Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 C 1.50693 * 109.47438 * 180.02562 * 3 2 1 5 5 N 1.35052 * 126.38014 * 264.98190 * 4 3 2 6 6 H 0.97000 * 124.87975 * 359.97438 * 5 4 3 7 7 N 1.28466 * 110.23893 * 179.97438 * 5 4 3 8 8 C 1.31852 * 110.06711 * 359.97438 * 7 5 4 9 9 C 1.47586 * 126.52638 * 179.97438 * 8 7 5 10 10 O 1.21493 * 120.00179 * 180.02562 * 9 8 7 11 11 O 1.34732 * 119.99737 * 359.74272 * 9 8 7 12 12 C 1.45202 * 116.99693 * 180.27280 * 11 9 8 13 13 C 1.50701 * 109.46859 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00011 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00119 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46977 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00615 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00005 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99809 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00244 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99917 * 21 19 17 23 23 H 1.48503 * 109.46986 * 210.00287 * 21 19 17 24 24 H 1.48508 * 109.46837 * 329.99792 * 21 19 17 25 25 C 1.35348 * 126.38217 * 85.26947 * 4 3 2 26 26 N 1.48019 * 127.24498 * 0.02888 * 25 4 3 27 27 O 1.21799 * 120.00194 * 270.15117 * 26 25 4 28 28 O 1.21801 * 120.00074 * 90.15363 * 26 25 4 29 29 H 1.09005 * 109.47150 * 299.99462 * 1 2 3 30 30 H 1.08993 * 109.47838 * 59.99884 * 1 2 3 31 31 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46665 * 240.00526 * 2 1 3 33 33 H 1.08997 * 109.47222 * 119.99773 * 2 1 3 34 34 H 1.09000 * 109.47236 * 59.99782 * 3 2 1 35 35 H 1.09006 * 109.47096 * 300.00570 * 3 2 1 36 36 H 1.08998 * 109.47630 * 300.00508 * 12 11 9 37 37 H 1.09004 * 109.46770 * 60.00912 * 12 11 9 38 38 H 0.97009 * 119.99606 * 0.02562 * 15 13 12 39 39 H 1.09006 * 109.46984 * 300.00038 * 16 15 13 40 40 H 1.08996 * 109.47033 * 60.00213 * 16 15 13 41 41 H 0.96997 * 119.99451 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3484 1.5376 1.0822 6 1 4.0371 1.6181 1.9973 7 7 5.5823 1.5059 0.7259 8 6 5.6720 1.3901 -0.5844 9 6 6.9150 1.3205 -1.3771 10 8 6.8594 1.2141 -2.5860 11 8 8.1114 1.3806 -0.7604 12 6 9.2916 1.3123 -1.6034 13 6 10.5275 1.3933 -0.7448 14 8 10.4238 1.4977 0.4589 15 7 11.7481 1.3496 -1.3148 16 6 12.9495 1.4277 -0.4802 17 6 14.1744 1.3582 -1.3552 18 1 14.0687 1.2647 -2.4260 19 6 15.4303 1.4129 -0.7888 20 7 15.5592 1.5263 0.5152 21 14 16.9487 1.3275 -1.8734 22 1 17.3442 2.6998 -2.2804 23 1 18.0607 0.6949 -1.1194 24 1 16.6482 0.5197 -3.0829 25 6 4.3493 1.3529 -1.0869 26 7 3.9314 1.2366 -2.5021 27 8 3.7565 0.1375 -2.9971 28 8 3.7626 2.2399 -3.1717 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 9.2921 0.3707 -2.1524 37 1 9.2833 2.1438 -2.3081 38 1 11.8310 1.2664 -2.2777 39 1 12.9492 2.3689 0.0699 40 1 12.9576 0.5955 0.2237 41 1 16.4427 1.5644 0.9136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796260060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -54.751554 kcal Electronic energy + Delta-G solvation = -28471.965691 eV Core-core repulsion = 23971.422694 eV Total energy + Delta-G solvation = -4500.542997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.10410 -42.07047 -40.64861 -38.77534 -36.72598 -36.64326 -36.32563 -34.28652 -33.35988 -32.44099 -32.27460 -29.45729 -28.18033 -26.92937 -26.45566 -25.23230 -22.79539 -22.58104 -21.93099 -21.11243 -20.00962 -19.47662 -19.04015 -18.39127 -17.96416 -17.54479 -17.20744 -17.12407 -16.56475 -16.37877 -15.83570 -15.56964 -15.14071 -14.78922 -14.70239 -14.32192 -14.03667 -13.24025 -13.16946 -13.13687 -12.65448 -12.51762 -12.13833 -12.08925 -12.01927 -11.91970 -11.83583 -11.54812 -11.46252 -11.31934 -11.30132 -11.02471 -10.96331 -10.85606 -10.70367 -10.35746 -10.27262 -9.45863 -9.24349 -8.80029 -8.02215 -6.21000 -4.28497 0.24255 0.44137 0.56272 0.79593 1.67538 2.11569 2.35571 3.11994 3.22812 3.28675 3.30790 3.33736 3.41637 3.66071 3.91220 4.11233 4.23847 4.27564 4.33576 4.56792 4.70031 4.76719 4.82818 5.01070 5.01968 5.12781 5.15952 5.27274 5.32809 5.40237 5.56646 5.76789 5.91677 5.99141 6.61189 7.17387 7.23042 7.31218 7.33623 7.43369 7.59138 7.89978 8.45999 8.68277 8.92407 9.37927 10.89100 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.001866 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.538362 B =15002.220839 C =15689.924388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.069 4.069 4 C 0.100 3.900 5 N -0.355 5.355 6 H 0.465 0.535 7 N -0.184 5.184 8 C 0.062 3.938 9 C 0.548 3.452 10 O -0.484 6.484 11 O -0.304 6.304 12 C 0.047 3.953 13 C 0.501 3.499 14 O -0.531 6.531 15 N -0.705 5.705 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.100 4.100 26 N 0.055 4.945 27 O -0.120 6.120 28 O -0.123 6.123 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.394 0.606 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.849 -0.928 0.173 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.108 4.108 4 C -0.029 4.029 5 N -0.072 5.072 6 H 0.314 0.686 7 N -0.020 5.020 8 C -0.100 4.100 9 C 0.388 3.612 10 O -0.369 6.369 11 O -0.217 6.217 12 C -0.030 4.030 13 C 0.283 3.717 14 O -0.408 6.408 15 N -0.355 5.355 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.192 4.192 26 N 0.590 4.410 27 O -0.345 6.345 28 O -0.347 6.347 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.227 0.773 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.784 -0.719 2.538 30.897 hybrid contribution 0.414 -0.079 -1.560 1.616 sum -30.371 -0.799 0.978 30.397 Atomic orbital electron populations 1.21752 0.94051 1.02772 1.02325 1.21616 0.97231 0.93778 1.03796 1.20660 0.83731 1.00338 1.06045 1.20997 0.95858 1.00820 0.85220 1.43363 1.02507 1.51027 1.10264 0.68602 1.74178 1.00425 1.15036 1.12318 1.20434 0.90298 1.09560 0.89669 1.19284 0.82986 0.73903 0.85069 1.90974 1.87532 1.44825 1.13562 1.86668 1.13049 1.82230 1.39791 1.23076 0.81907 1.05156 0.92890 1.19772 0.84224 0.79059 0.88624 1.90725 1.86544 1.49190 1.14374 1.46359 1.05768 1.71876 1.11492 1.19194 0.79084 0.98014 0.90598 1.21211 0.90433 1.53126 0.93651 0.91703 1.24956 0.99261 0.94576 0.95187 1.69976 1.24089 1.48357 1.09766 0.86378 0.81840 0.78335 0.80145 1.20412 1.20977 1.19692 1.20384 0.93128 1.21572 0.84146 1.42110 0.97915 1.00593 1.00428 1.94583 1.52668 1.14268 1.73027 1.94590 1.53008 1.27977 1.59173 0.92310 0.92115 0.91710 0.90557 0.91066 0.88177 0.88145 0.87865 0.87862 0.77324 0.95203 0.95192 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.04 16 2 C -0.13 -0.46 5.92 -26.73 -0.16 -0.62 16 3 C -0.07 -0.24 5.77 -27.89 -0.16 -0.40 16 4 C 0.10 0.68 6.48 -82.21 -0.53 0.15 16 5 N -0.35 -2.13 6.83 33.50 0.23 -1.91 16 6 H 0.47 0.63 8.96 -190.44 -1.71 -1.07 16 7 N -0.18 -2.02 12.24 33.41 0.41 -1.61 16 8 C 0.06 0.81 7.17 -82.79 -0.59 0.21 16 9 C 0.55 8.43 7.97 34.54 0.28 8.71 16 10 O -0.48 -8.08 16.26 -19.26 -0.31 -8.39 16 11 O -0.30 -5.08 9.77 -47.26 -0.46 -5.54 16 12 C 0.05 0.72 5.95 36.01 0.21 0.94 16 13 C 0.50 10.06 7.91 -10.98 -0.09 9.97 16 14 O -0.53 -13.03 16.50 -14.10 -0.23 -13.27 16 15 N -0.70 -14.53 5.55 -61.48 -0.34 -14.87 16 16 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 17 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 19 C 0.06 1.76 5.46 -17.81 -0.10 1.66 16 20 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 C -0.10 -1.12 6.75 -79.72 -0.54 -1.65 16 26 N 0.06 0.71 3.94 34.07 0.13 0.85 16 27 O -0.12 -1.62 19.25 -29.46 -0.57 -2.19 16 28 O -0.12 -1.68 19.25 -29.46 -0.57 -2.25 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -36.87 380.46 -8.15 -45.02 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.23 Total: -2.69 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -1.66 Total: 10.52 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 1.17 Total: -42.60 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -2.14 Total: -31.65 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.87 -8.15 -45.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796260060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.735 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds