -52.49 -0.42 1.72 16 21 C 0.09 2.23 4.76 -17.34 -0.08 2.14 16 22 N -0.75 -18.50 11.47 55.55 0.64 -17.86 16 23 Si 0.90 17.92 29.68 -169.99 -5.05 12.87 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.23 -6.00 9.74 -39.26 -0.38 -6.38 16 28 C -0.06 -1.51 8.61 -39.79 -0.34 -1.85 16 29 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 30 H 0.14 0.97 6.31 -51.93 -0.33 0.64 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 5.15 8.82 -40.82 -0.36 4.79 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 2.95 5.99 -52.48 -0.31 2.63 16 40 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 41 H 0.09 2.32 8.06 -52.48 -0.42 1.89 16 42 H 0.10 2.56 6.28 -52.49 -0.33 2.23 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -33.32 378.86 -8.41 -41.73 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.69 Total: 7.42 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -4.85 Total: -11.67 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 1.36 Total: -33.92 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.89 Total: -22.15 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.05 Total: 12.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.32 -8.41 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786678798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.858 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds