Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48506 * 109.46827 * 269.99768 * 3 2 1 5 5 H 1.48492 * 109.47195 * 30.00104 * 3 2 1 6 6 H 1.48504 * 109.47099 * 150.00323 * 3 2 1 7 7 C 1.39949 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00004 * 169.32004 * 7 2 1 9 9 C 1.41394 * 119.99802 * 349.31194 * 7 2 1 10 10 C 1.40735 * 120.24585 * 330.83744 * 9 7 2 11 11 C 1.37604 * 119.74208 * 180.31597 * 10 9 7 12 12 C 1.38653 * 120.24553 * 359.66344 * 11 10 9 13 13 C 1.38607 * 120.50665 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24836 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.12799 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46937 * 265.00157 * 15 14 13 17 17 O 1.20819 * 120.00397 * 0.02562 * 16 15 14 18 18 O 1.34234 * 119.99690 * 180.02562 * 16 15 14 19 19 C 1.45201 * 116.99715 * 180.02562 * 18 16 15 20 20 C 1.50704 * 109.47116 * 179.97438 * 19 18 16 21 21 N 1.31685 * 119.71647 * 263.17263 * 20 19 18 22 22 C 1.31929 * 121.88021 * 179.72185 * 21 20 19 23 23 C 1.38356 * 121.07701 * 0.59216 * 22 21 20 24 24 C 1.38353 * 119.30215 * 359.42368 * 23 22 21 25 25 C 1.39516 * 119.71410 * 83.19252 * 20 19 18 26 26 C 1.47845 * 120.56529 * 359.95501 * 25 20 19 27 27 N 1.34777 * 120.00428 * 173.81022 * 26 25 20 28 28 O 1.21550 * 119.99643 * 353.81660 * 26 25 20 29 29 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 30 30 H 1.07991 * 120.12876 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.87377 * 179.68313 * 11 10 9 32 32 H 1.08006 * 119.74460 * 180.02562 * 12 11 10 33 33 H 1.08006 * 119.87804 * 179.97438 * 13 12 11 34 34 H 1.08999 * 109.47299 * 145.00134 * 15 14 13 35 35 H 1.08996 * 109.47177 * 24.99890 * 15 14 13 36 36 H 1.08996 * 109.47864 * 59.99476 * 19 18 16 37 37 H 1.09002 * 109.46645 * 299.99370 * 19 18 16 38 38 H 1.08001 * 119.46478 * 180.31211 * 22 21 20 39 39 H 1.08000 * 120.35009 * 179.70013 * 23 22 21 40 40 H 1.08005 * 120.85789 * 180.30172 * 24 23 22 41 41 H 0.96996 * 119.99567 * 0.02562 * 27 26 25 42 42 H 0.97000 * 119.99741 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4397 2.6526 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0740 -1.2200 -0.1739 9 6 1.3195 -2.4260 0.2260 10 6 0.1579 -2.4445 1.0205 11 6 -0.5004 -3.6328 1.2395 12 6 -0.0273 -4.8077 0.6752 13 6 1.1120 -4.8001 -0.1142 14 6 1.7872 -3.6233 -0.3460 15 6 3.0259 -3.6183 -1.2042 16 6 4.2459 -3.7252 -0.3259 17 8 4.1222 -3.7984 0.8737 18 8 5.4700 -3.7391 -0.8765 19 6 6.5993 -3.8447 0.0300 20 6 7.8812 -3.8457 -0.7624 21 7 8.4612 -4.9888 -1.0642 22 6 9.5808 -5.0396 -1.7603 23 6 10.2042 -3.8838 -2.1956 24 6 9.6351 -2.6567 -1.9047 25 6 8.4435 -2.6355 -1.1696 26 6 7.7920 -1.3522 -0.8311 27 7 8.4061 -0.1878 -1.1200 28 8 6.7025 -1.3473 -0.2922 29 1 -0.4850 0.8400 0.0004 30 1 -0.2126 -1.5305 1.4603 31 1 -1.3890 -3.6504 1.8530 32 1 -0.5506 -5.7358 0.8521 33 1 1.4718 -5.7213 -0.5484 34 1 3.0690 -2.6905 -1.7746 35 1 2.9964 -4.4653 -1.8897 36 1 6.5234 -4.7714 0.5987 37 1 6.5958 -2.9967 0.7149 38 1 10.0203 -5.9990 -1.9901 39 1 11.1230 -3.9389 -2.7605 40 1 10.0978 -1.7389 -2.2363 41 1 9.2754 -0.1917 -1.5502 42 1 7.9787 0.6541 -0.8975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793255302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -86.907501 kcal Electronic energy + Delta-G solvation = -28870.395781 eV Core-core repulsion = 24779.307661 eV Total energy + Delta-G solvation = -4091.088120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.01918 -41.21654 -39.88515 -39.41939 -37.39852 -35.51711 -35.24562 -33.74289 -33.39584 -33.03821 -31.38456 -29.33521 -28.01991 -26.88965 -25.73182 -23.58284 -22.86785 -22.64560 -22.09634 -21.09810 -19.19152 -19.09627 -18.62197 -18.33064 -17.89594 -17.53181 -17.11994 -16.86964 -16.43928 -16.27457 -16.03110 -15.84069 -15.50400 -15.45449 -14.75015 -14.67894 -14.45403 -14.36125 -13.89624 -13.70200 -13.61394 -13.38203 -13.15932 -12.90087 -12.83280 -12.77954 -12.54382 -12.14288 -11.87685 -11.46421 -11.38002 -11.28205 -11.12575 -11.08490 -11.02147 -10.76688 -10.55752 -10.21487 -9.25251 -9.20772 -8.59499 -6.35980 -0.52740 0.03292 0.90575 1.07593 1.30676 1.38779 1.44500 1.49327 1.74795 1.93179 2.20109 2.35796 2.75313 2.80294 3.09587 3.48285 3.70253 3.73641 3.76668 4.01444 4.03711 4.20687 4.29399 4.33445 4.42067 4.46716 4.53969 4.58417 4.68195 4.71771 4.90510 4.98088 5.00051 5.17231 5.33616 5.45638 5.49872 5.52556 5.74323 5.79273 5.99224 6.13503 6.17140 6.33266 6.38649 6.69767 6.79244 6.92494 6.96096 7.05309 7.23669 8.36432 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.003766 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.929646 B = 7432.649092 C = 9411.991055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.037 3.963 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.485 4.485 8 H 0.059 0.941 9 C 0.098 3.902 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.235 4.235 13 C -0.088 4.088 14 C -0.198 4.198 15 C -0.038 4.038 16 C 0.470 3.530 17 O -0.533 6.533 18 O -0.348 6.348 19 C 0.113 3.887 20 C 0.155 3.845 21 N -0.503 5.503 22 C 0.117 3.883 23 C -0.150 4.150 24 C -0.034 4.034 25 C -0.183 4.183 26 C 0.550 3.450 27 N -0.824 5.824 28 O -0.570 6.570 29 H 0.287 0.713 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.199 0.801 39 H 0.196 0.804 40 H 0.187 0.813 41 H 0.419 0.581 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.721 -1.940 -9.192 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.199 1.199 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.096 3.904 10 C -0.204 4.204 11 C -0.131 4.131 12 C -0.254 4.254 13 C -0.106 4.106 14 C -0.199 4.199 15 C -0.075 4.075 16 C 0.315 3.685 17 O -0.422 6.422 18 O -0.264 6.264 19 C 0.039 3.961 20 C 0.018 3.982 21 N -0.213 5.213 22 C -0.040 4.040 23 C -0.169 4.169 24 C -0.060 4.060 25 C -0.188 4.188 26 C 0.336 3.664 27 N -0.390 5.390 28 O -0.450 6.450 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.215 0.785 39 H 0.213 0.787 40 H 0.204 0.796 41 H 0.252 0.748 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 23.441 -2.734 -8.220 24.990 hybrid contribution 0.441 1.872 0.283 1.944 sum 23.882 -0.862 -7.937 25.181 Atomic orbital electron populations 1.69844 1.08421 1.30150 1.37055 1.26593 0.95564 1.03919 0.91566 0.85377 0.78726 0.76879 0.79793 1.17895 1.18425 1.19931 1.19584 0.95103 0.91789 1.45068 0.92251 1.17730 0.91793 0.92501 0.88420 1.21347 0.99524 0.97019 1.02554 1.21017 0.99124 0.93230 0.99778 1.20769 1.00554 0.97520 1.06516 1.20773 0.95541 0.96168 0.98097 1.19495 0.99359 0.94720 1.06361 1.19978 0.85890 1.05440 0.96227 1.24355 0.84440 0.71046 0.88687 1.90590 1.87087 1.46337 1.18148 1.86436 1.14861 1.83921 1.41224 1.21652 0.80963 1.02480 0.91051 1.20573 0.93902 0.88863 0.94899 1.67472 1.12108 1.28111 1.13624 1.23793 0.88718 1.01745 0.89757 1.22727 1.02663 0.91400 1.00117 1.22273 0.90587 1.01732 0.91377 1.20764 0.99767 0.93263 1.05046 1.18442 0.84484 0.85489 0.78025 1.43481 1.24661 1.07200 1.63647 1.90947 1.22476 1.87738 1.43832 0.90268 0.88090 0.87041 0.86011 0.86167 0.88165 0.85811 0.91441 0.89655 0.78454 0.78666 0.79558 0.74771 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.90 10.87 21.83 0.24 -45.67 16 2 C 0.04 2.05 5.25 85.26 0.45 2.50 16 3 Si 0.97 42.45 29.57 68.60 2.03 44.48 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.49 -28.69 8.07 23.46 0.19 -28.50 16 8 H 0.06 3.61 6.77 -2.91 -0.02 3.59 16 9 C 0.10 5.73 5.55 -21.29 -0.12 5.61 16 10 C -0.18 -10.64 8.66 22.73 0.20 -10.45 16 11 C -0.11 -5.71 10.02 22.22 0.22 -5.49 16 12 C -0.23 -10.96 10.05 22.46 0.23 -10.73 16 13 C -0.09 -4.16 9.66 22.22 0.21 -3.94 16 14 C -0.20 -10.33 4.43 -19.41 -0.09 -10.41 16 15 C -0.04 -1.74 5.30 29.10 0.15 -1.58 16 16 C 0.47 22.65 7.55 71.24 0.54 23.19 16 17 O -0.53 -29.43 15.78 21.98 0.35 -29.08 16 18 O -0.35 -14.97 9.65 -46.35 -0.45 -15.42 16 19 C 0.11 4.37 4.70 71.24 0.33 4.70 16 20 C 0.16 4.61 6.46 42.89 0.28 4.89 16 21 N -0.50 -12.73 10.26 -182.84 -1.88 -14.61 16 22 C 0.12 1.61 11.17 84.71 0.95 2.56 16 23 C -0.15 -1.11 10.10 22.33 0.23 -0.89 16 24 C -0.03 -0.36 9.63 22.73 0.22 -0.14 16 25 C -0.18 -4.18 5.89 -19.99 -0.12 -4.30 16 26 C 0.55 14.84 7.98 86.79 0.69 15.53 16 27 N -0.82 -12.35 8.83 -175.61 -1.55 -13.90 16 28 O -0.57 -23.02 13.78 10.05 0.14 -22.88 16 29 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 30 H 0.10 6.04 6.25 -2.92 -0.02 6.02 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 32 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.10 4.67 7.14 -2.39 -0.02 4.65 16 35 H 0.12 4.56 8.05 -2.39 -0.02 4.54 16 36 H 0.07 2.61 8.13 -2.39 -0.02 2.60 16 37 H 0.09 3.69 5.87 -2.39 -0.01 3.67 16 38 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.19 0.12 6.57 -2.91 -0.02 0.10 16 41 H 0.42 2.10 6.98 -92.71 -0.65 1.45 16 42 H 0.41 6.11 8.93 -92.71 -0.83 5.28 16 Total: -1.00 -88.34 363.80 3.07 -85.27 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.37 Total: 29.26 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.56 Total: -17.46 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -3.19 Total: -74.17 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: 0.04 Total: -67.38 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -88.34 3.07 -85.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793255302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.640 kcal (2) G-P(sol) polarization free energy of solvation -88.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds