Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.34729 * 119.99937 * 167.01268 * 3 2 1 5 5 C 1.50703 * 120.00010 * 187.10494 * 4 3 2 6 6 C 1.53005 * 117.49775 * 178.58081 * 5 4 3 7 7 C 1.53001 * 117.50146 * 247.24207 * 5 4 3 8 8 C 1.47620 * 120.00118 * 347.01107 * 3 2 1 9 9 O 1.21484 * 120.00408 * 186.27024 * 8 3 2 10 10 O 1.34733 * 119.99892 * 6.27319 * 8 3 2 11 11 C 1.45191 * 116.99867 * 179.97438 * 10 8 3 12 12 C 1.50704 * 109.47403 * 180.02562 * 11 10 8 13 13 O 1.21284 * 119.99565 * 359.97438 * 12 11 10 14 14 N 1.34768 * 120.00403 * 179.97438 * 12 11 10 15 15 C 1.39240 * 120.00062 * 175.00318 * 14 12 11 16 16 C 1.39476 * 119.83225 * 215.98539 * 15 14 12 17 17 C 1.36379 * 120.16668 * 179.76418 * 16 15 14 18 18 C 1.40874 * 119.82880 * 0.51002 * 17 16 15 19 19 C 1.41144 * 120.16462 * 179.72252 * 18 17 16 20 20 H 1.07996 * 120.00248 * 169.58467 * 19 18 17 21 21 C 1.39905 * 120.00242 * 349.58217 * 19 18 17 22 22 N 1.30872 * 119.99989 * 321.47425 * 21 19 18 23 23 Si 1.86804 * 120.00204 * 141.47003 * 21 19 18 24 24 H 1.48497 * 109.47164 * 94.99643 * 23 21 19 25 25 H 1.48497 * 109.47241 * 215.00041 * 23 21 19 26 26 H 1.48503 * 109.47020 * 334.99563 * 23 21 19 27 27 C 1.40870 * 119.66570 * 359.74349 * 18 17 16 28 28 C 1.36365 * 119.83399 * 0.02562 * 27 18 17 29 29 H 1.08001 * 120.00080 * 7.11248 * 4 3 2 30 30 H 1.08998 * 115.54915 * 32.91450 * 5 4 3 31 31 H 1.09003 * 117.50111 * 215.00366 * 6 5 4 32 32 H 1.09003 * 117.50241 * 0.02640 * 6 5 4 33 33 H 1.08998 * 117.49662 * 359.97323 * 7 5 4 34 34 H 1.08993 * 117.49919 * 145.00173 * 7 5 4 35 35 H 1.08998 * 109.47723 * 300.00055 * 11 10 8 36 36 H 1.09004 * 109.47300 * 59.99943 * 11 10 8 37 37 H 0.97000 * 120.00053 * 355.01068 * 14 12 11 38 38 H 1.07997 * 119.92135 * 0.02562 * 16 15 14 39 39 H 1.08004 * 120.08439 * 180.25885 * 17 16 15 40 40 H 0.97000 * 119.99945 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.07874 * 179.97438 * 27 18 17 42 42 H 1.07997 * 119.91870 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2411 1.1379 -0.2622 5 6 4.7394 1.1072 -0.4206 6 6 5.4421 2.4257 -0.7505 7 6 5.5773 1.8144 0.6464 8 6 3.3066 -1.2447 0.2873 9 8 4.5160 -1.2215 0.4000 10 8 2.6395 -2.4073 0.4246 11 6 3.4305 -3.5919 0.7058 12 6 2.5204 -4.7871 0.8247 13 8 1.3229 -4.6535 0.6865 14 7 3.0371 -6.0044 1.0846 15 6 2.1904 -7.0891 1.2976 16 6 2.5357 -8.0660 2.2313 17 6 1.7092 -9.1288 2.4488 18 6 0.5093 -9.2440 1.7198 19 6 -0.3485 -10.3440 1.9350 20 1 -1.3393 -10.3483 1.5054 21 6 0.0848 -11.4288 2.7049 22 7 1.3214 -11.8464 2.6097 23 14 -1.1018 -12.2813 3.8688 24 1 -1.7017 -13.4580 3.1900 25 1 -0.3704 -12.7289 5.0812 26 1 -2.1768 -11.3347 4.2607 27 6 0.1701 -8.2560 0.7747 28 6 1.0043 -7.1966 0.5716 29 1 2.7069 2.0716 -0.3588 30 1 5.1472 0.1963 -0.8588 31 1 6.3123 2.3822 -1.4055 32 1 4.8207 3.3155 -0.8524 33 1 5.0448 2.3023 1.4628 34 1 6.5364 1.3688 0.9103 35 1 4.1406 -3.7556 -0.1047 36 1 3.9727 -3.4531 1.6412 37 1 3.9988 -6.1249 1.1234 38 1 3.4579 -7.9784 2.7866 39 1 1.9759 -9.8822 3.1752 40 1 1.6219 -12.5983 3.1437 41 1 -0.7480 -8.3379 0.2118 42 1 0.7458 -6.4386 -0.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786678798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -32.533783 kcal Electronic energy + Delta-G solvation = -26904.556979 eV Core-core repulsion = 22815.826680 eV Total energy + Delta-G solvation = -4088.730299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88325 -41.04176 -39.22469 -38.72294 -37.81053 -37.29608 -36.25536 -34.91654 -34.03270 -31.61480 -31.32302 -29.78398 -26.93299 -26.11981 -23.82621 -23.33650 -23.14323 -22.56632 -21.44889 -21.17716 -20.21886 -19.38323 -18.77387 -17.93496 -17.80253 -17.65186 -17.08123 -16.97417 -16.22606 -15.85995 -15.60906 -15.43885 -15.15205 -14.93763 -14.80629 -14.52648 -14.32144 -14.13472 -14.03075 -13.92790 -13.86330 -13.59389 -13.26092 -12.89489 -12.84042 -12.71008 -12.36664 -12.33020 -12.16427 -11.95740 -11.89580 -11.69654 -11.57998 -11.24224 -10.98462 -10.79223 -10.46930 -10.30025 -9.49734 -9.13070 -8.83890 -6.23724 -0.46248 0.78214 1.10191 1.13666 1.18920 1.33084 1.39824 1.51954 1.57882 1.72364 2.15990 2.29597 2.43786 2.55992 2.61748 3.06110 3.54500 3.62445 3.71144 3.75248 3.93945 4.04375 4.08788 4.13808 4.27202 4.38745 4.49232 4.55962 4.85904 4.89668 4.91946 5.05886 5.09555 5.14133 5.15497 5.25458 5.35963 5.40895 5.42790 5.60982 5.85701 6.00595 6.07383 6.30037 6.31474 6.52235 6.58659 6.68216 6.85053 6.96548 7.33017 8.07708 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.001816 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.096406 B =15413.087926 C =16091.542958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.274 3.726 3 C -0.128 4.128 4 C 0.110 3.890 5 C -0.173 4.173 6 C -0.154 4.154 7 C -0.148 4.148 8 C 0.518 3.482 9 O -0.490 6.490 10 O -0.355 6.355 11 C 0.064 3.936 12 C 0.494 3.506 13 O -0.566 6.566 14 N -0.630 5.630 15 C -0.024 4.024 16 C -0.091 4.091 17 C -0.206 4.206 18 C 0.079 3.921 19 C -0.499 4.499 20 H 0.074 0.926 21 C 0.058 3.942 22 N -0.777 5.777 23 Si 0.971 3.029 24 H -0.256 1.256 25 H -0.256 1.256 26 H -0.265 1.265 27 C -0.258 4.258 28 C -0.075 4.075 29 H 0.187 0.813 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.421 0.579 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.299 0.701 41 H 0.087 0.913 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.278 24.194 -2.605 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.041 4.041 3 C -0.133 4.133 4 C 0.088 3.912 5 C -0.191 4.191 6 C -0.190 4.190 7 C -0.185 4.185 8 C 0.363 3.637 9 O -0.379 6.379 10 O -0.271 6.271 11 C -0.012 4.012 12 C 0.281 3.719 13 O -0.445 6.445 14 N -0.277 5.277 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.226 4.226 18 C 0.077 3.923 19 C -0.525 4.525 20 H 0.093 0.907 21 C -0.165 4.165 22 N -0.399 5.399 23 Si 0.790 3.210 24 H -0.180 1.180 25 H -0.180 1.180 26 H -0.189 1.189 27 C -0.278 4.278 28 C -0.095 4.095 29 H 0.204 0.796 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.259 0.741 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.271 24.076 -2.606 27.615 hybrid contribution -0.034 -1.152 0.313 1.194 sum 13.237 22.925 -2.293 26.571 Atomic orbital electron populations 1.81301 1.13485 1.07760 1.10661 1.25576 0.92560 0.93269 0.92658 1.16506 0.83660 0.93508 1.19583 1.24328 0.95328 0.95644 0.75869 1.21685 0.89122 0.99944 1.08301 1.23295 1.02839 0.94666 0.98219 1.23049 1.00762 1.01555 0.93144 1.20908 0.85848 0.83100 0.73810 1.90852 1.13673 1.86326 1.47073 1.86653 1.41887 1.16870 1.81723 1.22763 0.91676 0.80044 1.06764 1.20808 0.88974 0.84683 0.77422 1.90739 1.17998 1.85537 1.50193 1.42536 1.10091 1.05579 1.69461 1.17020 0.96269 0.92842 1.05528 1.20432 0.99775 0.94333 0.96546 1.20803 0.97301 1.00126 1.04351 1.17918 0.92324 0.92436 0.89660 1.19761 1.01120 1.01675 1.29954 0.90740 1.26810 0.97191 0.96095 0.96417 1.69962 1.19630 1.19895 1.30418 0.85389 0.79156 0.78354 0.78100 1.18035 1.18015 1.18860 1.20598 1.02176 0.99628 1.05379 1.20443 0.94857 0.96150 0.98004 0.79572 0.85489 0.87245 0.86224 0.87365 0.87963 0.84783 0.84980 0.74132 0.85457 0.87311 0.88985 0.89448 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.83 18.54 19.00 0.35 -13.48 16 2 C 0.27 6.44 14.98 88.33 1.32 7.76 16 3 C -0.13 -2.07 5.82 -20.36 -0.12 -2.19 16 4 C 0.11 0.84 9.42 24.88 0.23 1.07 16 5 C -0.17 -1.29 4.37 -11.54 -0.05 -1.34 16 6 C -0.15 -0.42 10.24 30.62 0.31 -0.11 16 7 C -0.15 -0.83 10.24 30.62 0.31 -0.51 16 8 C 0.52 10.67 7.80 70.30 0.55 11.21 16 9 O -0.49 -9.36 13.19 19.89 0.26 -9.10 16 10 O -0.36 -9.68 9.31 -50.05 -0.47 -10.14 16 11 C 0.06 1.45 5.96 71.24 0.42 1.88 16 12 C 0.49 16.90 7.74 87.66 0.68 17.58 16 13 O -0.57 -26.11 13.97 15.76 0.22 -25.89 16 14 N -0.63 -20.82 5.30 -303.12 -1.61 -22.43 16 15 C -0.02 -1.06 6.29 38.56 0.24 -0.82 16 16 C -0.09 -4.08 9.90 22.13 0.22 -3.86 16 17 C -0.21 -10.72 8.85 22.48 0.20 -10.52 16 18 C 0.08 4.46 5.68 -21.28 -0.12 4.34 16 19 C -0.50 -27.48 8.93 23.39 0.21 -27.27 16 20 H 0.07 4.06 8.05 -2.91 -0.02 4.04 16 21 C 0.06 2.83 4.76 85.24 0.41 3.24 16 22 N -0.78 -38.46 11.47 21.82 0.25 -38.21 16 23 Si 0.97 36.98 29.68 68.60 2.04 39.02 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 C -0.26 -14.12 9.74 22.48 0.22 -13.90 16 28 C -0.07 -3.81 8.61 22.13 0.19 -3.62 16 29 H 0.19 0.06 8.06 -2.91 -0.02 0.03 16 30 H 0.13 1.44 6.31 -2.39 -0.02 1.42 16 31 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.42 9.69 8.82 -92.71 -0.82 8.87 16 38 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.11 5.69 5.99 -2.91 -0.02 5.68 16 40 H 0.30 12.92 8.30 -92.71 -0.77 12.15 16 41 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.10 5.09 6.28 -2.91 -0.02 5.07 16 Total: -1.00 -78.34 378.86 6.55 -71.79 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.27 Total: 25.52 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.23 Total: -17.07 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -1.00 Total: -74.12 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: 0.02 Total: -45.13 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.04 Total: 39.02 kcal Total: -78.34 6.55 -71.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786678798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds