Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38174 * 119.55215 * 2 1 4 4 C 1.39833 * 118.99553 * 180.27447 * 3 2 1 5 5 C 1.48053 * 120.93074 * 179.72785 * 4 3 2 6 6 O 1.21429 * 119.99544 * 359.71974 * 5 4 3 7 7 O 1.34669 * 120.00297 * 179.71812 * 5 4 3 8 8 C 1.45203 * 116.99679 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46828 * 179.97438 * 8 7 5 10 10 O 1.21273 * 119.99933 * 354.94064 * 9 8 7 11 11 N 1.34770 * 119.99836 * 174.93884 * 9 8 7 12 12 C 1.37148 * 120.00107 * 5.67577 * 11 9 8 13 13 H 1.07991 * 119.99849 * 55.66953 * 12 11 9 14 14 C 1.38888 * 119.99780 * 235.66680 * 12 11 9 15 15 N 1.31424 * 120.00225 * 9.25097 * 14 12 11 16 16 Si 1.86802 * 119.99865 * 189.24132 * 14 12 11 17 17 H 1.48493 * 109.46978 * 90.00546 * 16 14 12 18 18 H 1.48497 * 109.47326 * 210.00347 * 16 14 12 19 19 H 1.48495 * 109.47054 * 330.00534 * 16 14 12 20 20 C 1.39787 * 119.99883 * 185.67752 * 11 9 8 21 21 C 1.38962 * 120.07816 * 175.18488 * 20 11 9 22 22 C 1.38081 * 119.92443 * 179.97438 * 21 20 11 23 23 C 1.38311 * 120.07426 * 0.02562 * 22 21 20 24 24 C 1.38302 * 120.15721 * 359.97438 * 23 22 21 25 25 C 1.38085 * 120.08194 * 0.02562 * 24 23 22 26 26 C 1.39877 * 118.14701 * 359.45259 * 4 3 2 27 27 C 1.38122 * 118.99545 * 0.27394 * 26 4 3 28 28 N 1.31799 * 119.55054 * 179.71178 * 2 1 3 29 29 H 1.09000 * 109.46790 * 270.28204 * 1 2 3 30 30 H 1.09000 * 109.46921 * 30.28351 * 1 2 3 31 31 H 1.09000 * 109.47152 * 150.28634 * 1 2 3 32 32 H 1.08002 * 120.50372 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47328 * 60.00224 * 8 7 5 34 34 H 1.08999 * 109.47063 * 300.00079 * 8 7 5 35 35 H 0.97001 * 119.99727 * 184.98175 * 15 14 12 36 36 H 1.08007 * 120.03815 * 359.71180 * 21 20 11 37 37 H 1.08001 * 119.96327 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.92028 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.96312 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.04611 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.50348 * 180.25559 * 26 4 3 42 42 H 1.08000 * 119.54928 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5867 1.1884 -0.0059 5 6 4.3600 2.4509 -0.0121 6 8 3.7802 3.5179 -0.0174 7 8 5.7062 2.4161 -0.0120 8 6 6.3986 3.6924 -0.0177 9 6 7.8871 3.4563 -0.0161 10 8 8.3221 2.3285 0.0821 11 7 8.7348 4.4985 -0.1236 12 6 8.2489 5.7811 -0.1174 13 1 7.6364 6.1224 0.7039 14 6 8.5448 6.6408 -1.1673 15 7 9.1324 6.1797 -2.2486 16 14 8.1071 8.4525 -1.0426 17 1 9.2433 9.1959 -0.4412 18 1 7.8273 8.9887 -2.3988 19 1 6.9030 8.6132 -0.1885 20 6 10.1091 4.2723 -0.2416 21 6 10.9749 5.3386 -0.4529 22 6 12.3320 5.1116 -0.5684 23 6 12.8299 3.8246 -0.4746 24 6 11.9712 2.7610 -0.2643 25 6 10.6129 2.9807 -0.1478 26 6 4.2346 -0.0513 0.0003 27 6 3.4740 -1.2042 0.0061 28 7 2.1570 -1.1465 0.0058 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5094 32 1 1.6494 2.1378 0.0004 33 1 6.1203 4.2608 0.8697 34 1 6.1202 4.2527 -0.9102 35 1 9.4043 6.7910 -2.9510 36 1 10.5862 6.3433 -0.5309 37 1 13.0053 5.9398 -0.7330 38 1 13.8917 3.6499 -0.5657 39 1 12.3634 1.7574 -0.1911 40 1 9.9429 2.1496 0.0160 41 1 5.3132 -0.1061 0.0002 42 1 3.9650 -2.1661 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789026397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -29.419585 kcal Electronic energy + Delta-G solvation = -28292.373846 eV Core-core repulsion = 24203.778589 eV Total energy + Delta-G solvation = -4088.595257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89109 -40.02536 -39.45746 -37.35835 -36.16511 -35.15137 -33.44533 -32.65461 -32.11154 -29.87995 -29.63400 -27.90554 -27.60686 -25.36934 -24.83644 -23.01558 -21.93278 -21.29704 -20.66056 -19.68782 -18.11072 -18.01125 -16.93968 -16.44078 -16.37666 -15.88143 -15.78806 -15.62146 -15.30205 -14.90775 -14.76347 -14.39541 -14.25810 -13.70053 -13.51978 -13.13716 -12.98714 -12.92505 -12.60277 -12.56484 -12.44096 -12.29839 -11.90653 -11.82431 -11.59714 -11.34756 -11.20535 -10.92130 -10.75146 -10.54934 -10.44604 -10.13530 -10.12303 -9.79377 -9.37145 -9.20719 -8.86532 -8.29682 -7.87653 -7.01278 -6.44835 -4.71206 0.41545 0.84395 2.29886 2.46333 2.48559 2.52131 2.97627 3.06979 3.09184 3.54004 3.57323 3.85056 4.01533 4.18732 4.45229 4.61799 4.72065 4.76527 4.83143 5.01991 5.22966 5.28390 5.31968 5.42542 5.47513 5.60720 5.68786 5.77601 5.80586 5.82388 5.89842 5.96322 6.09547 6.37035 6.47905 6.61589 6.64661 6.79461 7.04415 7.12472 7.41961 7.52029 7.57709 7.64686 7.66553 7.73928 7.94102 8.30898 8.69647 9.04123 9.41626 10.33867 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.002930 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.487486 B = 9552.730603 C =11329.391185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.117 3.883 3 C -0.112 4.112 4 C -0.067 4.067 5 C 0.506 3.494 6 O -0.497 6.497 7 O -0.328 6.328 8 C 0.073 3.927 9 C 0.496 3.504 10 O -0.548 6.548 11 N -0.376 5.376 12 C -0.383 4.383 13 H 0.097 0.903 14 C 0.059 3.941 15 N -0.837 5.837 16 Si 0.916 3.084 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.183 3.817 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.170 4.170 24 C -0.120 4.120 25 C -0.190 4.190 26 C -0.120 4.120 27 C 0.097 3.903 28 N -0.467 5.467 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.277 0.723 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -7.116 3.083 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.020 4.020 3 C -0.132 4.132 4 C -0.076 4.076 5 C 0.349 3.651 6 O -0.385 6.385 7 O -0.243 6.243 8 C -0.003 4.003 9 C 0.286 3.714 10 O -0.431 6.431 11 N -0.084 5.084 12 C -0.509 4.509 13 H 0.114 0.886 14 C -0.152 4.152 15 N -0.468 5.468 16 Si 0.741 3.259 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.087 3.913 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.189 4.189 24 C -0.139 4.139 25 C -0.210 4.210 26 C -0.140 4.140 27 C -0.060 4.060 28 N -0.177 5.177 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.192 0.808 41 H 0.175 0.825 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.613 -8.011 2.894 12.844 hybrid contribution 0.637 2.185 -0.269 2.291 sum -8.976 -5.827 2.625 11.019 Atomic orbital electron populations 1.20721 0.88120 1.03777 1.03354 1.21265 0.97354 0.87579 0.95841 1.22129 0.92720 1.00473 0.97895 1.19529 0.93288 0.91748 1.03006 1.21009 0.81671 0.88932 0.73531 1.90843 1.71224 1.31407 1.45069 1.86493 1.18611 1.36225 1.82972 1.22667 0.90546 0.81615 1.05459 1.20173 0.87406 0.84596 0.79191 1.90219 1.76796 1.23715 1.52344 1.40765 1.02107 1.05850 1.59724 1.19431 1.37386 0.87246 1.06873 0.88577 1.25642 0.95096 1.00965 0.93485 1.70029 1.35023 1.36179 1.05543 0.86083 0.79772 0.81765 0.78302 1.19559 1.20380 1.18701 1.18231 0.83600 0.93248 0.96264 1.21030 0.91660 0.99744 0.99920 1.20781 0.94992 0.96183 1.02272 1.20821 0.98370 0.93426 1.06321 1.20876 0.93673 0.97687 1.01648 1.22786 0.96316 0.98356 1.03518 1.22662 1.03108 0.91878 0.96380 1.22820 0.88914 0.98687 0.95612 1.67388 1.10494 1.29467 1.10388 0.90171 0.90404 0.90205 0.83289 0.88471 0.87448 0.91221 0.85006 0.87644 0.88048 0.87570 0.80832 0.82524 0.81656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.00 0.37 -0.38 16 2 C 0.12 1.25 6.78 -82.63 -0.56 0.69 16 3 C -0.11 -1.32 9.31 -39.01 -0.36 -1.68 16 4 C -0.07 -0.91 5.91 -104.66 -0.62 -1.52 16 5 C 0.51 8.38 7.92 34.76 0.28 8.65 16 6 O -0.50 -9.06 16.23 -19.21 -0.31 -9.38 16 7 O -0.33 -6.04 9.12 -47.07 -0.43 -6.47 16 8 C 0.07 1.45 4.78 36.01 0.17 1.62 16 9 C 0.50 11.45 7.65 -10.98 -0.08 11.36 16 10 O -0.55 -13.18 12.90 -14.04 -0.18 -13.36 16 11 N -0.38 -9.13 2.62 -58.98 -0.15 -9.29 16 12 C -0.38 -9.06 7.61 -14.93 -0.11 -9.17 16 13 H 0.10 2.15 7.85 -52.49 -0.41 1.74 16 14 C 0.06 1.38 3.49 -17.49 -0.06 1.32 16 15 N -0.84 -20.98 11.39 55.49 0.63 -20.34 16 16 Si 0.92 18.12 29.57 -169.99 -5.03 13.09 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 20 C 0.18 4.47 6.05 -83.69 -0.51 3.96 16 21 C -0.10 -2.40 7.87 -39.37 -0.31 -2.71 16 22 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 16 23 C -0.17 -3.28 10.04 -39.53 -0.40 -3.68 16 24 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 25 C -0.19 -4.39 9.06 -39.37 -0.36 -4.75 16 26 C -0.12 -1.44 9.71 -39.01 -0.38 -1.82 16 27 C 0.10 1.02 11.17 -17.60 -0.20 0.82 16 28 N -0.47 -5.38 10.25 -9.52 -0.10 -5.48 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.15 1.59 7.74 -52.49 -0.41 1.18 16 33 H 0.10 1.79 8.13 -51.93 -0.42 1.37 16 34 H 0.11 2.18 8.04 -51.93 -0.42 1.76 16 35 H 0.28 6.57 8.32 -40.82 -0.34 6.23 16 36 H 0.13 3.17 5.15 -52.48 -0.27 2.90 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.18 4.14 4.50 -56.37 -0.25 3.89 16 41 H 0.16 1.83 7.71 -52.49 -0.40 1.42 16 42 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -29.21 365.03 -8.67 -37.89 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.68 Total: 10.85 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.93 Total: -3.02 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.38 Total: -35.11 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.92 Total: -29.21 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.21 -8.67 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789026397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.467 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds