Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38174 * 119.55215 * 2 1 4 4 C 1.39833 * 118.99553 * 180.27447 * 3 2 1 5 5 C 1.48053 * 120.93074 * 179.72785 * 4 3 2 6 6 O 1.21429 * 119.99544 * 359.71974 * 5 4 3 7 7 O 1.34669 * 120.00297 * 179.71812 * 5 4 3 8 8 C 1.45203 * 116.99679 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46828 * 179.97438 * 8 7 5 10 10 O 1.21273 * 119.99933 * 354.94064 * 9 8 7 11 11 N 1.34770 * 119.99836 * 174.93884 * 9 8 7 12 12 C 1.37148 * 120.00107 * 5.67577 * 11 9 8 13 13 H 1.07991 * 119.99849 * 55.66953 * 12 11 9 14 14 C 1.38888 * 119.99780 * 235.66680 * 12 11 9 15 15 N 1.31424 * 120.00225 * 9.25097 * 14 12 11 16 16 Si 1.86802 * 119.99865 * 189.24132 * 14 12 11 17 17 H 1.48493 * 109.46978 * 90.00546 * 16 14 12 18 18 H 1.48497 * 109.47326 * 210.00347 * 16 14 12 19 19 H 1.48495 * 109.47054 * 330.00534 * 16 14 12 20 20 C 1.39787 * 119.99883 * 185.67752 * 11 9 8 21 21 C 1.38962 * 120.07816 * 175.18488 * 20 11 9 22 22 C 1.38081 * 119.92443 * 179.97438 * 21 20 11 23 23 C 1.38311 * 120.07426 * 0.02562 * 22 21 20 24 24 C 1.38302 * 120.15721 * 359.97438 * 23 22 21 25 25 C 1.38085 * 120.08194 * 0.02562 * 24 23 22 26 26 C 1.39877 * 118.14701 * 359.45259 * 4 3 2 27 27 C 1.38122 * 118.99545 * 0.27394 * 26 4 3 28 28 N 1.31799 * 119.55054 * 179.71178 * 2 1 3 29 29 H 1.09000 * 109.46790 * 270.28204 * 1 2 3 30 30 H 1.09000 * 109.46921 * 30.28351 * 1 2 3 31 31 H 1.09000 * 109.47152 * 150.28634 * 1 2 3 32 32 H 1.08002 * 120.50372 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47328 * 60.00224 * 8 7 5 34 34 H 1.08999 * 109.47063 * 300.00079 * 8 7 5 35 35 H 0.97001 * 119.99727 * 184.98175 * 15 14 12 36 36 H 1.08007 * 120.03815 * 359.71180 * 21 20 11 37 37 H 1.08001 * 119.96327 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.92028 * 179.97438 * 23 22 21 39 39 H 1.08006 * 119.96312 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.04611 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.50348 * 180.25559 * 26 4 3 42 42 H 1.08000 * 119.54928 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5867 1.1884 -0.0059 5 6 4.3600 2.4509 -0.0121 6 8 3.7802 3.5179 -0.0174 7 8 5.7062 2.4161 -0.0120 8 6 6.3986 3.6924 -0.0177 9 6 7.8871 3.4563 -0.0161 10 8 8.3221 2.3285 0.0821 11 7 8.7348 4.4985 -0.1236 12 6 8.2489 5.7811 -0.1174 13 1 7.6364 6.1224 0.7039 14 6 8.5448 6.6408 -1.1673 15 7 9.1324 6.1797 -2.2486 16 14 8.1071 8.4525 -1.0426 17 1 9.2433 9.1959 -0.4412 18 1 7.8273 8.9887 -2.3988 19 1 6.9030 8.6132 -0.1885 20 6 10.1091 4.2723 -0.2416 21 6 10.9749 5.3386 -0.4529 22 6 12.3320 5.1116 -0.5684 23 6 12.8299 3.8246 -0.4746 24 6 11.9712 2.7610 -0.2643 25 6 10.6129 2.9807 -0.1478 26 6 4.2346 -0.0513 0.0003 27 6 3.4740 -1.2042 0.0061 28 7 2.1570 -1.1465 0.0058 29 1 -0.3633 0.0051 1.0277 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5094 32 1 1.6494 2.1378 0.0004 33 1 6.1203 4.2608 0.8697 34 1 6.1202 4.2527 -0.9102 35 1 9.4043 6.7910 -2.9510 36 1 10.5862 6.3433 -0.5309 37 1 13.0053 5.9398 -0.7330 38 1 13.8917 3.6499 -0.5657 39 1 12.3634 1.7574 -0.1911 40 1 9.9429 2.1496 0.0160 41 1 5.3132 -0.1061 0.0002 42 1 3.9650 -2.1661 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789026397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -43.263462 kcal Electronic energy + Delta-G solvation = -28292.974161 eV Core-core repulsion = 24203.778589 eV Total energy + Delta-G solvation = -4089.195573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.12378 -41.53869 -40.76144 -39.01644 -37.63824 -36.91971 -34.35005 -33.92472 -33.53898 -31.53026 -31.29365 -29.20817 -28.63115 -27.14637 -26.02585 -23.91892 -23.55902 -22.94394 -21.90771 -21.44685 -19.78402 -19.25767 -18.22834 -17.94817 -17.86814 -17.35996 -17.05499 -16.94053 -16.71879 -16.29567 -16.09272 -15.72856 -15.45619 -15.17208 -14.79923 -14.63782 -14.40533 -14.38293 -14.07038 -13.86368 -13.57739 -13.33593 -13.28477 -13.09852 -13.06359 -12.85784 -12.76365 -12.51046 -12.14170 -12.09845 -11.98802 -11.75904 -11.13303 -11.12218 -10.70863 -10.61952 -10.06435 -10.04641 -9.55474 -8.78967 -8.21976 -6.56274 -0.63355 -0.01952 0.60659 0.79478 1.07189 1.29875 1.39753 1.43884 1.54385 1.82294 2.20233 2.64425 2.65409 2.84350 3.26008 3.30662 3.36890 3.64312 3.76425 3.81752 3.93352 4.04402 4.15776 4.31646 4.35969 4.41851 4.50148 4.58803 4.64621 4.80538 4.90169 4.91244 4.95395 4.98116 5.09025 5.10171 5.18066 5.29454 5.39651 5.54958 5.76408 5.84268 5.85929 5.97116 6.17108 6.36193 6.56784 6.80171 6.88769 7.25515 7.62339 8.56021 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.002930 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.487486 B = 9552.730603 C =11329.391185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.115 4.115 4 C -0.086 4.086 5 C 0.507 3.493 6 O -0.518 6.518 7 O -0.336 6.336 8 C 0.085 3.915 9 C 0.483 3.517 10 O -0.566 6.566 11 N -0.387 5.387 12 C -0.395 4.395 13 H 0.103 0.897 14 C 0.027 3.973 15 N -0.871 5.871 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.256 1.256 20 C 0.149 3.851 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.161 4.161 24 C -0.119 4.119 25 C -0.214 4.214 26 C -0.126 4.126 27 C 0.103 3.897 28 N -0.477 5.477 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.278 0.722 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -7.500 3.315 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.019 4.019 3 C -0.135 4.135 4 C -0.095 4.095 5 C 0.351 3.649 6 O -0.408 6.408 7 O -0.251 6.251 8 C 0.009 3.991 9 C 0.274 3.726 10 O -0.450 6.450 11 N -0.096 5.096 12 C -0.521 4.521 13 H 0.120 0.880 14 C -0.181 4.181 15 N -0.503 5.503 16 Si 0.801 3.199 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.179 1.179 20 C 0.054 3.946 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.137 4.137 25 C -0.233 4.233 26 C -0.146 4.146 27 C -0.053 4.053 28 N -0.188 5.188 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.179 0.821 41 H 0.172 0.828 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.618 -8.405 3.140 13.153 hybrid contribution 0.673 2.196 -0.333 2.321 sum -8.945 -6.209 2.807 11.245 Atomic orbital electron populations 1.20842 0.85550 1.04870 1.04564 1.21801 0.98979 0.86817 0.94280 1.22289 0.91875 1.01479 0.97812 1.19524 0.93927 0.90752 1.05298 1.21574 0.80854 0.89956 0.72481 1.90817 1.71225 1.32454 1.46273 1.86503 1.19875 1.35354 1.83380 1.22400 0.88909 0.82336 1.05482 1.20653 0.88610 0.84353 0.78939 1.90197 1.77420 1.24197 1.53204 1.40983 1.02568 1.06248 1.59780 1.19733 1.37637 0.87442 1.07323 0.87974 1.26357 0.94457 1.04502 0.92753 1.70132 1.36323 1.37496 1.06339 0.85135 0.79775 0.76921 0.78067 1.18911 1.20604 1.17943 1.18604 0.83977 0.94262 0.97804 1.21072 0.93037 0.98859 1.01427 1.21168 0.94191 0.97962 1.00933 1.21261 1.00332 0.92351 1.03986 1.21257 0.92534 0.99756 1.00163 1.22815 0.97827 0.97587 1.05074 1.22714 1.03189 0.91896 0.96812 1.23285 0.88683 0.99336 0.94009 1.67518 1.10849 1.29784 1.10618 0.88755 0.88843 0.89597 0.82500 0.87332 0.88306 0.91244 0.86413 0.84779 0.83851 0.84445 0.82136 0.82772 0.78588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.16 71.24 0.72 -0.51 16 2 C 0.12 2.35 6.78 42.55 0.29 2.64 16 3 C -0.11 -2.61 9.31 22.64 0.21 -2.40 16 4 C -0.09 -2.36 5.91 -19.89 -0.12 -2.48 16 5 C 0.51 17.30 7.92 70.43 0.56 17.86 16 6 O -0.52 -19.37 16.23 20.07 0.33 -19.04 16 7 O -0.34 -12.88 9.12 -49.41 -0.45 -13.33 16 8 C 0.08 3.52 4.78 71.24 0.34 3.86 16 9 C 0.48 23.32 7.65 87.66 0.67 23.99 16 10 O -0.57 -28.47 12.90 15.74 0.20 -28.27 16 11 N -0.39 -19.52 2.62 -458.91 -1.20 -20.72 16 12 C -0.39 -19.22 7.61 84.02 0.64 -18.58 16 13 H 0.10 4.68 7.85 -2.92 -0.02 4.66 16 14 C 0.03 1.28 3.49 84.91 0.30 1.58 16 15 N -0.87 -44.68 11.39 21.65 0.25 -44.43 16 16 Si 0.98 37.33 29.57 68.60 2.03 39.36 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 20 C 0.15 7.49 6.05 38.22 0.23 7.72 16 21 C -0.12 -5.79 7.87 22.41 0.18 -5.62 16 22 C -0.12 -4.86 10.04 22.25 0.22 -4.64 16 23 C -0.16 -5.73 10.04 22.30 0.22 -5.50 16 24 C -0.12 -4.60 10.04 22.25 0.22 -4.38 16 25 C -0.21 -10.02 9.06 22.41 0.20 -9.82 16 26 C -0.13 -3.00 9.71 22.64 0.22 -2.78 16 27 C 0.10 2.03 11.17 84.67 0.95 2.98 16 28 N -0.48 -10.17 10.25 -184.05 -1.89 -12.05 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.16 3.24 7.74 -2.91 -0.02 3.22 16 33 H 0.11 4.16 8.13 -2.39 -0.02 4.14 16 34 H 0.10 4.23 8.04 -2.39 -0.02 4.21 16 35 H 0.28 13.43 8.32 -92.71 -0.77 12.66 16 36 H 0.12 5.78 5.15 -2.91 -0.01 5.76 16 37 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.16 7.95 4.50 -64.48 -0.29 7.66 16 41 H 0.15 3.69 7.71 -2.91 -0.02 3.66 16 42 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -64.64 365.03 6.11 -58.53 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.79 Total: 36.03 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 6.06 Total: 3.92 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.84 Total: -77.20 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: 0.08 Total: -60.64 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -64.64 6.11 -58.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789026397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.266 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds